BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46460.1 Length=880 Score E Sequences producing significant alignments: (Bits) Value Ahg485019 jgi|Araly1|485019|fgenesh2_kg.5__1011__AT3G46460.1 1245 0.0 Ahg950672 jgi|Araly1|950672|scaffold_802559.1 595 2e-169 > Ahg485019 jgi|Araly1|485019|fgenesh2_kg.5__1011__AT3G46460.1 Length=781 Score = 1245 bits (674), Expect = 0.0 Identities = 746/781 (96%), Gaps = 4/781 (1%) Strand=Plus/Plus Query 77 tcttcatcttcctcttctctcAGATCACTGGAAGCTCTAGCTCGATTTCTCA-CAATCCG 135 ||||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||| Sbjct 1 TCTTCCTCTTCCTCTTCTCTCAGATCACTTGAAGCTCTAGCTCGATTTCTCATC-ATCCA 59 Query 136 CCATGAACTCACAAGCTTGTCTTCTTCTTCAGAAACAGCTTAAAGATCTTTGTAAGCATC 195 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 60 CCATGAACTCACAAGCTTGTCTTCTTCTTCAGAAACAGCTTAAAGATCTATGTAAGCATC 119 Query 196 CTGTAGATGGATTCTCTGCTGGTTTAGTTGATGAGAAGAATATATTCGAATGGAGCGTAA 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 120 CTGTAGATGGATTCTCTGCTGGTTTAGTTGATGAGAAGAATATATTCGAATGGAGCGTTA 179 Query 256 CTATTATTGGACCTCCTGATACTCTCTATGAAGGAGGATTTTTCTATGCCATTATGTCAT 315 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 180 CCATTATTGGACCTCCTGATACTCTCTATGAAGGAGGATTTTTCTATGCCATTATGTCTT 239 Query 316 TCCCACAAAACTATCCTAATAGCCCACCTACGGTGCGGTTTACTTCAGATATTTGGCATC 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCCCACAAAACTATCCTAATAGCCCACCTACGGTGCGGTTTACTTCAGATATTTGGCATC 299 Query 376 CTAACGTTTATCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATC 435 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 300 CTAACGTTTATCCCGATGGTCGTGTTTGTATATCTATTCTACATCCTCCTGGTGATGATC 359 Query 436 CAAGTGGATATGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAGTTGAGAGTATCA 495 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CAAGCGGATATGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAGTTGAGAGTATCA 419 Query 496 TGTTGAGTATTATATCAATGCTCTCTGGTCCCAACGACGAATCTCCAGCAAACGTTGAGG 555 |||||||||| ||||| |||||||||||||||||||| |||||||| || |||||||| | Sbjct 420 TGTTGAGTATCATATCGATGCTCTCTGGTCCCAACGATGAATCTCCTGCGAACGTTGAAG 479 Query 556 CTGCTAAAGAATGgagagagaagagagaTGAGTTCAAGAAGAAAGTGAGCCGTTGTGTCA 615 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 480 CTGCTAAAGAATGGAGAGAGAAGAGAGACGAGTTTAAGAAGAAAGTGAGCCGTTGTGTGA 539 Query 616 GAAAGTCTCAAGAAATGTTTTGATCAAAGAAACACTTTCACACTCCAACACCATCTTCTA 675 |||||||||||||||||||||||||| | ||||||||||||||| |||| ||| |||||| Sbjct 540 GAAAGTCTCAAGAAATGTTTTGATCATACAAACACTTTCACACTTCAACTCCACCTTCTA 599 Query 676 TGGAGTTCAAAAGCTCATTTATCTTATCGaaaaaaaTTCCCTTTGAAAAA-CTGTCCAAA 734 |||||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||| Sbjct 600 TGGAGTTCAAAAGCTCATTTATCTTATCGACAAAAAT-CCCTTTTAAAAAACTGTCCAAA 658 Query 735 CACTACTTGTAATAAACCCGTCTTGCATCTTTTAATCGCGTTCCTCAACGTGAAATGAAG 794 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 659 CACTACTTGTAATAAACCCGTCTTGCATCTTTTAATCGCGTTCTTGAACGTGAAATGAAG 718 Query 795 TGTTTGGTCGaaaaaaaTGTTGTTCTTGaaaaaaaCTGACATTAAAAGTTATACTATTCT 854 |||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| Sbjct 719 TGTTTGGTCGAAAAAAATCTTGTTCTTGCAAAAAACTGACATTAAAATTTATACTATTCT 778 Query 855 T 855 | Sbjct 779 T 779 > Ahg950672 jgi|Araly1|950672|scaffold_802559.1 Length=542 Score = 595 bits (322), Expect = 2e-169 Identities = 439/497 (88%), Gaps = 2/497 (0%) Strand=Plus/Plus Query 147 CAAGCTTGTCTTCTTCTTCAGAAACAGCTTAAAGATCTTTGTAAGCATCCTGTAGATGGA 206 |||||| | ||||| ||||||||||| ||||||||||| |||||||||||||| |||||| Sbjct 30 CAAGCTAGCCTTCTCCTTCAGAAACAACTTAAAGATCTCTGTAAGCATCCTGTTGATGGA 89 Query 207 TTCTCTGCTGGTTTAGTTGATGAGAAGAATATATTCGAATGGAGCGTAACTATTATTGGA 266 |||||||||||| | |||||||| ||||||||||||||||||||||| || ||||| ||| Sbjct 90 TTCTCTGCTGGTCTCGTTGATGATAAGAATATATTCGAATGGAGCGTTACCATTATCGGA 149 Query 267 CCTCCTGATACTCTCTATGAAGGAGGATTTTTCTAT-GCCATTATGTCATTCCCACAAAA 325 ||||||||||||||||||||||||||||| || || || |||||| |||| || ||||| Sbjct 150 CCTCCTGATACTCTCTATGAAGGAGGATTCTT-TAACGCTATTATGACATTTCCGCAAAA 208 Query 326 CTATCCTAATAGCCCACCTACGGTGCGGTTTACTTCAGATATTTGGCATCCTAACGTTTA 385 |||||| |||||||| || || ||| |||||||||| ||||| ||||||||||||||||| Sbjct 209 CTATCCGAATAGCCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACGTTTA 268 Query 386 TCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATCCAAGTGGATA 445 | | ||||| || ||||| ||||||||||| |||||||| ||||||||||| || || || Sbjct 269 TTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTA 328 Query 446 TGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAGTTGAGAGTATCATGTTGAGTAT 505 |||||||||||| ||||| ||||| |||||||| || ||||| ||||| ||||||||||| Sbjct 329 TGAGCTTGCAAGCGAGCGCTGGACTCCTGTTCATACTGTTGAAAGTATTATGTTGAGTAT 388 Query 506 TATATCAATGCTCTCTGGTCCCAACGACGAATCTCCAGCAAACGTTGAGGCTGCTAAAGA 565 ||||| ||||| ||||||||||| || || ||||||||||| ||||| ||||| ||||| Sbjct 389 CATATCGATGCTTTCTGGTCCCAATGATGAGTCTCCAGCAAATGTTGAAGCTGCCAAAGA 448 Query 566 ATGgagagagaagagagaTGAGTTCAAGAAGAAAGTGAGCCGTTGTGTCAGAAAGTCTCA 625 |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 449 ATGGCGAGAGAAGAGAGACGAGTTCAAGAAGAAAGTGAGCCGCTGTGTCAGAAAGTCTCA 508 Query 626 AGAAATGTTTTGATCAA 642 ||||||||| ||| ||| Sbjct 509 AGAAATGTTGTGAACAA 525 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32595094035 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5