BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47470.1
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485112 jgi|Araly1|485112|fgenesh2_kg.5__1104__AT3G47470.1 1653 0.0
> Ahg485112 jgi|Araly1|485112|fgenesh2_kg.5__1104__AT3G47470.1
Length=1042
Score = 1653 bits (895), Expect = 0.0
Identities = 998/1046 (95%), Gaps = 13/1046 (1%)
Strand=Plus/Plus
Query 1 AACCGATAAGCCTGTATCT-CCTCTCAAACCAATCTCCTCCGTCAAATCAACCACGTCAT 59
||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||| |||||
Sbjct 1 AACCGATAAGCCTGTATCTCCCT-TCAAACCCATCTCATCCGTCAAATCAACCATGTCAT 59
Query 60 CTAATCCAACGGTAGATACTCAGT-CATCAAACCACAGCCACAAAACTCGTTTCAAGAAA 118
|||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |||
Sbjct 60 CTAATCCAACGGTAGATACTCA-TCCATCAAACCACAGCCACAAAACTCATTTCAACAAA 118
Query 119 CGAATAAACTTACAAAAT-CCCCTCCAAGTCTTATTTCTTCACAACCATCTCTGAAC-TC 176
||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 119 CGAATAAACGTACAAAATCCCCCTCAAAGTCTTATTTCTTCACAATCATCTCTGAACTTC 178
Query 177 ATCTTTCAATCTCTCTTGATTCCAATCCATTCTTCTTCA-AGTGCCGGGTTCTCGGGTCG 235
|||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 179 ATCTCTCTATCTCTCTTGATTCCAATCCATTCTTCTT-ACAGTGCCGGGTTCTCGGGTCG 237
Query 236 GATCTTCTAAGTCTAGCTAGGGATAATGGCTACTGTCACTACTCATGCCTCGGCCTCGAT 295
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 238 GATCTTCTAAGTCTAGCTAGGGATAATGGCGACTGTCACTACTCATGCCTCGGCCTCGAT 297
Query 296 TTTCCGACCTTG---TACTTCAAAGCCAAGATTCCTCACCGGTTCTTCCGGTAGGTTGAA 352
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTTCCGACCTTGTACTACTTCAAAGCCAAGATTCCTCACCGGTTCTTCCGGTAGGTTGAA 357
Query 353 CCGCGACTTGTCGTTTACATCGATCGGTTCATCGGCCAAAACGTCGTCGTTCAAGGTTGA 412
||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||
Sbjct 358 CCGCGACTTGTCGTTTAAATCAATCGGTTCATCGTCCAAAACGTCGTCGTTCAAGGTTGA 417
Query 413 AGCTAAGAAAGGAGAATGGTTGCCCGGTTTGGCATCGCCTGATTATCTCACCGGCAGTCT 472
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGCTAAGAAAGGACAATGGTTGCCCGGTTTGGCATCGCCTGATTATCTCACCGGCAGTCT 477
Query 473 TGCCGGTGACAATGGGTTTGACCCGTTGGGTCTAGCAGAGGATCCAGAGAACTTGAAATG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGCCGGTGACAATGGGTTTGACCCGTTGGGTCTAGCAGAGGATCCAGAGAACTTGAAATG 537
Query 533 GTTCGTCCAGGCAGAGCTGGTCAACGGACGATGGGCTATGCTCGGTGTCGCTGGGATGCT 592
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 GTTCGTCCAGGCAGAGCTGGTCAACGGACGATGGGCCATGCTCGGTGTCGCTGGGATGCT 597
Query 593 TTTGCCGGAAGTTTTCACCAAGATCGGAATCATAAATGTTCCTGAGTGGTACGATGCTGG 652
|||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 598 TTTGCCGGAAGTTTTCACCAAGCTCGGAATCATAAACGTTCCGGAGTGGTACGATGCTGG 657
Query 653 GAAAGAGCAGTATTTTGCATCGTCGTCGACATTGTTCGTGATCGAGTTCATATTGTTTCA 712
|||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 658 GAAAGAGCAGTACTTTGCATCATCTTCGACATTGTTCGTGATCGAATTCATATTGTTTCA 717
Query 713 TTACGTTGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTACGTTGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCC 777
Query 773 TATCTTTAAGCAATACAGCTTACCTAAGGGTGAAGTTGGTTACCCTGGTGGAATCTTTAA 832
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TATCTTCAAGCAATACAGCTTACCTAAGGGTGAAGTTGGTTACCCTGGTGGAATCTTTAA 837
Query 833 CCCGCTTAACTTTGCTCCTACGCAAGAGGCCAAGGAGAAAGAGCTAGCAAACGGGAGGTT 892
||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||
Sbjct 838 CCCGCTTAACTTTGCTCCTACGCTCGAGGCCAAGGAGAAAGAAATCGCAAACGGGAGATT 897
Query 893 GGCGATGTTGGCATTCTTAGGGTTTGTGGTTCAACACAATGTGACTGGAAAAGGACCATT 952
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 898 GGCGATGTTGGCATTCTTAGGGTTTGTGGTTCAACACAATGTGACTGGAAAGGGACCATT 957
Query 953 TGAGAATCTGTTGCAGCACTTGTCTGACCCATGGCACAACACTATTGTCCAAAC-CTTCA 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 958 TGAGAATCTGTTGCAGCACTTGTCTGACCCATGGCACAACACTATTGTCCAAACTCT-CA 1016
Query 1012 ACTAAAGAGTGAAGACAGACTTATGA 1037
|||||||||| |||| |||||||||
Sbjct 1017 ACTAAAGAGTTAAGAGGGACTTATGA 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5