BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46600.1
Length=2042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937371 jgi|Araly1|937371|scaffold_501562.1 2754 0.0
Ahg496077 jgi|Araly1|496077|fgenesh2_kg.8__1893__AT5G59450.1 712 0.0
> Ahg937371 jgi|Araly1|937371|scaffold_501562.1
Length=1810
Score = 2754 bits (1491), Expect = 0.0
Identities = 1709/1813 (94%), Gaps = 20/1813 (1%)
Strand=Plus/Plus
Query 105 TTCTAGAGAGATTCTGTTTCATGGATGCTATTTTGCCAGTACCCGTTGATGGGTTCAGAT 164
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TTCTAGTGAGATTCTGTTTCATGGATGCTATTTTGCCAGTACCTGTTGATGGGTTCAGAT 60
Query 165 TCGACACCGGTTCTGGATCTTGTTGCAAACCGAGGAACAATCTTGAATCTGGGACGACCA 224
|||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 61 TCGACAACGGTTCTGGATCTTGTTGCAAACCAAGGAACAATCTTGAATCTGGTACTACCA 120
Query 225 ATCGTTTCACTTGTTTCAACGAATCTGAATCTCAGAGCAACCCTTCTCCGACCGAGTCTA 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCGTTTCACTTGTTTCAACGAATCTGAATCTCAGAGCAACCCTTCTCCGACCGAGTCTA 180
Query 285 AGGTATGTTCAGATTACCTTCCTGTCTTTAAGTACATCAATGACATGTTGATGGAAGAAG 344
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGTATGTTCAGATTACCTCCCTGTCTTTAAGTACATCAATGACATGTTGATGGAAGAAG 240
Query 345 ATCTTGAAGGTCAGTCTTGTATGTTGGAAGACAGTTTGGCTTTACAAGCCGCAGAGAGAT 404
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 ATCTTGAAGGACAGTCTTGTATGTTGGAAGACAGTTTGGCTTTACAAGCCGCTGAGAGAT 300
Query 405 CTTTCT-TCGAAGTGCTTCAAGATC-AA-------A-C-TC----C-AATCTCGGGTGAT 448
|||||| | ||||| ||||| |||| || | | || | |||||| ||||||
Sbjct 301 CTTTCTAT-GAAGTACTTCAGGATCAAACTCCTCCACCGTCTGATCAAATCTCTGGTGAT 359
Query 449 CTAGAGGATGGTTCTCTTGGAAACTTCAGTTCTATAACGAGTTTGCATCAACCTGAAGTT 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTAGAGGATGGTTCTCTTGGAAACTTCAGTTCTATAACGAGTTTGCATCAACCTGAAGTT 419
Query 509 TCAGAGGAGTCAACCAGAAGGTATCGACATAGGGATGATGATGAAGATGATGATCTTGAG 568
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 420 TCAGAGGAGTCAACCAGAAGGTATCGACACAGGGATGATGATGAAGATGATGATTTTGAG 479
Query 569 AGTGGAAGGAAATCGAAGCTCCCTGCGATTTCTACGGTGGATGAGTTAGCAGAGAAGTTT 628
||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||
Sbjct 480 GGTGGAAGGAAATCGAAGCTTCCTGCAATATCTACTGTGGATGAGTTAGCAGAGAAGTTT 539
Query 629 GAGGAAGTGTTGTTGGTATGTCAAAAGAATGATCAGGGAGAAGCAACAGAGAAGAAAACA 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGGAAGTGTTGTTGGTATGTCAAAAGAATGATCAGGGAGAAGCAACAGAGAAGAAAACA 599
Query 689 AGACACGTAAAAGGCTCATCGAATCGATACAAGCAGCAAAAGTCAGATCAGCCAGTAGAT 748
