BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46610.1 Length=2471 Score E Sequences producing significant alignments: (Bits) Value Ahg488271 jgi|Araly1|488271|fgenesh2_kg.6__1405__AT3G46610.1 2734 0.0 > Ahg488271 jgi|Araly1|488271|fgenesh2_kg.6__1405__AT3G46610.1 Length=2177 Score = 2734 bits (1480), Expect = 0.0 Identities = 1800/1950 (92%), Gaps = 40/1950 (2%) Strand=Plus/Plus Query 443 GAAAGTTCTGTTTTTGTGTGAGCCAAAGAGAAGTTTGTTGGGATCATCGTTTGGGGTAGG 502 ||||||||||||| |||||||||||||||||| ||||| |||||||||| | ||||| || Sbjct 210 GAAAGTTCTGTTTCTGTGTGAGCCAAAGAGAAATTTGTCGGGATCATCGGTCGGGGTGGG 269 Query 503 ATGGGCCACTGAGCAACGAGAGCTCGAGCTCGGGGAAGAAGAAGTTTCCACGGAAGATTT 562 ||||||||| ||||||| | | |||||| ||| |||||||||||||||||||||| Sbjct 270 ATGGGCCACGGAGCAAC--G-G---GAGCTC-GGG--GAAGAAGTTTCCACGGAAGATTC 320 Query 563 AAG-T-T---C--A--GCAAATGGAGGAGAAAAGAA-CAATTTAAGAGTTGATGTTAGAG 612 ||| | | | | | ||||||||||||||| || ||||| ||||||||||||||||| Sbjct 321 AAGTTATCCACAAACTGTAAATGGAGGAGAAAA-AACCAATTCAAGAGTTGATGTTAGAG 379 Query 613 AATTAGCGTTTAGTTTACGAGCTGCTAAGACAGCTGATGATGTGGATGCTGTTCTCAAGG 672 |||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 380 AATTGGCGTATAGTTTACGAGCTGCTAAGACAGCAGATGATGTGGATGTTGTTCTCAAGG 439 Query 673 ACAAGGGAGAGTTGCCTCTGCAAGTCTTTTGTGCTATGATAAAGGGTTTTGGCAAGGACA 732 | |||||||| || ||||| ||||||| |||||||||||| | ||||||||||||||||| Sbjct 440 AGAAGGGAGAATTACCTCTACAAGTCTATTGTGCTATGATTAGGGGTTTTGGCAAGGACA 499 Query 733 AGAGATTGAAGCCTGCGGTAGCTGTAGTAGATTGGCTTAAGAGGAAGAAGAGTGAATCAG 792 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 500 AGAGACTGAAGCCTGCGATAGCTGTAGTAGATTGGCTTAAGAGGAAGAAGAGTGAATCAG 559 Query 793 GCGGTGTCATAGGTCCAAATCTTTTTATATATAACAGCCTTTTGGGTGCTATG--AGAG- 849 ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | || Sbjct 560 GCGGTGTCATAGGTCCAAACCTTTTTATATATAACAGCCTTTTGGGTGCGATGAAACAGT 619 Query 850 -G-GT-TTGGGGAAGCAGAGAAGATACTGAAAGATATGGAGGAAGAAGGGATTGTTCCAA 906 | || |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 620 CGAGTGTTGGGGAAGCAGAGAAGATACTGAGTGATATGGAGGAAGAAGGGATTGTTCCAA 679 Query 907 ACATTGTTACTTACAATACTTTGATGGTTATTTACATGGAGGAAGGTGAGTTTCTCAAGG 966 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 680 ACATTGTTACTTACAATACTTTGATGGTTATTTACATGGAGGAAGGGGAGTTTCACAAGG 739 Query 967 CTCTTGGGATTCTTGATTTAACCAAGGAAAAGGGTTTTGAGCCTAACCCGATTACATATT 1026 | |||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| Sbjct 740 CCCTTGGGATTCTTGATTTAGTCAAGGAAAAAGGTTTTGAGCCTAACCCGATAACATATT 799 Query 1027 CAACGGCTTTGCTTGTTTACAGAAGAATGGAAGACGGTATGGGAGCTTTAGAGTTCTTTG 1086 |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| Sbjct 800 CAACGGCTTTGCTTGTCTACAGAAGAATGGAAGACGGTATGGGAGCTCTCGAGTTCTTTG 859 Query 1087 