BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G47295.1

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485094 jgi|Araly1|485094|fgenesh2_kg.5__1086__AT3G47295.1         564    2e-160


> Ahg485094 jgi|Araly1|485094|fgenesh2_kg.5__1086__AT3G47295.1
Length=401

 Score =  564 bits (305),  Expect = 2e-160
 Identities = 376/408 (92%), Gaps = 14/408 (3%)
 Strand=Plus/Plus

Query  9    ATTGGATAACCACAACCAGAATCGATTTT-GAATCATCATTTCTATAAATATATACGAC-  66
            ||||||||||||||||||||||  ||||| | | ||||||||||||||||||||||||| 
Sbjct  2    ATTGGATAACCACAACCAGAAT--ATTTTGGTACCATCATTTCTATAAATATATACGACG  59

Query  67   TCATACATACATAT--ACATACCTCTTAAACAAAACTGAGATGAGTTTTGGAACTCGTCT  124
            | ||||||||||||  |||||||||| |||| |||||||||||||||||||| |||||||
Sbjct  60   T-ATACATACATATAAACATACCTCTCAAACCAAACTGAGATGAGTTTTGGATCTCGTCT  118

Query  125  TCTTTTGTTTCTCATACTAA-CACTTCCACTTGTAACATCTTCATCCCCAAACACT-CTT  182
            |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| |||
Sbjct  119  TCTTTTGTTTCTCATACTAATC-CTTCCACTTGTAACATCTTCATCCCAAAACACTCCTT  177

Query  183  CATGTTTCAGGAATTGTGAAGACAGGGACTACAAGTAGATTCTTGATGATGACCATCGAG  242
            | |||||||||| ||| |||||||||||||| |||| ||| ||| ||| |||||||||||
Sbjct  178  C-TGTTTCAGGATTTGGGAAGACAGGGACTAAAAGTGGATCCTTAATGGTGACCATCGAG  236

Query  243  GATTATGACGATCCATCTGCAAACACCAGACACGATCCCAGCGTTCCGACCAATGCAAAG  302
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  GATTATGATGATCCATCTGCAAACACCAGACACGATCCCAGCGTTCCGACCAATGCAAAG  296

Query  303  GCTGACACAACACCTTAAAACTCTTCTGAGTTTACTTGTTTAGTCTATGTTGaataaata  362
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct  297  GCTGACACAACACCTTAAAACTCTTTTGAGTTTACTTGTTTAGTCTATGTTGAATAA-TA  355

Query  363  aatatatatataataatCTCTCTCTTTTGACTGAGCTGAATTCTCCAT  410
            |||| |||||||||||||||||| ||  || |||||||||||||||||
Sbjct  356  AATAAATATATAATAATCTCTCT-TTC-GAGTGAGCTGAATTCTCCAT  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16635836804


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5