BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47650.1
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485130 jgi|Araly1|485130|fgenesh2_kg.5__1122__AT3G47650.1 778 0.0
> Ahg485130 jgi|Araly1|485130|fgenesh2_kg.5__1122__AT3G47650.1
Length=695
Score = 778 bits (421), Expect = 0.0
Identities = 466/487 (96%), Gaps = 6/487 (1%)
Strand=Plus/Plus
Query 15 GAGAGGAGCCATCTTATCTTTGCTATCGAGTGGGTAAGAAGAATCAGAAAACAGAAAATG 74
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 GAGAGGAGCCATCTTATC--TGCTATCGAGTGGGTAAGAAGAACCAGAAAACAGAAAATG 58
Query 75 GCGAATTCACTATGCTTCTTCTCTTCTCCTCCTACCTTTTGCTTCCAATCTCCAAGCAAA 134
||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 59 GCGAATTCAGTATGCTTCTTCTCTTCTCCTCCTACTTTTTGCTTCCAATCCCCCAGCAAA 118
Query 135 AACCCTAAACCTTCTCACTTCTTCTCAACTAATGATAACACCTCTTCCTTGGTACAGAAG 194
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 119 AACCCTAAACCTTCTCACTTCTTCTCAACTAATAATAACACCTCTTCCTTGGTCCAGAAG 178
Query 195 AGAGAACTGCTTCAGACTTCAAGATCCCAAAGTTTTGAAGTTAAGGCCGCAAACAATAAT 254
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 179 AGAGAACTGCTTCAGACTTCAAAATCCCAAAGTTTTGAAGTTAAGGCCGCAAACAATAAT 238
Query 255 CCTCAGGGCACTAAACCAAACAGTTTAGTTTGTGCAAATTGTGAAGGGGAA-GGTTGTGT 313
|||||| |||||||||| ||||||||||||||||||||||||| | || || ||||||||
Sbjct 239 CCTCAGAGCACTAAACCGAACAGTTTAGTTTGTGCAAATTGTG-ATGGAAACGGTTGTGT 297
Query 314 GGCATGTTCTCAATGCAAAGGAGGTGGTGTGAATTTGATTGATCATTTCAATGGTCAGTT 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGCATGTTCTCAATGCAAAGGAGGTGGTGTGAATTTGATTGATCATTTCAATGGTCAGTT 357
Query 374 TAAAGCTGGTGCACTCTGTTGGCTTTGCAGAGGTAAAAAGGAGGTGTTGTGTGGGGACTG 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TAAAGCTGGTGCACTCTGTTGGCTTTGCAGAGGTAAAAAGGAGGTGTTGTGTGGGGACTG 417
Query 434 CAATGGAGCTGGTTTCATTGGTGGGTTCTTGAGCACCTTCGATGAGTAGTAGAAA-TAAG 492
||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |
Sbjct 418 CAATGGAGCTGGTTTCATTGGTGGGTTCTTGAGCACCTTTGATGAGTAGTTCAAAATA-G 476
Query 493 CTTCTTC 499
|||||||
Sbjct 477 CTTCTTC 483
Score = 257 bits (139), Expect = 7e-68
Identities = 197/222 (89%), Gaps = 15/222 (7%)
Strand=Plus/Plus
Query 539 TCTTTTATAAACCTTAGAAGAAGTAAATCTTTCTCTCTATCAATGCTCTTCTTTACCAAA 598
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 482 TCTTTTATAAACTTTAGAAGAAGTAAATCTTTCTCTCTATCAATGCTCTTCTATACCAAA 541
Query 599 AACATGTATTACTATTTGTTATTGCACACCAAACTTTTGTTGTATTTTTGTTTTTCAGAT 658
|||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 542 AACATGTATTTCTATTTGTTATTGCACACCAAACTTTTATTGTATTGTTGTTTTTCAGAT 601
Query 659 TCTtctctctctctctctcGTTTTTTGTCTTCTACAAATTGC--TA-----AAAGTCTAT 711
|||||||| || | | | |||| ||||||||||||||| || ||||| |||
Sbjct 602 GCTTCTCTC-CT-T-T-T--TTTT--GTCTTCTACAAATTGAAATATTGTTAAAGTTTAT 653
Query 712 AGCACCTCTATGGTAGTCTTGTTGATGGCTTGAAATGTTGAA 753
||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 654 AGCACTTCTATGGAAGTCTTGTTGATGGCTTGAAATGTTGAA 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29049662754
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5