BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46880.1 Length=462 Score E Sequences producing significant alignments: (Bits) Value Ahg485059 jgi|Araly1|485059|fgenesh2_kg.5__1051__AT3G46880.1 442 1e-123 > Ahg485059 jgi|Araly1|485059|fgenesh2_kg.5__1051__AT3G46880.1 Length=498 Score = 442 bits (239), Expect = 1e-123 Identities = 347/396 (88%), Gaps = 20/396 (5%) Strand=Plus/Plus Query 1 ATGGAGGGTAAAGGAAGAGTTGGATCATCATCGTCTTCTTCCTTCACAGCTCAACTCTTT 60 ||||||||||||||||||||||||||||||||| ||||||||| ||| ||| || ||||| Sbjct 1 ATGGAGGGTAAAGGAAGAGTTGGATCATCATCGCCTTCTTCCTACACCGCTAAAATCTTT 60 Query 61 GGCCCCAAGGAACCTTCCTCCTCTGCCAACTTCAACTCCATTTTCCCTCCT---TCC--- 114 ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 61 GGCCCCAAGGAACCTTCCTCCTCCGCCAACTTCAACTCCATTTTCCCTCCTCCCTCCAAG 120 Query 115 ---A---AGGGAACAGCAAGAAACATCCTAAGCTCCAAACATGGGTCCCTAGAACAACGT 168 | |||||||| |||||||||||||||| |||||| |||| |||||||| |||||| Sbjct 121 AGTATTCAGGGAACATCAAGAAACATCCTAAGTTCCAAATATGGCTCCCTAGACCAACGT 180 Query 169 AAAGAAGCTGGAACCTGCAATCTAAGCTCATCTCTTTACTACGGTGGTCAAGATGTTTAC 228 |||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct 181 AAAGAATCTGCAACCTGCAATCTAAGTTCATCACTTTATTACGGTGGTCAAGATGTTTAC 240 Query 229 TCTCACCCCACACACAACCATACTTACCCTAC----AAAGAGACAAAATCTTTTGACTTT 284 ||||| |||| |||||||||||| || |||| |||||||||||||| | ||||||| Sbjct 241 TCTCAATCCACTCACAACCATACTCACACTACAGTGAAAGAGACAAAATC-TCTGACTTT 299 Query 285 ACAAAACGTTGAAT--CATTCAGATTAACAAGGATCAGAACAGAGATAACAACGATGCCA 342 |||||||||| || || ||||||||||||||||||||||||||||||||| ||||| | Sbjct 300 GCAAAACGTTGTATCCCA-TCAGATTAACAAGGATCAGAACAGAGATAACAATGATGCAA 358 Query 343 ATTCGTCTGACGCCTCTAGAGGAAACTGGTGGCAAG 378 | ||||| |||||||| ||||||||||||||||||| Sbjct 359 ACTCGTCGGACGCCTCAAGAGGAAACTGGTGGCAAG 394 Score = 122 bits (66), Expect = 2e-27 Identities = 73/76 (96%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 379 GTTCACTATATTACTAGAAGCTTCTCTAAGTGCGTCTCTGTAGAAGAATATCAAGTTGAA 438 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 424 GTTCACTATATTACTAGAAGCTTCTCTAAGTGCGTCTCTGTAGAAGAACA-CAAGTTGAA 482 Query 439 ACAGAACAATATTTGA 454 |||||||||||| ||| Sbjct 483 ACAGAACAATATATGA 498 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16712147982 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5