TTGAATTGAGAGAGAAATACGCAAAGAGGGAAATAGGGAATGATGTTGGTTACGATTGGG 1146 |||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||| Sbjct 860 TTGAATTGAGAGAGAAATACTCAAAGAGGGAAATAGGGAATGACGCCGATTACGATTGGG 919 Query 1147 AATTTGAGTTTGTTAAGCTTGAGAACTTT-ATTGGTAGAATATGCTACCAAGTGATGAGG 1205 ||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||| Sbjct 920 AATTTGAGTTTGTTAAGCTCGA-AAATTTCATTGGTAGAATATGCTACCAAGTGATGAGG 978 Query 1206 CGGTGGTTGGTGAAAGATGATAATTGGACTACTAGAGTGTTGAAGCTTTTGAATGCAATG 1265 |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 979 CGGTGGCTGGTGAAAGATGAAAACTGGACTACTAGAGTGTTGAAGCTTTTGAATGCAATG 1038 Query 1266 GACAGTGCAGGG-GTTAGACCGAGTAGGGAAGAGCACGAGAGGCTTATATGGGCATGTAC 1324 |||| ||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 1039 GACAATGC-GGGTCTTAAACCGAGTAGGGAAGAGCATGAGAGGCTTATATGGGCATGTAC 1097 Query 1325 TCGTGAAGAGCATTATATTGTTGGTAAAGAGTTGTATAAAAGAATCAGAGAGAGGTTTTC 1384 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1098 GCGTGAAGAACATTATATTGTTGGTAAAGAGTTGTATAAAAGAATCAGAGAGAGGTTTCC 1157 Query 1385 TGAGATAAGTCTGTCTGTTTGCAACCATTTGATTTGGCTGATGGGTAAGGCTAAGAAATG 1444 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1158 TGAGATAAGTCTATCTGTCTGCAACCATTTGATTTGGCTGATGGGTAAGGCTAAGAAATG 1217 Query 1445 GTGGGCAGCGTTGGAGATCTACGAGGATCTTCTTGACGAAGGACCTGAACCTAACAATTT 1504 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1218 GTGGGCAGCGTTAGAGATCTACGAGGATCTTCTTGACGAAGGACCTGAACCGAACAATTT 1277 Query 1505 GTCTTATGAGTTAGTGGTCTCTCATTTCAATATCTTGCTGAGTGCAGCTAGCAAGAGAGG 1564 |||||| || ||||||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 1278 GTCTTACGAATTAGTGGTCTCTCATTTCAATATTTTGCTGAGTGCAGCTAGTAGGAGAGG 1337 Query 1565 GATATGGAGATGGGGAGTTAGGTTACTTAACAAAATGGAAGATAAAGGATTGAAACCGCA 1624 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1338 GATATGGAGATGGGGAGTTAGGCTACTTAACAAAATGGAAGATAAAGGATTGAAACCGCA 1397 Query 1625 GAGGAGACATTGGAACGCGGTTCTTGTAGCATGTTCAAAAGCCTCTGAGACCACAGCTGC 1684 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1398 GAGCAGACATTGGAACGCGGTTCTTGTAGCATGTTCAAAAGCCTCTGAGACCACAGCTGC 1457 Query 1685 GATCCAAATCTTTAAAGCAATGGTTGACAATGGTGAAAAGCCAACGGTCATCTCATACGG 1744 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1458 GATCCAAATCTTTAAAGCAATGGTTGACAATGGTGAAAAGCCAACGGTAATCTCATACGG 1517 Query 1745 TGCACTACTCAGTGCTCTTGAGAAAGGGAAGCTATATGATGAGGCGTTTCGGGTTTGGAA 1804 ||| || || ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 1518 TGCGCTGCTTAGTGCTCTTGAGAAAGGGAAGTTATATGATGAGGCGTTTCGAGTTTGGAA 1577 Query 1805 CCATATGATTAAGGTAGGGATTGAGCCAAATCTTTACGCGTACACAACAATGGCTTCAGT 1864 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1578 CCATATGATTAAGGTAGGTATTGAGCCAAATCTTTACGCGTACACGACAATGGCTTCAGT 1637 Query 1865 