BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G46880.1

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485059 jgi|Araly1|485059|fgenesh2_kg.5__1051__AT3G46880.1         442    1e-123


> Ahg485059 jgi|Araly1|485059|fgenesh2_kg.5__1051__AT3G46880.1
Length=498

 Score =  442 bits (239),  Expect = 1e-123
 Identities = 347/396 (88%), Gaps = 20/396 (5%)
 Strand=Plus/Plus

Query  1    ATGGAGGGTAAAGGAAGAGTTGGATCATCATCGTCTTCTTCCTTCACAGCTCAACTCTTT  60
            ||||||||||||||||||||||||||||||||| ||||||||| ||| ||| || |||||
Sbjct  1    ATGGAGGGTAAAGGAAGAGTTGGATCATCATCGCCTTCTTCCTACACCGCTAAAATCTTT  60

Query  61   GGCCCCAAGGAACCTTCCTCCTCTGCCAACTTCAACTCCATTTTCCCTCCT---TCC---  114
            ||||||||||||||||||||||| |||||||||||||||||||||||||||   |||   
Sbjct  61   GGCCCCAAGGAACCTTCCTCCTCCGCCAACTTCAACTCCATTTTCCCTCCTCCCTCCAAG  120

Query  115  ---A---AGGGAACAGCAAGAAACATCCTAAGCTCCAAACATGGGTCCCTAGAACAACGT  168
               |   |||||||| |||||||||||||||| |||||| |||| |||||||| ||||||
Sbjct  121  AGTATTCAGGGAACATCAAGAAACATCCTAAGTTCCAAATATGGCTCCCTAGACCAACGT  180

Query  169  AAAGAAGCTGGAACCTGCAATCTAAGCTCATCTCTTTACTACGGTGGTCAAGATGTTTAC  228
            |||||| ||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct  181  AAAGAATCTGCAACCTGCAATCTAAGTTCATCACTTTATTACGGTGGTCAAGATGTTTAC  240

Query  229  TCTCACCCCACACACAACCATACTTACCCTAC----AAAGAGACAAAATCTTTTGACTTT  284
            |||||  |||| |||||||||||| || ||||    |||||||||||||| | |||||||
Sbjct  241  TCTCAATCCACTCACAACCATACTCACACTACAGTGAAAGAGACAAAATC-TCTGACTTT  299

Query  285  ACAAAACGTTGAAT--CATTCAGATTAACAAGGATCAGAACAGAGATAACAACGATGCCA  342
             |||||||||| ||  || ||||||||||||||||||||||||||||||||| ||||| |
Sbjct  300  GCAAAACGTTGTATCCCA-TCAGATTAACAAGGATCAGAACAGAGATAACAATGATGCAA  358

Query  343  ATTCGTCTGACGCCTCTAGAGGAAACTGGTGGCAAG  378
            | ||||| |||||||| |||||||||||||||||||
Sbjct  359  ACTCGTCGGACGCCTCAAGAGGAAACTGGTGGCAAG  394


 Score =  122 bits (66),  Expect = 2e-27
 Identities = 73/76 (96%), Gaps = 1/76 (1%)
 Strand=Plus/Plus

Query  379  GTTCACTATATTACTAGAAGCTTCTCTAAGTGCGTCTCTGTAGAAGAATATCAAGTTGAA  438
            |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct  424  GTTCACTATATTACTAGAAGCTTCTCTAAGTGCGTCTCTGTAGAAGAACA-CAAGTTGAA  482

Query  439  ACAGAACAATATTTGA  454
            |||||||||||| |||
Sbjct  483  ACAGAACAATATATGA  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16712147982


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5