BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47295.1 Length=460 Score E Sequences producing significant alignments: (Bits) Value Ahg485094 jgi|Araly1|485094|fgenesh2_kg.5__1086__AT3G47295.1 564 2e-160 > Ahg485094 jgi|Araly1|485094|fgenesh2_kg.5__1086__AT3G47295.1 Length=401 Score = 564 bits (305), Expect = 2e-160 Identities = 376/408 (92%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 9 ATTGGATAACCACAACCAGAATCGATTTT-GAATCATCATTTCTATAAATATATACGAC- 66 |||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||| Sbjct 2 ATTGGATAACCACAACCAGAAT--ATTTTGGTACCATCATTTCTATAAATATATACGACG 59 Query 67 TCATACATACATAT--ACATACCTCTTAAACAAAACTGAGATGAGTTTTGGAACTCGTCT 124 | |||||||||||| |||||||||| |||| |||||||||||||||||||| ||||||| Sbjct 60 T-ATACATACATATAAACATACCTCTCAAACCAAACTGAGATGAGTTTTGGATCTCGTCT 118 Query 125 TCTTTTGTTTCTCATACTAA-CACTTCCACTTGTAACATCTTCATCCCCAAACACT-CTT 182 |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| ||| Sbjct 119 TCTTTTGTTTCTCATACTAATC-CTTCCACTTGTAACATCTTCATCCCAAAACACTCCTT 177 Query 183 CATGTTTCAGGAATTGTGAAGACAGGGACTACAAGTAGATTCTTGATGATGACCATCGAG 242 | |||||||||| ||| |||||||||||||| |||| ||| ||| ||| ||||||||||| Sbjct 178 C-TGTTTCAGGATTTGGGAAGACAGGGACTAAAAGTGGATCCTTAATGGTGACCATCGAG 236 Query 243 GATTATGACGATCCATCTGCAAACACCAGACACGATCCCAGCGTTCCGACCAATGCAAAG 302 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 GATTATGATGATCCATCTGCAAACACCAGACACGATCCCAGCGTTCCGACCAATGCAAAG 296 Query 303 GCTGACACAACACCTTAAAACTCTTCTGAGTTTACTTGTTTAGTCTATGTTGaataaata 362 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 297 GCTGACACAACACCTTAAAACTCTTTTGAGTTTACTTGTTTAGTCTATGTTGAATAA-TA 355 Query 363 aatatatatataataatCTCTCTCTTTTGACTGAGCTGAATTCTCCAT 410 |||| |||||||||||||||||| || || ||||||||||||||||| Sbjct 356 AATAAATATATAATAATCTCTCT-TTC-GAGTGAGCTGAATTCTCCAT 401 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16635836804 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5