TTTGACAGGACAGCAAAAGTTCAATCTTTTGGATACCCTTCTCAAGGAAATGGCTTCAAA 1924 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1638 TTTGACAGGACAGCAAAAATTCAATCTTTTGGATACCCTTCTCAAGGAAATGGCATCAAA 1697 Query 1925 GGGTATTGAACCGAGCGTTGTGACTTTCAACGCGGTTATAAGTGGTTGCGCGAGGAACGG 1984 |||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||| Sbjct 1698 AGGTATTGAGCCGAGCGTTGTGACTTACAATGCGGTTATAAGCGGTTGCGCGAGGAACGG 1757 Query 1985 GTTAAGTGGTGTGGCTTATGAGTGGTTTCATAGAATGAAAAGTGAGAATGTTGAGCCTAA 2044 ||||||||| |||||||| ||||||||||| ||||||| | ||||||| || || ||||| Sbjct 1758 GTTAAGTGGGGTGGCTTACGAGTGGTTTCACAGAATGAGAGGTGAGAAGGTCGAACCTAA 1817 Query 2045 CGAGATAACTTACGAGATGTTGATTGAGGCTCTTGCAAATGATGCAAAGCCAAGGCTTGC 2104 |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1818 TGAGATAACCTACGAGATGTTGATCGAGGCTCTTGCGAATGATGCAAAGCCAAGGCTTGC 1877 Query 2105 TTATGAGTTACATGTGAAGGCTCAAAACGAAGGGCTTAAA-CTCTCTTCTAAGCCATATG 2163 ||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||| | Sbjct 1878 TTATGAGTTACATTTAAAGGCTCAAAACGAAGGGCT-AAAGCTCTCTTCTAAGCCATACG 1936 Query 2164 ATGCGGTTGTTAAATCAGCTGAGACTTATGGAGCCACCATTGATCTTAATCTTTTGGGTC 2223 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1937 ACGCGGTTGTTAAATCAGCTGAGACTTATGGAGCCACCATTGATCTTAATCTGTTGGGTC 1996 Query 2224 CTCGACCAGACAAAAAGAATAGACCTTAGTCTGACGAAAACACATTGT-A-C-AAGGTTA 2280 |||||||| ||||| |||| ||| |||||||||| | || | ||| | | || |||| Sbjct 1997 CTCGACCACACAAAGAGAAGAGAGCTTAGTCTGAT-ACAATA--TTGAGATCCAATGTTA 2053 Query 2281 CCGTGGGGTAAGGCGCATCCAAGGACCCTTAAAGGCAAGAAAATTGCCATTACAGGGAAG 2340 |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 2054 CCGTGGGGTAAGGCACATCCAAGGACTCTTAAAGGCAAGAAAATTGCCATTGCAGGGAAG 2113 Query 2341 AAGAAAGTTTCCAAGTAATCA-CTTTCTTG 2369 ||||||||||||||||||||| ||| |||| Sbjct 2114 AAGAAAGTTTCCAAGTAATCATCTT-CTTG 2142 Score = 200 bits (108), Expect = 4e-50 Identities = 168/194 (87%), Gaps = 16/194 (8%) Strand=Plus/Plus Query 255 ATGCAAGCTTTAAGCATTTTGCCATTAAAGTCTGGTCTTTTAGTTGGATCAAGATTGGAA 314 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGCAAGCTTTAAGCATTTGGCCATTAAAGTCTGGTCTTTTAGTTGGATCGAGATTGGAA 60 Query 315 TTTGAGTTGGATTGTTCTTGTTTTGTAGTTAGCCCTAAGACTACTAGAAAGAGACTTTGC 374 |||||||||||||||||||||||||||||||| | |||| | |||||||||| | ||| Sbjct 61 TTTGAGTTGGATTGTTCTTGTTTTGTAGTTAGTCATAAG--T-CTAGAAAGAGGCATTG- 116 Query 375 TT-T-CTTGAACAGGCTTGCTTCGGTAGTAGTAGTAGTATCTCTAGCTTCATCTTCGTTT 432 || | || ||||||| |||||| | | |||| | ||||||||||| ||||| |||| Sbjct 117 TTCTGCT-GAACAGGGTTGCTT---T-G--GTAG-A--ATCTCTAGCTTGATCTTGGTTT 166 Query 433 CGAGTAACAGGAAA 446 ||||||| |||||| Sbjct 167 CGAGTAATAGGAAA 180 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93130649025 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5