BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47420.1 Length=2016 Score E Sequences producing significant alignments: (Bits) Value Ahg937481 jgi|Araly1|937481|scaffold_501672.1 2512 0.0 > Ahg937481 jgi|Araly1|937481|scaffold_501672.1 Length=1613 Score = 2512 bits (1360), Expect = 0.0 Identities = 1532/1616 (95%), Gaps = 7/1616 (0%) Strand=Plus/Plus Query 226 GAACTGAAGAACAAG--TTTTGATGGGTTCTCTAATGCAATCTGAACCAGAGATGGAGAA 283 ||| |||||||| || |||| ||||||||| ||||||||||||| |||||||||||| | Sbjct 1 GAATTGAAGAAC-AGTTTTTTCATGGGTTCTTTAATGCAATCTGAGCCAGAGATGGAGCA 59 Query 284 AAAACCGA-TAGGGATACGATTCTTGGAACGTATCAAAGGCTCAAAGCTCTCTTACAGTG 342 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 60 AAAACC-AGTAGGGATACGATTCTTGGAACGTATCAAAGGCTCAAAGCTCTCTTACAATG 118 Query 343 CTTATCAAGCCATAGTGTTGATCGTGACGTTTCTCGCTTACGCTAGCTATCACGCTGCAA 402 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 119 CTTATCAAGCCATAGTGTTGATCGTGACGTTTCTCGCTTACGCTAGTTATCACGCTGCAA 178 Query 403 GAAAAACAACAAGTATTGTCAAAAGTGCTCTTGATCCTCAATCTCCAGATACAGGACTAA 462 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 179 GAAAAACAACAAGCATTGTCAAGAGTGCTCTTGATCCTCAATCTCCAGATACAGGACTAA 238 Query 463 ACTCACTTCTTTTGAGATTTACTTCGTTTGGTTCCTCTGTAAAAGAAGAAGGTGGTTGGG 522 |||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||| Sbjct 239 ACTCACTTCTTTTGAGGTTTACTTCTTTTGGCTCCTCTGTTAAAGAAGAAGGTGGTTGGG 298 Query 523 CTCC-TTTCAATGGTCCTGATGGTACGGTTTTGCTCGGTGAGATCGATGTTGCGTTTCTT 581 |||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CTCCGTTT-AATGGTCCGGATGGTACGGTTTTGCTCGGTGAGATCGATGTTGCGTTTCTT 357 Query 582 GCGGTTTACGCTTTCGGAATGTATTTCGCTGGACATTTGGGGGATAGGATGAATCTTAGG 641 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 358 GCGGTTTACGCTTTCGGAATGTATTTTGCTGGACATTTGGGAGATAGGATGAATCTTAGG 417 Query 642 ATCTTCTTGACTGTTGGAATGATAGGAACTGGATTGTTTACTTCTCTGTTTGGAGTTGGT 701 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 ATCTTCTTGACAGTTGGAATGATAGGAACTGGATTGTTTACTTCTCTGTTTGGAGTTGGT 477 Query 702 TATTGGGGTAACATTCATAGCTTTTACTATTTCTTGATAATGCAAATGTTAGCTGGTTTG 761 ||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 478 TATTGGGCTAATATTCATAGCTTTTACTATTTCTTGATTATGCAAATGTTGGCTGGATTG 537 Query 762 TTTCAATCTTCGGGTTGGCCATCGGTTGTTGCTGTTGTTGGAAACTGGTTTAACAAGAAG 821 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 538 TTTCAATCTTCGGGTTGGCCATCGGTTGTTGCTGTGGTTGGAAACTGGTTTAACAAGAAG 597 Query 822 AAGAGAGGTTTGATCATGGGGATATGGAATGCTCATACTTCTGTTGGGAACATTACTGGC 881 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 598 AAGAGAGGTTTGATTATGGGAATATGGAATGCTCATACTTCTGTTGGGAACATTACTGGC 657 Query 882 TCGTTGATCGCTGCTGCTATGTTGAGATATGGTTGGGGATGGTCTTTTGTTGTTCCTGGT 941 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 TCGTTGATCGCTGCTGCTATGTTGAGATATGGTTGGGGATGGTCTTTTGTTGTTCCTGGT 717 Query 942 GTTATCATTGTGGTGATTGGTTTGGTGAATTACGCTTTCTTGCCTGTTAGTCCAGAGAAT 1001 ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| | Sbjct 718 GTTATCATTGTGGTGATTGGTTTGGTGAATTTCGCTTTCTTGCCGGTTAATCCAGAGATT 777 