||||| | ||| || ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 600 AGACAAGCAAAGGGTTCATCGAATCGATCCAAGCAGCAAAAGTCAGATCAGCCAGTGGAT 659
Query 749 ATGAGGAATCTTTTGATGCAATGCGCGCAAGCTGTGGCGAGTTTTGACCAGAGAAGAGCT 808
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 ATGAGGAACCTTTTGATGCAATGCGCGCAAGCTGTGGCGAGCTTTGACCAGAGAAGAGCT 719
Query 809 TTTGAGAAACTGAAGGAGATAAGAGAACACTCTTCTCGCCACGGTGATGCGACTCAAAGA 868
| ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||| |||
Sbjct 720 TCTGAGAAACTCAAGGAGATAAGAGAACACTCTTCTAGCCACGGCGATGCAACTCAGAGA 779
Query 869 CTTGGTTATCACTTTGCTGAGGCGCTTGAAGCTCGTATTACAGGAACCATGACTACACCA 928
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 780 CTTGGTTATCACTTCGCTGAGGCGCTTGAAGCGCGTATTACTGGAACCATGACTACACCA 839
Query 929 ATATCTGCTACTTCTAGCAGAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGATTT 988
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 840 ATATCTGCTACTTCTAGTAGAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGGTTT 899
Query 989 GTTCAGGCTTGCCCCACCTTAATAATGTGTTATTTCACTGCAAACAGAACAATCAATGAG 1048
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 GTTCAGGCTTGTCCCACCTTAATAATGTGTTATTTCACTGCAAACAGAACAATTGTTGAG 959
Query 1049 CTTGCTTCCAAAGCAACCACACTTCACATCATTGATTTTGGGATTCTCTATGGATTTCAA 1108
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 CTTGCTTCCAAAGCAACCACACTTCACATCATTGATTTTGGGATCCTCTATGGATTTCAG 1019
Query 1109 TGGCCTTGTCTGATACAAGCT-TTGTCAAAACGTGACATCGGACCACCACTGCTCCGTGT 1167
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGCCTTGTCTGATACAAGCTCTT-TCAAAACGTGACATCGGACCACCACTGCTCCGTGT 1078
Query 1168 GACTGGTATCGAGCTTCCTCAGTCAGGTTTCCGTCCATCAGAGCGGGTAGAAGAGACCGG 1227
||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1079 GACAGGTATCGAGCTGCCTCAGTCAGGCTTCCGCCCATCAGAGCGGGTAGAAGAGACCGG 1138
Query 1228 GCGAAGACTAAAGAGGTTCTGTGACAAGTTCAATGTCCCGTTTGAGTACAGTTTCATAGC 1287
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1139 GCGAAGACTGAAGAGATTCTGTGACAAGTTCAAAGTCCCGTTTGAGTACAGTTTCATAGC 1198
Query 1288 CAAGAATTGGGAGAACATAACTCTTGATGATCTGGTGATCAATAGTGGCGAGACAACAGT 1347
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1199 CAAAAACTGGGAGAACATAACTCTTGATGATCTGGTGATCAATAGTGGAGAGACAACAGT 1258
Query 1348 TGTCAACTGCATCCTCCGGCTACAATATACACCTGATGAAACCGTGTCCCTCAACTCACC 1407
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1259 TGTCAACTGCATCCTCCGGCTACAATATACGCCTGATGAAACCGTGTCCCTCAACTCACC 1318
Query 1408 GAGAGACACGGCTCTGAAACTATTCAGAGACATCAACCCTGACCTCTTTGTGTTTGCAGA 1467
