BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47620.1 Length=1919 Score E Sequences producing significant alignments: (Bits) Value Ahg485126 jgi|Araly1|485126|fgenesh2_kg.5__1118__AT3G47620.1 2422 0.0 > Ahg485126 jgi|Araly1|485126|fgenesh2_kg.5__1118__AT3G47620.1 Length=1855 Score = 2422 bits (1311), Expect = 0.0 Identities = 1709/1881 (91%), Gaps = 108/1881 (6%) Strand=Plus/Plus Query 76 aaaacatcacatataaataaaaaaccaaaaaccctaatttataaaatatatataaaatag 135 |||| ||||||||||||| ||||||| ||||||||||||||||||| | ||||||||||| Sbjct 41 AAAAAATCACATATAAAT-AAAAACC-AAAACCCTAATTTATAAAA-ACATATAAAATAG 97 Query 136 ttatagctccccacttatatatGCAAAAGCCAACATCAAGTATCTTAAATGTCATAATGG 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 98 TTATAGCTCCCCACTTATATATGCAAAAGCCAACATCAAGTATCTTAAATGTCATAATGG 157 Query 196 ACGGTGGAGACAGCGTC------GGAGGAGGAGGAGGAGATGATCACCACCGTCACCTCC 249 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 158 ACGGTGGAGACAGCGTCGGAGGAGGAGGAGGAGGAGGAGACGATCACCACCGTCACCTCC 217 Query 250 ACCATCACCACCGCCCTACTTTCCCTTTTCAACTACTCGGAAAACACGACCCCGACGACA 309 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 218 ACCATCACCACCGCCCTACTTTCCCTTTCCAACTCCTCGGAAAACACGACCCCGACGACA 277 Query 310 ACCAT------CAACAACAACCTTCCCCTTCCTCCTCCTCCTCTCTATTTTCTCTCCATC 363 ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 278 ACCATCAACAACAACAACAACCTTCCCCTTCCTCCTCCTCTTCTCTCTTTTCTCTCCATC 337 Query 364 AACACCAACAATTATCTCAATCGCAACCTCAATC-GCAAT--C-GCAAAAGTCACAACCG 419 |||||||||||||||||||||| ||||| ||| | ||||| | ||||||| |||||||| Sbjct 338 AACACCAACAATTATCTCAATCACAACCCCAA-CAGCAATCGCAGCAAAAGCCACAACCG 396 Query 420 CAGACAACGCAAAAAGAGTTATTACAAACGCAAGAGGAAT---CTGCGGTGGTGGCAGCT 476 |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 397 CAGACAACTCAAAAAGAGTTATTACAAACGCAAGAGGAATCAGCAGCGGTGGTGGCAGCT 456 Query 477 AAAAAGCCACCGTTGAAACGAGCGTCGACGAAAGACCGACACACGAAAGTAGACGGAAGA 536 || ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 457 AAGAAGCCGCCGTTGAAACGAGCGTCGACTAAAGACCGACACACAAAAGTAGACGGAAGA 516 Query 537 GGGAGGAGAATAAGGATGCCGGCGTTATGTGCAGCTAGGGTTTTTCAGCTAACGCGAGAG 596 || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 517 GGAAGGAGGATAAGGATGCCGGCGTTATGTGCAGCTAGGGTTTTTCAGCTGACAAGAGAG 576 Query 597 CTAGGTCATAAATCCGACGGTGAGACAATAGAGTGGCTTCTTCAACAAGCTGAACCATCT 656 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 577 CTTGGTCATAAATCCGACGGTGAGACAATAGAGTGGCTTCTTCAACAAGCTGAACCATCA 636 Query 657 GTAATCGCCGCCACCGGAACCGGAACAATCCCGGCGAATTTCACTTCTTTAAACATCTCT 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 637 GTAATCGCCGCCACCGGAACCGGAACAATCCCGGCGAATTTCACTTCTTTAAACATCTCT 696 Query 717 CTCCGTTCTTCAGGCTCTTCCATGTCTCTTCCTTCTCATTTCCGCTCCGCCGCTTCCACT 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 697 CTCCGTTCTTCAGGCTCTTCCATGTCTCTTCCTTCTCATTTCCGCTCCGCCGCTTCCACT 756 Query 777 TTTAGCCCTAATAACATATTTTCTCCGGCGATGCTTcaacaacaacaacaacaacaacGT 836 ||||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 757 TTTAGCCCTAATAACATGTTTTCTCCGGCGATGCTTCAACAACAACAACAACGA----G- 811 Query 837 GGTGGTGGTGTTGGGTTTCATCATCCCCATCTACAGGGACGTGCACCTACGTCGTCTTTG 896 | |||||||| || ||||| ||||| |||||||| ||||||||| | || ||||||||| Sbjct 812 G-TGGTGGTG--GG-TTTCACCATCCTCATCTACAAGGACGTGCAACGACATCGTCTTTG 867 Query 897 TTTCCTGGTATTGATAACTTCACACCAACGACGTCGTTTTTGAACTTTCATAATCCAACA 956 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 868 TTTCCTGGTATTGATAACTTCACACCAACGACGTCATTTTTGAACTTCCATAATCCGACA 927 Query 957 AAGCAAGAAGGAGATCAAGATTCTGAAGAGTTAAACTCGGAGAAGAAAAGAAGAATCCAA 