Query 1002 GTTGGAGCAGAGCGAGACGAGGTTCTTGATTCTTCGTCTGAGAAAATCGGAAACTCTGTT 1061 ||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||| Sbjct 778 GTTGGAGCAGAGCGAGATGAGGATCTTGATTCGTCGTCTGAGAAGATCGGAAACTCTGTT 837 Query 1062 AATGAGCCGTTACTATTGAGCTCGTCGGATTCGGAAACCGATGACAAGAAACGAGCTGTT 1121 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 AATGAGGCATTACTATTGAGCTCGTCGGATTCGGAAACCGATGACAAGAAACGAGCTGTT 897 Query 1122 GGATTCATTGAAGCGTGGAGGATTCCCGGAGTTGCGCCTTTCGCGCTCTGTCTCTTCTTT 1181 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 898 GGATTCATTGAAGCGTGGAGGATTCCCGGAGTTGCGCCTTTCGCGCTTTGTCTCTTCTTT 957 Query 1182 GCTAAGTTGGTCGCTTACACTTTCCTCTACTGGCTCCCATTTTACGTTAGCCATACAGCG 1241 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 GCTAAATTGGTTGCTTACACTTTCCTCTACTGGCTCCCATTTTACGTTAGCCATACAGCG 1017 Query 1242 ATTGAAGGCGAATATTTATCGGACGAAACAGCGGGAAATCTTTCGACAATGTTCGATGTA 1301 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 ATTGAAGGCGAGTATTTATCGGACGAAACAGCGGGAAATCTTTCGACAATGTTCGATGTA 1077 Query 1302 GGAGGTGTGGTTGGTGGAATCATGGCTGGTTACATTTCAGACCGAATTGGTGCAAGAGCT 1361 ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1078 GGAGGTGTGGTCGGAGGAATCCTGGCTGGTTACATTTCAGACCGAATTGGTGCAAGAGCG 1137 Query 1362 ATTACGGCTGCGAGTTTCATGTACTGCTCAATTCCAGCTTTGTTCTTCTACCGTAGCTAC 1421 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1138 ATTACGGCTGCGAGTTTCATGTACTGCTCAATCCCAGCTTTGTTCTTCTACCGAAGCTAC 1197 Query 1422 GGACATGTATCGTTATTAGCCAACGCGTCTCTCATGTTCTTGACCGGGATGTTGGTTAAC 1481 |||||||| |||||| ||||||| || || ||||||||| | ||||| ||||||||||| Sbjct 1198 GGACATGTTTCGTTACTAGCCAATGCCTCGCTCATGTTCCTAACCGGAATGTTGGTTAAT 1257 Query 1482 GGTCCTTACGCTTTGATTACAACGGCAGTTTCAGCTGATCTTGGAACACACAGCTCGTTG 1541 || ||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1258 GGACCTTACGCTCTGATCACAACGGCAGTTTCAGCCGATCTTGGAACACACAGCTCATTG 1317 Query 1542 AAAGGAAACTCGAGAGCTTTGGCTACGGTAACGGCTATTATCGATGGAACGGGATCCGTT 1601 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1318 AAAGGAAACTCGAGAGCTTTGGCTACGGTAACGGCTATAATCGATGGAACGGGATCAGTT 1377 Query 1602 GGAGCGGCGGTCGGACCCTTACTAACGGGTTACATATCGTCGAGGGGTAGCTGGACCGCG 1661 || || ||||| || || || ||||| |||||||||||||||| ||||||||||| |||| Sbjct 1378 GGTGCTGCGGTTGGGCCATTGCTAACAGGTTACATATCGTCGAAGGGTAGCTGGAGCGCG 1437 Query 1662 GTTTTCACAATGTTGATGGGAGCTGCGTTTGTGGCTGGACTATTGTTGACGAGGCTGGTA 1721 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 GTTTTCACAATGTTGATGGGAGCTGCGTTTGTGGCTGGACTATTGTTGACGAGGCTGGTT 1497 Query 1722 ATGGCCGAAGTAGCGGAGAAGATAGCTGAGTCTAGGCCATCGGAAGAATGTAGATCTCCG 1781 |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| Sbjct 1498 ATGGCCGAAGTAGCGGAGAAGATAGCTGAGTCGAGACCATCGGAGGAATGTAGATCTCCA 1557 Query 1782 GTGGACTATGTCCAAGATCATGTGATGGAAGTGTGATCACCAACTTTGATCGCCAt 1837 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1558 GTGGACTCCGTCCAAGATCATGTGATGGAAGTGTGATCACCAACTTTGATCGCCAT 1613 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75799587550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5