BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47430.1 Length=979 Score E Sequences producing significant alignments: (Bits) Value Ahg485107 jgi|Araly1|485107|fgenesh2_kg.5__1099__AT3G47430.1 1332 0.0 > Ahg485107 jgi|Araly1|485107|fgenesh2_kg.5__1099__AT3G47430.1 Length=953 Score = 1332 bits (721), Expect = 0.0 Identities = 899/979 (92%), Gaps = 35/979 (4%) Strand=Plus/Plus Query 10 TATCAAAACATGAGACAACAAGAGCAAGTATTAG---CCACCACAAAGCAATCATCTTaa 66 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | Sbjct 1 TATCAAAACATGAGACAACAAGAGCAAGTATTAGCCACCACCACAAAGTAATCATCTT-A 59 Query 67 aactcaaaccccaaaacaaacaaaagacaaaacCCGATTGTTTCGAGCACAAACGTCACT 126 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 60 AACTCAAACCTCAAAACAAACAAAAGACAAAACCCGATTACATCGAGCACAAACGTCACT 119 Query 127 TGTGGTTTACATCGTCTTCATCATCTCCATAACTTCATA-TCTCCTCTC-CTTCCGCTGC 184 ||||||||||||||||||||||||||||||||||||||| | ||||||| ||| | || | Sbjct 120 TGTGGTTTACATCGTCTTCATCATCTCCATAACTTCATATTTTCCTCTCTCTT-C-CTTC 177 Query 185 CACCGTTAGCGATGTCTTTGGACACTGTGGACAAACTGGTGGTGTTCTTGGCCAAGAGAG 244 ||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct 178 TACCGTTAGCCATGTCTTTGGACACAGTGGACAAGCTGGTAGTGTTCTTGGCCAAGAGAG 237 Query 245 ACGGAATAGACAAGCTTGTGAAGACATTCCAATACGTGGCCAAGCTCGCGTGCTGGCA-T 303 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 238 ACGGAATAGACAAGCTTGTGAAGACATTCCAATACGTGGCCAAGCTTGCGTGCTGGCGCT 297 Query 304 GTTGAAGCCACACGACCCGAAGCCGCCGATAGGTTCAAGAAGTGGGAGGTCGCCTCCGGT 363 |||| ||||| | ||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 298 -TTGAGGCCACGCAACCGGAAGCCGCCGATAGGTTCAAGAAGTGGGAGGTCGCGTCCGGT 356 Query 364 CTCAGCCGCAAAGCCTTCAGGACCGGGAGATCTCTCACGGGGTTCAATGCGCTGAGACGA 423 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 357 CTCAGCCGCAAAGCCTTCAGGACCGGGAGATCTCTCACGGGATTCAATGCGCTGAGACGA 416 Query 424 AACCCCGGGGCAACCCCGATGATCCGTTTCTTGGCGGTCCTAGCCAATTCAGGGGAAATG 483 |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 417 AACCCCGGGGCAACCCCGGCGATCCGTTTCTTGGCGGTCCTAGCCAATTCAGGAGAAATG 476 Query 484 GTTTACTTCTTCTTT-GATCATTTTCTTTGGTTATCAAGAATTGGTTCAATAGACGCCAA 542 ||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 477 GTTTACTTCTT-TTTCGATCATTTTCTTTGGTTATCAAGAATTGGTACAATAGACGCCAA 535 Query 543 GCTCGCCAAGAAAATGAGTTTCATATCCGCTTTTGGCGAATCTTTCGGCTACACTTTCTT 602 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 536 GCTCGCCAAGAAAATGAGTTTCATCTCCGCTTTTGGCGAATCTTTCGGCTACACTTTCTT 595 Query 603 CATCATCATTGATTGCATCTTCATAAAGCAAAGACTCAAATCCTT-AAAAAAGCTCCAG- 660 |||| ||||||||||||| ||||||| |||||||||||||||||| |||||| |||| | Sbjct 596 CATCGTCATTGATTGCATTTTCATAAGGCAAAGACTCAAATCCTTGAAAAAA-CTCCGGT 654 Query 661 CATTCGACCGATGAACCGAAAGAAGAAATCGGCGCCAAAATTAGCGAGATTCGGGGAGAT 720 ||| | | |||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 655 CAT-C--C-GATGAACCGAAAGACGAAATCGGCGCAAAAATTAGCGAGATTCGGGGAGAT 710 Query 721 ATAGTAATGAGGTTGATGGGAATTTCAGCCAACGTTGCGGATTTACTTATAGCATTGGCA 780 |||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| Sbjct 711 ATAGTAATGAGGTTGATGGGAATTTCTGCCAACATTGCGGATTTACTTATCGCATTGGCA 770 Query 781 GAAATTCACCCAAACCCCTTTTGTAACCACACCATTACACTCGGTATAAGCGGTTTAGTT 840 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 771 GAAATTCACCCAAACCCCTTTTGTAACCACACGGTTACACTCGGTATAAGCGGTTTAGTT 830 Query 841 TCAGCTTGGGCCGGTTGGTATAGGAACTGGCCATCGTGAGATGTAATAAAATCAAATGTT 900 || || |||||||| |||||||| || ||||||||||||||||||||||| | |||||| Sbjct 831 TCGGCATGGGCCGGCTGGTATAGAAATTGGCCATCGTGAGATGTAATAAAGGCTAATGTT 890 Query 901 TGTTGTTTTGAATGAACGTATCAAACGTGTAATGTAACTCACTTGAATATATGAAACATT 960 |||||||| | ||| | | |||||||||||||||||||||||||||||| Sbjct 891 TGTTGTTT-G---GAA--T-------G---AATGTAACTCACTTGAATATATGAAACATT 934 Query 961 TCTATTTTACATTATCTAT 979 ||||||||||||||| ||| Sbjct 935 TCTATTTTACATTATTTAT 953 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36369262818 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5