1016 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 928 AAGCAAGAAGGAGATCAAGATTCAGAAGAGTTAAACTCAGAGAAGAAAAGAAGACTCCAA 987 Query 1017 ACGACGTCGGATTTGCATcaacaacaacaacaacaccaacaTGATCAAATCGGAGGATAT 1076 |||||||||||||||||||||||||| | ||||| ||||||||||||||||||| Sbjct 988 ACGACGTCGGATTTGCATCAACAACA-C--CAACA------TGATCAAATCGGAGGATAT 1038 Query 1077 ACACTTCAATCTAGCAACAGTGGATCTACAGCCACCGCAGCCGCCGCGCAACAAATACCG 1136 || |||||||||||||||||||||||||| |||||||| | || | | ||||||||| Sbjct 1039 ACTCTTCAATCTAGCAACAGTGGATCTACCGCCACCGC--C-GCT-C--AGCAAATACCG 1092 Query 1137 GGAAATTTCTGGATGGTTGCGGCGGCTGCGGCTGCAGGTGGTGGTGGTGGTAATAACAAC 1196 ||||||||||||||||||||||||| | || | ||||||| ||||||||| Sbjct 1093 GGAAATTTCTGGATGGTTGCGGCGG--G----TG--G-TGGTGGT------AATAACAAC 1137 Query 1197 CAAACAGGTGGTCTTATGACAGCTTCTATTGGTA-C--TGG---TGGC-G-G-CGGTGGA 1247 |||||||||||||||||||||||||||||||||| | ||| |||| | | ||||||| Sbjct 1138 CAAACAGGTGGTCTTATGACAGCTTCTATTGGTAGCGGTGGAGGTGGCAGCGGCGGTGGA 1197 Query 1248 GAGCCTGTTTGGACGTTTCCTTCCATTAACACGGCAGCGGCAGCGTTATATAGAAGTGGC 1307 |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| Sbjct 1198 GAGCCTGTTTGGACGTTTCCTTCCATTAACACTGCGGCGGCAGCGTTATACAGAAGTGGC 1257 Query 1308 GTTTCGGGCGTTCCAAGCGGCGCGGTTTCTAGCGGTTTACATTTTATGAATTTCGCAGCG 1367 |||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1258 GTTTCGGGCGTTTCAGGCGGCGCAGTTTCGAGCGGTTTACATTTTATGAATTTCGCAGCG 1317 Query 1368 CCAATGGCATTTCTTACTGGACAACAACAGCTAGCAACAACTAGTAATCATGAGATTAAT 1427 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 CCAATGGCATTTCTTACCGGACAACAACAGCTAGCAACAACTAGTAATCATGAGATTAAT 1377 Query 1428 GAAGATAGTAATAATAATGAAGGAGGAAGAAGTGACGGTGGTGGTGatcatcataataca 1487 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 GAAGATAATAATAATAATGAAGGAGGAAGAAGTGACGGTGGTGGTGATCATCATAATACA 1437 Query 1488 cagagacatcatcatcatcaacaacaaca---tcatcatAATATTCTCTCCGGCTTGAAC 1544 ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1438 CAGAGACATCATCATCATCAACAACAACAACATCATCATAATATTCTCTCCGGTTTGAAT 1497 Query 1545 CAGTACGGACGGCAAGTTTCCGGCGACTCTCAAGCTAGTGGATCACTTGGAGGTGGTGAT 1604 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1498 CAGTACGGACGGCAAGTTTCCGGTGAATCTCAAGCTAGTGGATCACTTGGAGGTGGTGAT 1557 Query 1605 GAGGAGGATCAGCAAGATTAGACACACACAAAAA--CATTTTAACGGTGGGATTTTCTGC 1662 ||||| |||| ||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1558 GAGGACGATCCGCAAGATTAGACACACACAAAAAAACAATTTAACGGTGGGATTTTCTGC 1617 Query 1663 CGACGGCGGTAGCGGTGACGGCGTTCGGCGGCTGTGTAAAACttttgttttcaccgttaa 1722 || ||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1618 CGGCGGCGGTGGCGGTGACGGCGTTCGGCGGCTGTGTAATACTTTTGTTTTCGCCGTTAA 1677 Query 1723 ttttttttattttctgtagtaattttttttGCTAAGTaaaaaaaaaaaaaaaaaCACGTG 1782 |||||| |||||||||||||| | ||| |||| |||| |||||| Sbjct 1678 TTTTTT--ATTTTCTGTAGTAA--------G-TAA--AAAACAAAA--------CACGTG 1716 Query 1783 AGattttctttttaattttgattttttt--------actt-gattttaaatttgattttt 1833 ||||||| |||||| ||||||||||||| |||| ||||| ||||||||||||| Sbjct 1717 AGATTTT-TTTTTAGTTTTGATTTTTTTTTTTGTTTACTTTGATTT-AAATTTGATTTTT 1774 Query 1834 CTTGTGAGTGAGTGATTAAATAGTACACGAGAttttttatgtcaggttttttggattttg 1893 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1775 CTTGTGAGTGAGTGATTAAATAGTACACGAGATTTTTTATGTCAGGTTTTATGGATTTTG 1834 Query 1894 aggagaatatgacactttttt 1914 ||||||||||||||||||||| Sbjct 1835 AGGAGAATATGACACTTTTTT 1855 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72104833785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5