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1319 AAGAGACACGGCTCTGAAACTATTCAGAGATATCAATCCTGACCTCTTTGTGTTTGCAGC 1378
Query 1468 GATTAACGGGACTTACAATTCACCCTTCTTCCTAACAAGGTTCAGAGAAGCTCTCTTCCA 1527
||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1379 GATCAACGGGACGTACAATTCGCCCTTCTTCCTAACAAGGTTCAGAGAAGCTCTGTTCCA 1438
Query 1528 TTGCTCGTCACTCTTTGACATGTATGAGACCACATTATCAGAAGACGACAATTGCAGGAC 1587
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTGCTCATCACTCTTTGACATGTATGAGACCACATTATCAGAAGACGACAATTGCAGGAC 1498
Query 1588 ACTGGTGGAGAGGGAACTAATCATAAGAGATGCAATGAGTGTGATAGCCTGTGAAGGGTC 1647
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CCTGGTGGAGAGGGAGCTAATCATAAGAGATGCAATGAGTGTGATAGCCTGTGAAGGGTC 1558
Query 1648 TGAGCGGTTTGCAAGGCCAGAGACCTACAAGCAATGGCAGGTTAGGATTCTAAGAGCAGG 1707
|||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 1559 TGAGCGGTTTGCAAGGCCCGAGACATACAAGCAATGGCAGGTTAGGATTTTAAGAGCCGG 1618
Query 1708 ATTTAGACCAGCGAAACTAAGCAAACAGATAGTAAAGGACGGGAAAGAGATAGTGAAAGA 1767
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |
Sbjct 1619 GTTTAGACCAGCGAAACTAAACAAACAGATCGTAAAGGACGGGAAAGAAATAGTGAAACA 1678
Query 1768 ACGTTACCACAAAGATTTTGTGATCGACAATGATAACCACTGGATGTTTCAGGGCTGGAA 1827
|||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1679 ACGTTACCACAAAGATTTCGTGATCGACAACGATAACAACTGGATGTTTCAGGGCTGGAA 1738
Query 1828 AGGAAGAGTCCTTTATGCTGTTTCTTGCTGGAAACCTGCTAAGAAGTAATAAAACAGTTC 1887
|||||||||||| ||||||||||| ||||||||||||||||||||| |||||| || ||
Sbjct 1739 AGGAAGAGTCCTCTATGCTGTTTCCTGCTGGAAACCTGCTAAGAAGCAATAAA-CAAATC 1797
Query 1888 TGTAATCATTTGC 1900
|||| ||||||||
Sbjct 1798 TGTAGTCATTTGC 1810
> Ahg496077 jgi|Araly1|496077|fgenesh2_kg.8__1893__AT5G59450.1
Length=2087
Score = 712 bits (385), Expect = 0.0
Identities = 990/1271 (78%), Gaps = 85/1271 (7%)
Strand=Plus/Plus
Query 746 GATATGAGGAATCTTTTGATGCAATGCGCGCAAGCTGTGGCGAGTTTTGACCAGAGAAGA 805
||| || ||| ||| || | |||||| || ||||||||||| || |||||||| ||||||
Sbjct 772 GATCTGCGGAGTCTGTTAACGCAATGTGCACAAGCTGTGGCAAGCTTTGACCAAAGAAGA 831
Query 806 GCTTTTGAGAAACTGAAGGAGATAAGAGAACACTCTTCTCGCCACGGTGATGCG-ACTCA 864
|| || ||||| || ||||||||| |||||||||| || | || |||| | || ||
Sbjct 832 GCAACAGATAAACTCAAAGAGATAAGATCACACTCTTCTAGCAATGGAGATG-GAACACA 890
Query 865 AAGACTTGGTTATCACTTTGCTGAGGCGCTTGAAGCTCGTATTACAGGAACCATGACT-A 923
|||||| | || | ||||||| |||||||| || || ||||| || |||| ||| || |
Sbjct 891 AAGACTAGCTTTTTACTTTGCAGAGGCGCTCGAGGCACGTATCACCGGAAACAT--CTCA 948
