BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46500.1 Length=1212 Score E Sequences producing significant alignments: (Bits) Value Ahg485021 jgi|Araly1|485021|fgenesh2_kg.5__1013__AT3G46500.1 1808 0.0 Ahg937351 jgi|Araly1|937351|scaffold_501542.1 676 0.0 Ahg473661 jgi|Araly1|473661|fgenesh2_kg.1__3615__AT1G35190.1 549 2e-155 > Ahg485021 jgi|Araly1|485021|fgenesh2_kg.5__1013__AT3G46500.1 Length=1199 Score = 1808 bits (979), Expect = 0.0 Identities = 1104/1165 (95%), Gaps = 5/1165 (0%) Strand=Plus/Plus Query 1 GGAGAACAAAACTCAAGAGGAAGCTTCGACCATTAATGTTTCATCCCTTGCTTGTATAGA 60 ||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| Sbjct 1 GGAAAACAAAACTCAAGAGGAAGCTTCGACCATCAATGTTTCATCTCTTACTTGCATAGA 60 Query 61 TCTCGCCAACTCCAATCTTCATCGATCAGCTGCTTCGCTTAAGCAGGCTTGGCTCTTCTT 120 |||||||||| |||||||||||| |||||||| | |||||||||||||||| |||||||| Sbjct 61 TCTCGCCAACACCAATCTTCATCAATCAGCTGATGCGCTTAAGCAGGCTTGTCTCTTCTT 120 Query 121 CTTTCTTTTTCTCAACGTCAATGATTACGGTTTGGCCTTTATTAGTTATGTGACTAGTTG 180 |||| ||||| ||||| |||||||||| || |||| ||||||| |||||||||| |||| Sbjct 121 CTTTATTTTTATCAACATCAATGATTATGGCGTGGCTTTTATTACTTATGTGACTCGTTG 180 Query 181 TTGGTTATTCTTGTTCTAGGCATGTCTAGATTGTGGATTTTTCTATGTCACAAATCATGG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTGGTTATTCTTGTTCTAGGCATGTCTAGATTGTGGATTTTTCTATGTCACAAATCATGG 240 Query 241 TATAAGTGAGGAGTTAAAGGACGAGGCTTTCGAGCAAAGCAAGAAGTTCTTTGCTCTTCC 300 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TATTAGTGAGGAGTTAAAGGACGAGGCTTTCGAGCAAAGCAAGAAGTTCTTTGCTCTTCC 300 Query 301 TTTGGACGAGAAGATGAAAGTCTTGAAAAACGAAAAACATCAAGGCTATTCACCCGTCCT 360 |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 301 TTTGGACGAGAAAATGAAAGTCTTGAAAAATGAAAAGCATCAAGGCTATTCACCCGTCCT 360 Query 361 TAGTCAAATCTCTGATAACCAAATCCATGGGGATTACAAAGAAAGTTTTTTCATTGGAAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TAGTCAAATCTCTGATAACCAAATCCATGGGGATTACAAAGAAAGTTTTTTCATTGGAAT 420 Query 421 CGAAGGCTCCAACGATACACCATTCTGTCGCGCTAACATTTGGCCTAACCCTGATGTTTT 480 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CGAAAGCTCCAACGATACACCATTCTGTCGCGCTAACATTTGGCCTAACCCTGATGTTTT 480 Query 481 GTCGGGATGGCAGGCGACCATGGAGAAATATCATCAAGAAGCATTGAGGGTTTGTAAGGC 540 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 481 GCCGGGATGGCAGGCGACCATGGAGAAATACCATCAAGAAGCATTGAGGGTTTGTAAGGC 540 Query 541 TATTGCTAGAGTATTGGCATTGGCGCTCAACGTGGATGGAGATTACTTTGATACACCGGA 600 ||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||| || Sbjct 541 TATTGCTAGAGTACTGGCATTGGCGCTCGATGTGGATGGAGATTACTTTGATAAACCAGA 600 Query 601 AATGCTTGGAAATCCCCTCACATTTATGCGCTTGCTTCACTATGAAGGGATGTCTGATCC 660 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 