BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46900.1
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485061 jgi|Araly1|485061|fgenesh2_kg.5__1053__AT3G46900.1 728 0.0
> Ahg485061 jgi|Araly1|485061|fgenesh2_kg.5__1053__AT3G46900.1
Length=530
Score = 728 bits (394), Expect = 0.0
Identities = 479/520 (92%), Gaps = 6/520 (1%)
Strand=Plus/Plus
Query 3 CATTAGTatcatggatcatgatcacatgcatgacatgccaccaccatcaccatcatcatc 62
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1 CATTAGTATCATGGATCATGATAACATGCATAACATGCCACCACCATCACCATCATCATC 60
Query 63 atcgatgtcgaatcatA-CAACACCACACATGATGATGATGCACATGACCTTCTTTTGGG 121
| ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 61 A---ATGTCGAATCATACCAA-ACCACACATGATGATGATGCACATGACGTTCTTTTGGG 116
Query 122 GTAAGAACACGGAGGTTCTCTTCTCCGGATGGCCCGGGACAAGCTCCGGCATGTACGCTC 181
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 117 GTAAGAACACGGAGGTTCTATTCTCCGGCTGGCCGGGGACAAGCTCCGGCATGTACGCTC 176
Query 182 TCTGTCTCATTGTTATATTCCTCCTCGCCGTAATTGCCGAGTGGCTCGCTCATTCACCGA 241
|||||||||| ||| | ||||||||||||||||||||||||||||| || ||||| |||
Sbjct 177 TCTGTCTCATCGTTGTCTTCCTCCTCGCCGTAATTGCCGAGTGGCTTGCCCATTCGCCGG 236
Query 242 TCCTACGTGTCAGTGGCTCAACCAATCGAGCCGCCGGGCTCGCTCAAACCGCTGTGTACA 301
|||||||||| ||||||| ||||| || ||||||||||||||||| ||||| |||||||
Sbjct 237 TCCTACGTGTTGGTGGCTCTACCAACCGCGCCGCCGGGCTCGCTCAGACCGCCGTGTACA 296
Query 302 CACTCAAGACTGGCCTTTCGTATTTGGTGATGCTCGCTGTTATGTCCTTTAACGCAGGTG 361
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 297 CACTCAAGACTGGCCTTTCGTATTTGGTGATGCTCGCTGTTATGTCCTTTAATGGAGGCG 356
Query 362 TTTTCATCGTCGCTATCGCCGGCTATGGCGTTGGTTTCTTTCTCTTTGGGAGCACTACTT 421
|||||||||| ||||||||||| || | ||||||||||||||||||||| ||||||||||
Sbjct 357 TTTTCATCGTTGCTATCGCCGGATACGCCGTTGGTTTCTTTCTCTTTGGAAGCACTACTT 416
Query 422 TCAAGAAACCCTCCGATGACCAGAAAACCGCCGAGCTTCTTCCGCCGTCTTCAGGCTGCG 481
||||||||||||||||||||| ||||||| |||||||||| |||||||| ||||||||||
Sbjct 417 TCAAGAAACCCTCCGATGACCGGAAAACCACCGAGCTTCTCCCGCCGTCGTCAGGCTGCG 476
Query 482 TTTGTTGAACAATTGAAATTACTCTT-TGttttttttttt 520
|||||| |||||||||||||||| || | |||||||||||
Sbjct 477 TTTGTTAAACAATTGAAATTACTGTTATTTTTTTTTTTTT 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23293102287
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5