Query 924 -CACC----AATA-TCTG-CTACTTCTAGCA-GAACATCAATGGTGGACATTTTGAAGGC 975
| || || || | | ||||||||| | ||||| ||||||||||| ||||||||
Sbjct 949 CCGCCGGTTTCTACTCCGTTTCCTTCTAGCACG-ACATCCATGGTGGACATCTTGAAGGC 1007
Query 976 GTACAAG-GGATTTGTTCAGGCTTGCCCCACCTTA-ATAATGTG-TTA-TTTCACTGCAA 1031
||||||| | |||||||| |||| |||| | || ||| | | ||| ||| |||| |
Sbjct 1008 GTACAAGCTG-TTTGTTCATACTTGTCCCATC-TATGTAACG-GATTACTTT-GCTGCGA 1063
Query 1032 ACAGAA-CAATCAATGAGCTTGCT-TCCAAAGCAACCACA-CTTCACATCA-TTGATTTT 1087
||| || ||||| | ||||||||| | |||||||| | | |||||||| | ||||||||
Sbjct 1064 ACA-AATCAATCTACGAGCTTGCTAT-GAAAGCAACTA-AGCTTCACAT-AGTTGATTTT 1119
Query 1088 GGGATTCTCTATGGATTTCAATGGCCTTGTCTGATACAAGCTTTGTCAAAACGTGA-C-A 1145
||| ||||||| || ||||||||||||||| || ||| ||| |||| |||| | |
Sbjct 1120 GGGGTTCTCTACGGCTTTCAATGGCCTTGTTTGTTACGAGCACTGTCTAAAC--AACCGG 1177
Query 1146 TCGGACCACCACTGCTCCGTGTGACTGGTATCGAGCTTCCTC-AGTCAGGTTTCCGTCCA 1204
|||||||||| ||||||| |||||||| |||||||| || | || | |||||||||||
Sbjct 1178 GCGGACCACCAATGCTCCGGGTGACTGGAATCGAGCTGCCACAAG-CGGGTTTCCGTCCT 1236
Query 1205 TCAGAGCGGGTAGAAGAGACCGGGCGAAGACT-AAAGAGGTTCTGTGA-CAAGTTCAATG 1262
||||| ||||| |||||||| || |||||||| ||| |||||||| || | |||||||||
Sbjct 1237 TCAGACCGGGTTGAAGAGACTGGTCGAAGACTGAAA-AGGTTCTGCGATC-AGTTCAATG 1294
Query 1263 TCCCGTTTGAGTACAGTTTCATAGCCAAGAATTGGGAGAA-CATAACTCTTGATGATCTG 1321
|||||||||||| || |||||||| || || ||||| || || | ||||||||| ||
Sbjct 1295 TCCCGTTTGAGTTCAACTTCATAGCGAAAAAATGGGA-AAGTATCAGTCTTGATGAACTT 1353
Query 1322 GTGATCAATAGTGGCGAGACAACAGTTGTCAACTGCA-TCCTCCGGCTACAATATACACC 1380
|||||||| | |||||||| || ||||| |||| || | ||| ||||||| || ||
Sbjct 1354 ATGATCAATCCAGAAGAGACAACGGTCGTCAATTGCATTCAT-CGGTTACAATACACTCC 1412
Query 1381 TGATGAAACCGTGTCCCTCAACTCACCGAGAGACACGGCTCTGAAA-CTATTCAGAGACA 1439
|||||||| ||||| || |||| || |||||||||| ||| ||| ||||||||||| |
Sbjct 1413 GGATGAAACTGTGTCACTGGACTCTCCAAGAGACACGGTTCT-AAAGCTATTCAGAGATA 1471
Query 1440 TCAACCCTGACCTCTTTGTGTTTGCAGAGATTAACGGGACT-TACAATTCACCCTTCTTC 1498
|||| ||||||||||||||||||||||||||||| || | | ||||| || || ||||||
Sbjct 1472 TCAATCCTGACCTCTTTGTGTTTGCAGAGATTAATGGAA-TGTACAACTCTCCTTTCTTC 1530
Query 1499 CTAACAAGGTTCAGAGAAGCTCTCTTCCATTGCTCGTCACTCTTTGACATGTATGAGACC 1558
| || |||||| |||||||||| ||||||| ||| |||||||||||||||| ||| |||
Sbjct 1531 ATGACGAGGTTCCGAGAAGCTCTTTTCCATTTCTCTTCACTCTTTGACATGTTTGACACC 1590
Query 1559 ACATTATCA-G-A-AG-ACGA---CAATTGCAGGACACTGGTGGAGAGGGAACTAATCAT 1611
||| || || | | || | || ||| |||| ||||| |||||| || | | |