601 AATGCTGGGAAATCCCCTCGCATTTATGCGCTTGCTTCACTATGAAGGGATGTCTGATCC 660 Query 661 CTCAAAAGGAATATATGGCTGCGGGCCACATTCTGATTTTGGTATGATGACTCTCTTAGG 720 |||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||| Sbjct 661 CTCAAAAGGAATATATGGATGCGGCCCACATTCTGATTTCGGAATGATGACTCTCTTAGC 720 Query 721 AACGGATAGTGTAATGGGGCTCCAGATATGCAAGGATAGAGACGTGAAGCCTAGGAAGTG 780 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AACCGATAGTGTAATGGGGCTCCAGATATGCAAGGATAGAGACGTGAAGCCTAGGAAGTG 780 Query 781 GGAATATATACTATCGATAAAAGGGGCATATATCGTGAATATTGGTGACTTGCTAGAGCG 840 ||||||||||| |||||| ||||| |||||||| |||||||||||||||||||| ||||| Sbjct 781 GGAATATATACCATCGATTAAAGGCGCATATATTGTGAATATTGGTGACTTGCTGGAGCG 840 Query 841 TTGGAGCAATGGCATTTTTAAATCCACATTGCATCGGGTACTTGGGAATGGTCAAGACCG 900 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 841 TTGGAGCAATGGCATTTTTAAATCCGCATTGCATCGGGTACTTGGGAATGGTCAAGACCG 900 Query 901 ATATTCCATTGCATTCTTTCTGCAACCTAGTCACGACTGTATAGTAGAATGTCTTCCTAC 960 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 901 ATATTCCATTGCATTCTTTCTGCAACCGAGTCACGACTGTATAGTAGAATGTCTTCCTAC 960 Query 961 CTGCCAGTCTGAAAACAACCCTCCCAAATATCCAGCTATAAAATGTTCAACGTACCTCAC 1020 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 961 CTGCCAGTCTGAAAACAACCCTCCCAAATATCCAGCTATCAAATGTTCAACGTACCTCAC 1020 Query 1021 TCAACGTTACCAGGATTCACAAGTGGATTTGAGCATCTACAAAAAATAGACCTAAGTGAA 1080 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1021 CCAACGTTACCAGGATTCACAAGTGGATTTGAGCATCTACAAAAAACAGACCTAAGTGAA 1080 Query 1081 AGTCttttt-ggttttttttAGAAAGGTCCAAGCCCTTCCCACTATA-A--A-TGCTTTG 1135 ||||||||| || |||| ||||||||||||| |||||||||||||| | | ||||||| Sbjct 1081 AGTCTTTTTTGGAATTTTGTAGAAAGGTCCAATCCCTTCCCACTATATATGAATGCTTTG 1140 Query 1136 GTTTTCTAGTTGGGCTCCTCGTTAA 1160 || |||||||||||||| | ||||| Sbjct 1141 GTGTTCTAGTTGGGCTCGTTGTTAA 1165 > Ahg937351 jgi|Araly1|937351|scaffold_501542.1 Length=809 Score = 676 bits (366), Expect = 0.0 Identities = 400/417 (96%), Gaps = 0/417 (0%) Strand=Plus/Plus Query 389 GGGGATTACAAAGAAAGTTTTTTCATTGGAATCGAAGGCTCCAACGATACACCATTCTGT 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 274 GGGGATTACAAAGAAAGTTTTTTCATTGGAATCGAAGGCTCCAACGATACACCATTCTGT 333 Query 449 CGCGCTAACATTTGGCCTAACCCTGATGTTTTGTCGGGATGGCAGGCGACCATGGAGAAA 508 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 334 CGCGCTAACATTTGGCCTAACCCTGATGTTTTGCCGGGATGGCAGGCGACCATGGAGAAA 393 Query 509 TATCATCAAGAAGCATTGAGGGTTTGTAAGGCTATTGCTAGAGTATTGGCATTGGCGCTC 568 || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 394 TACCATCAAGAAGCATTGAGGGTTTGTAAGGCTATTGCTAGAGTACTGGCATTGGCGCTC 453 Query 569 AACGTGGATGGAGATTACTTTGATACACCGGAAATGCTTGGAAATCCCCTCACATTTATG 