BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47500.1 Length=1717 Score E Sequences producing significant alignments: (Bits) Value Ahg897595 jgi|Araly1|897595|Al_scaffold_0005_1561 1892 0.0 > Ahg897595 jgi|Araly1|897595|Al_scaffold_0005_1561 Length=1350 Score = 1892 bits (1024), Expect = 0.0 Identities = 1253/1361 (92%), Gaps = 25/1361 (2%) Strand=Plus/Plus Query 95 ATGATGATGGAGACTAGAGATCCAGCTATTAAGCTTTTCGGTATGAAAATCCCTTTTCCG 154 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1 ATGATGATGGAGAGTAGAGATCCAGCTATTAAGCTCTTCGGTATGAAAATCCCTTTAACG 60 Query 155 TCGGTTTTTGAATCGGCAGTTACGGTGGAGGATGACGAAGAAGATGACTGGAGCGGCGGA 214 |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 GCGGTTTTTGAATCGTCGGTTACGGTGGAGGATGAGGAAGAAGATGACTGGAGCGGCGGA 120 Query 215 GATGACAAATCACCAGAGAAGGTAACTCCAGAGTTATCAGATAAGAACAACAACAACTGT 274 ||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||| Sbjct 121 GATGACAAATCACCAGATAAGGTAACTCTAGAGATATCAGATAAGAACAACAAGAACTGT 180 Query 275 AACGACAACAGTTT---TAA--C--A--ATTCGAAACCCGAAACCT-TGGACAAAGAGGA 324 ||| |||||||||| || | | ||||||||||||||| || |||| || ||||| Sbjct 181 AACAACAACAGTTTCAACAATTCGAATGATTCGAAACCCGAAA-CTGTGGATAAGGAGGA 239 Query 325 AGCGACATCAACTGATCAGATAGAGAGTAGTGACACGCCTGAGGATAATCAGCAGACGAC 384 ||||||||||| |||||||||||||| || || ||||||||||||||||||||||||| Sbjct 240 GGCGACATCAACCGATCAGATAGAGAGCAGCGATTCGCCTGAGGATAATCAGCAGACGAC 299 Query 385 ACCTGATGGTAAAACCCTAAAGAAACCGACTAAGATTCTACCGTGTCCGAGATGCAAAAG 444 | |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 300 AGCTGACGGTAAAACCCTGAAGAAACCGACTAAGATCCTACCGTGTCCGAGATGTAAAAG 359 Query 445 CATGGAGACCAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTCGTCATTTCTG 504 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TATGGATACTAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTCGTCATTTCTG 419 Query 505 CAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCTGTGGGGGC 564 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 420 CAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCCGTGGGGGC 479 Query 565 AGGACGTCGTAAGAACAAAAGCTCATCTTCTCATTACCGTCACATCACTATTTCCGAGGC 624 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 480 AGGACGTCGTAAGAACAAAAGCTCCTCTTCTCATTACCGTCATATCACTATTTCCGAGGC 539 Query 625 TCTTGAGGCTGCGAGGCTTGACCCGGGCTTACAGGCAAACACAAGGGTCTTGAGTTTTGG 684 ||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||||||| Sbjct 540 TCTAGAGGCTGCGAGGCTTGATCCGGGGTTGCAGGCAAACACCCGGGTCTTGAGTTTTGG 599 Query 685 TCTCGAAGCTCAGCAGCAGCACGTTGCTGCTCCCATGACACCTGTGATGAAGCTACAAGA 744 ||| |||||||| || ||||||| |||||||||||| |||||||||||||||||| | Sbjct 600 TCTGGAAGCTCATCAACAGCACG---CTGCTCCCATGAAACCTGTGATGAAGCTACAGGG 656 Query 745 AGATCAAAAGGTCTCAAACGGTGCTAGGAACAGGTTTCACGGGTTAGCGGATCAACGGCT 804 ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||||| Sbjct 657 AGATCAAAAGGCCTCAAACGGAGCTAGGAACGGGTTTCACGGGTTAGCGGATCAGCGGCT 716 Query 805 TGTAGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAA 864 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 TGTGGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAA 776 Query 865 CAATCACTCAGTGGATGAATCAAGAGCACAAAGCGGCAGTGTTGTTGAAGCACAAATGaa 924 |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 777 CAATCATTCAGTGGATGAATCAAGAGCACAAAGCGGCAGAGTTGTTGACCCACAAATGAA 836 Query 925 caacaacaacaacaaTAACATGAATGGTTATGCTTGCATCCCAGGTGTTCCATGGCCTTA 984 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 837 CAACAACAACAACAA---CATGAATGGTTATGCTTGCATCCCTGGTGTTCCATGGCCATA 893 Query 985 CACGTGGAATCCAGCGATGCCTCCACCAGGTTTTTACCCGCCTCCAGGGTATCCAATGCC 1044 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 894 CACGTGGAATCCAGCGATGCCTCCACCAGGCTTTTACCCGCCTCCAGGGTATCCAATGCC 953 Query 1045 GTTTTACCCTTACTGGACCATCCCAATGCTACCACCGCATCAATCCTCATCGCCTATAAG 1104 |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || Sbjct 954 GTTTTACCCTTACTGGACCATCCCAATGTTATCACCGCATCAATCCTCATCGCCTATGAG 1013 Query 1105 CCAAAA-GTGTTCAAATACAAACTCTCCGACTCTCGGAAAGCATCCGAGAGATGAAGGAT 1163 |||||| | |||||||| |||||||||| ||||||||||||||| |||||||||||| || Sbjct 1014 CCAAAAAG-GTTCAAATCCAAACTCTCCCACTCTCGGAAAGCATTCGAGAGATGAAGAAT 1072 Query 1164 C-ATCGAAAAAGGACAACGAGACAGAGCGAAAACAGAAGGC-CGGGTGCGTTCTGGTCCC 1221 | | |||||||| |||||||||||||||| ||||||| || |||||||||||||||||| Sbjct 1073 CCA-CGAAAAAGAACAACGAGACAGAGCGGAAACAGA-GGAACGGGTGCGTTCTGGTCCC 1130 Query 1222 GAAAACGTTGAGAATAGATGATCCTAACGAAGCAGCAAAGAGCTCGATATGGACAACATT 1281 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1131 AAAAACGTTGAGAATAGACGATCCAAACGAAGCAGCAAAGAGCTCGATATGGACAACATT 1190 Query 1282 GGGAATCAAGAACGA-GGCGATGTGCAAAGCCGGTGGTATGTTCAAAGGGTTTGATCATA 1340 ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| | | Sbjct 1191 GGGAATCAAGAACGAAGG-GATGTGCAAAGCCGGTGGTATGTTCGAAGGGTTTGATAAGA 1249 Query 1341 AGACAAAGATGTATAACAACGACAAAGCTGAGAACTCCCCTGTTCTTTCTGCTAACCCTG 1400 | || |||||| |||||||||| ||||| || || ||||||||||||||||||||||||| Sbjct 1250 AAACGAAGATGAATAACAACGAAAAAGCCGAAAATTCCCCTGTTCTTTCTGCTAACCCTG 1309 Query 1401 CTGCTCTATCAAGATCACACAATTTCCATGAACAGATTTAG 1441 |||||||||||||||||| ||||||||||||||| || ||| Sbjct 1310 CTGCTCTATCAAGATCACTCAATTTCCATGAACAAATATAG 1350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64410604295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5