Sbjct 1591 ACAATA-CAAGCAGAGGATGAATACAAAAACAGGGCACTGTTGGAGAAAGAGTTGCTTGT 1649
Query 1612 AAGAGATGCAATGAGTGTGATAGCCTGTGAAGG-GTCTGAGCGGTTTGCAAGGCCAGAGA 1670
||||| || ||||| ||||| |||| ||||| | ||||||| ||||| ||||| || |
Sbjct 1650 GAGAGACGCGATGAGCGTGATTTCCTGCGAAGGCG-CTGAGCGTTTTGCGAGGCCTGAAA 1708
Query 1671 CCTACAAGCAATGGC-AGGTTAGGATTCTAAGAGCAGGATTTA-GACCAGCGAAACTA-A 1727
||||||||||||||| || |||||||| | ||||| || |||| | ||||| || ||| |
Sbjct 1709 CCTACAAGCAATGGCGAG-TTAGGATTTTGAGAGCCGGGTTTAAG-CCAGC-AA-CTATA 1764
Query 1728 -GCAAACAGAT-AGTAAAGGACGGGAAAG-AGATAGTGAAAGAA-CGTTACCACAAAGAT 1783
| |||||||| | | ||||| || ||| | || |||| ||| |||||||| | ||||
Sbjct 1765 AGTAAACAGATCA-TGAAGGA-GGCTAAGGAAATCGTGAG-GAAACGTTACCATAGAGAT 1821
Query 1784 TTTGTGATCGACAATGATAACCACTGGATGTTTCAGGGCTGGAAAGGAAGAGTCCTTTAT 1843
||||||||||| | |||||| | |||||| ||||||| ||||||||||||||| | |||
Sbjct 1822 TTTGTGATCGATAGCGATAACAATTGGATGCTTCAGGGATGGAAAGGAAGAGTCATCTAT 1881
Query 1844 GCTGTTTCTTGCTGGAAACCTGCTAAGAAGT-AATAAAACAGTTC-TGTAATCATTTGCA 1901
||| |||||||||||||||||||| |||||| || ||| || | ||||| ||| | |
Sbjct 1882 GCTTTTTCTTGCTGGAAACCTGCTGAGAAGTTAACAAA-CAAC-CATGTAAACATCTAAA 1939
Query 1902 TAATTTTGCTAGCTTTCCATTTCTTTGTTTTTGGTTTC--AA-AGTGTTGTAGAA-ACTG 1957
|||| || || || | ||| ||| |||||| |||| || ||| |||||||| | ||
Sbjct 1940 TAATGTTACTT-CTCT--ATTACTTCATTTTTG-TTTCCCAATAGTTTTGTAGAATA-TG 1994
Query 1958 TTTGCTCTCAT 1968
|||| || |||
Sbjct 1995 TTTGATCCCAT 2005
Score = 102 bits (55), Expect = 9e-21
Identities = 177/232 (76%), Gaps = 23/232 (10%)
Strand=Plus/Plus
Query 124 CATGGATGCTATT-TTGCCAGTACCCGTTGATGGGTTCAGATTCGACACCGGTTCTGGAT 182
|||||| ||| || || | ||| | ||||||||||||||||| || | ||| |||||||
Sbjct 90 CATGGACGCTCTTCTT-CAAGTTTCAGTTGATGGGTTCAGATTTGAGAACGGATCTGGAT 148
Query 183 CTTGTTGCAAACCGAGGAACAATCTTGAATCTGGGACGACCAATCGT-TTCACTTGTTTC 241
|||| |||||||| || |||||||| |||||||||| | ||||| | ||| | ||||
Sbjct 149 CTTGCTGCAAACCCAGAAACAATCTCGAATCTGGGA--A-CAATC-TCTTCCCCAATTTC 204
Query 242 AACGA-A-TCTGAATC--TC-AGAGCAACCCTTCTCCGACCGAGTCTAA-GGTATGTTCA 295
|||| | || ||||| || | ||| | | | | ||| || || ||| ||||
Sbjct 205 CACGAGACTCAGAATCAGTCTTCACCAAACGAT-T-C-ACC---TCCAACGGTGTGTTTG 258
Query 296 GATTACCT-TCCTG-TCTTTAAGTACATCAATGACATGTTGATGGAAGAAGA 345
|| || || ||||| || |||||||||||||||||||||||||||| |||||
Sbjct 259 GA-TAACTCTCCTGTTC-TTAAGTACATCAATGACATGTTGATGGACGAAGA 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76789933920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5