628 | |||||||||||||||||||||| ||| |||||||| |||||||||||| |||||||| Sbjct 454 GATGTGGATGGAGATTACTTTGATAAACCAGAAATGCTGGGAAATCCCCTCGCATTTATG 513 Query 629 CGCTTGCTTCACTATGAAGGGATGTCTGATCCCTCAAAAGGAATATATGGCTGCGGGCCA 688 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 514 CGCTTGCTTCACTATGAAGGGATGTCTGATCCCTCGAAAGGAATATATGGATGCGGGCCA 573 Query 689 CATTCTGATTTTGGTATGATGACTCTCTTAGGAACGGATAGTGTAATGGGGCTCCAGATA 748 ||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 574 CATTCTGATTTCGGAATGATGACTCTCTTAGCAACCGATAGTGTAATGGGGCTCCAGATA 633 Query 749 TGCAAGGATAGAGACGTGAAGCCTAGGAAGTGGGAATATATACTATCGATAAAAGGG 805 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 634 TGCAAGGATAGAGACGTGAAGCCTAGGAAGTGGGAATATATACCATCGATTAAAGGG 690 Score = 257 bits (139), Expect = 1e-67 Identities = 145/148 (98%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 198 AGGCATGTCTAGATTGTGGATTTTTCTATGTCACAAATCATGGTATAAGTGAGGAGTTAA 257 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 128 AGGCATGTCTAGATTGTGGATTTTTCTATGTCACAAATCATGGTATTAGTGAGGAGTTAA 187 Query 258 AGGACGAGGCTTTCGAGCAAAGCAAGAAGTTCTTTGCTCTTCCTTTGGACGAGAAGATGA 317 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 188 AGGACGAGGCTTTCGAGCAAAGCAAGAAGTTCTTTGCTCTTCCTTTGGACGAGAAAATGA 247 Query 318 AAGTCTTGAAAAACGAAAAACATCAAGG 345 ||||||||||||||||||| |||||||| Sbjct 248 AAGTCTTGAAAAACGAAAAGCATCAAGG 275 Score = 150 bits (81), Expect = 2e-35 Identities = 99/108 (92%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1 GGAGAACAAAACTCAAGAGGAAGCTTCGACCATTAATGTTTCATCCCTTGCTTGTATAGA 60 ||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| Sbjct 24 GGAAAACAAAACTCAAGAGGAAGCTTCGACCATCAATGTTTCATCTCTTACTTGCATAGA 83 Query 61 TCTCGCCAACTCCAATCTTCATCGATCAGCTGCTTCGCTTAAGCAGGC 108 |||||||||| |||||||||||| |||||||| | ||||||||||||| Sbjct 84 TCTCGCCAACACCAATCTTCATCAATCAGCTGATGCGCTTAAGCAGGC 131 > Ahg473661 jgi|Araly1|473661|fgenesh2_kg.1__3615__AT1G35190.1 Length=1210 Score = 549 bits (297), Expect = 2e-155 Identities = 704/896 (79%), Gaps = 45/896 (5%) Strand=Plus/Plus Query 198 AGGCATGTCTAGATTGTGGATTTTTCTATGTCA-CAAATCATGGTATAAGTGAGGAGTTA 256 |||||| | | |||||||||||||||||||| | | |||||||| |||| || ||||| Sbjct 101 AGGCATCTTTGGATTGTGGATTTTTCTATGTGATC-AATCATGGGATAAACGAAGAGTTC 159 Query 257 AAGGACGAGGCTTTCGAGCAAAGCAAGAAGTTCTTTGCTCTTCCTTTGGACGAGAAGATG 316 | ||| || | ||||||||| ||||||||||| ||||| |||||||| || ||||||||| Sbjct 160 ATGGAAGATGTTTTCGAGCAGAGCAAGAAGTTTTTTGCCCTTCCTTTAGAGGAGAAGATG 219 Query 317 AAAGTCTTGAAAAACGAAAAACATCA-AGGCTATTCACCCGTCCTT-A-GTCAAA-T--C 370 ||||| |||| ||||||||| ||| | ||||||| |||| || ||| | | ||| | Sbjct 220 AAAGTGTTGAGAAACGAAAAGCAT-AGAGGCTATACACCTGTTCTTGATGAAAAATTAGA 278 Query 371 T-CTGATAACCAAATCCATGGGGATTACAAAGAAAGTTTTTTCATT-G----GAA--T-C 421 | | | || ||| || |||||||| |||||||| ||| || |||| | ||| | | Sbjct 279 TCCCAAGAATCAAGTCAATGGGGATCACAAAGAAGGTTATTACATTGGAATTGAAGTTCC 338 Query 422 -GAAG--GCT-C-CA--ACGATACACCATTCTGTCGCGCTAACATTTGGCCTAACCCTGA 474 ||| | | | || |||| |||||| | | || ||||| ||||||| | |||| Sbjct 339 TAAAGATGATCCTCATTGGGATAAACCATTTTATGGCCCTAACCCTTGGCCTGATACTGA 398 Query 475 TGTTTTGTCGGGATGGCAG-GCGACCATGGAGAAATATCATCAAGAAGCATTGAGGGTTT 533 |||||| | || |||| | | || |||||||||||||||||||||||||||||||||| Sbjct 399 TGTTTTACCTGGTTGGC-GAGAAACAATGGAGAAATATCATCAAGAAGCATTGAGGGTTT 457 Query 534 GTAAGGCTATTGCTAGAGTATTGGCATTGGCGCTCAACGTGGATG-GAGATTACTTTGAT 592 ||||||||||| | | ||||||| || || ||| || |||||| | || ||||||||| Sbjct 458 CTAAGGCTATTGGAAAACTATTGGCGTTAGCACTCGACTTGGATGTG-GAATACTTTGAT 516 Query 593 AC-ACCGGAAATGCTTGGAAATCCCCTCACATTTATGCGCTTGCTT-CACTATGAAGGGA 650 | || | | ||||||||||| || | || |||||| ||| || | |||| |||||| Sbjct 517 AGGACAG-AGATGCTTGGAAAGCCTATTGCAACTATGCGATTG-TTGCGCTATCAAGGGA 574 Query 651 TGTCTGATCCCTCAAAAGGAATATATGGC-TGCGG-GCCACATTCTGATTTTGGTATGAT 708 | ||||||||||||||||||||||||| | || || || |||||| ||||| || ||||| Sbjct 575 TTTCTGATCCCTCAAAAGGAATATATG-CATGTGGAGC-ACATTCAGATTTCGGAATGAT 632 Query 709 GACTCTCTTAGGAACGGATAGTGTAATGGGGCTCCAGATATGCAAGGATAGAGA-CGTGA 767 |||||| |||| || ||| |||||||||| |||||||||||||| |||| ||| || || Sbjct 633 GACTCTGTTAGCCACCGATGGTGTAATGGGACTCCAGATATGCAAAGATA-AGAACGCGA 691 Query 768 AGCCT-AGGAAGTGGGAATATATACTATCGATAAAAGGGGCATATATCGTGAATATTGGT 826 |||| || |||||||||||| ||| |||| ||||| |||| |||||||||| |||| Sbjct 692 CGCCTCAG-AAGTGGGAATATGTACCGCCGATTAAAGGAGCATTTATCGTGAATCTTGGC 750 Query 827 GACT-TGCTAGAGCGTTGGAGCAATGGCATTTTT-AAATCCACATTGCATCGGGTACTTG 884 || | |||| || |||||||| |||||| ||||| |||||||| ||||||||||| |||| Sbjct 751 GA-TATGCTGGAACGTTGGAGTAATGGC-TTTTTCAAATCCACGTTGCATCGGGTTCTTG 808 Query 885 GGAATGGTCAAGACCGATATTCCATTGCATTCTTTCTGCAACCTAGTCACGACTGTATAG 944 |||| ||||| || |||||||||||| |||||||| || |||| | ||| |||||| | | Sbjct 809 GGAACGGTCAGGAACGATATTCCATTCCATTCTTTGTGGAACCAAATCATGACTGTCTCG 868 Query 945 TAGAATGTCTTCCTACCTGCCAGTCTGAAAACAACCCTCCCAAATATCCAGCTATAAAAT 1004 | || ||||| || |||||| |||| |||| | ||| ||| ||||||||| | || |||| Sbjct 869 TGGAGTGTCTCCCAACCTGCAAGTCGGAAAGCGACCTTCCTAAATATCCACCGATCAAAT 928 Query 1005 GTTCAACGTACCTCACTCAACGTTACCAGGATTCACAAGTGGATTTGAGCATCTAC 1060 | || || |||||||| || |||||| |||| |||| | | | || ||||||||| Sbjct 929 GCTCGACATACCTCACCCAGCGTTACGAGGAAACACATGCGAAGTTAAGCATCTAC 984 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45251902479 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5