BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47730.1
Length=3302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485135 jgi|Araly1|485135|fgenesh2_kg.5__1127__AT3G47730.1 4477 0.0
Ahg917927 jgi|Araly1|917927|Al_scaffold_0008_2678 1844 0.0
Ahg496336 jgi|Araly1|496336|fgenesh2_kg.8__2152__AT5G61690.1 1184 0.0
> Ahg485135 jgi|Araly1|485135|fgenesh2_kg.5__1127__AT3G47730.1
Length=3133
Score = 4477 bits (2424), Expect = 0.0
Identities = 2781/2951 (94%), Gaps = 34/2951 (1%)
Strand=Plus/Plus
Query 65 GGCCATGACGTTGCAGAGAGGTTTACCTCTTCTCTTGCAACAGTACACGGCGTTGTTCAA 124
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GGCCATGACATTGCAGAGAGGTTTGCCTCTTCTCTTGCAACAGTACACGGCGTTGTTCAA 60
Query 125 GAAAAACCTT-TTGCTTTCATGGCGGAGCAAACGAGCCACGTttcttcagctcttcgctt 183
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 GAAAAACCTTCTT-CTTTCATGGCGAAGCAAACGAGCCACGTTTCTTCAGCTCTTCGCTT 119
Query 184 ctttcttcttcatccttctcatcttctGTATCCAAGCAGCCATGGAGAAGAG-TTTCGCT 242
|||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||| ||
Sbjct 120 CTTTCTTCTTCATCCTCCTCATCTTCTGTATCCAAGAAGCTATGGAGAAGAGCTTT-GCG 178
Query 243 TCCTCCACGGCTCTCAAAACTGTTACGGATCCGACGGCGCTGATATCGCCGCCGATTCCG 302
|| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 179 TCTTCCACGGCGCTCAAAACTGTTACGGATCCGACGGCGTTGATTTCGCCGCCGATTCCG 238
Query 303 CCTTGTGAAGATAAATTCTTCGTGAATCTTCCTTGCTATGACTTTGTTTGGAGCGGTAAT 362
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 239 CCTTGTGAAGATAAGTTCTTCGTGAATCTTCCGTGCTATGACTTTGTTTGGAGCGGAAAT 298
Query 363 CGTAGCTCCAAGGTCACGCAGATTGTTAATGCGATTATGAAGAATAATCCTGGAAGAAGT 422
|||||| ||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 299 CGTAGCCCCAAGGTGACTCAGATTGTTAATGCGATTATGAAGAATAATCCTGGCAGACCA 358
Query 423 ATTCCTATTGAGAAGGTACGATCATTCGTGGATCCTGAAGCGGTAGATACGTGGCTTATG 482
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATTCCTACCGAGAAGGTACGATCATTCGTGGATCCTGAAGCGGTAGATACGTGGCTTATG 418
Query 483 GCGAATCCTTTGTTAGTTCCAGGAGCTTTGCACTTTATTGAAAGAAATGCTACAGTGATA 542
||||| || ||| ||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 419 GCGAACCCGTTGCTAGTTCCAGGAGCTTTGCACTTTGTGGAAAGAAATGCTACAGTAATT 478
Query 543 AGTTATGGTATTCAAACTAACTCAACTCCAGAGATGAATAGAGGAAGGTTTGAAGATCCT 602
|||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 479 AGTTATGGTATTCAAACTAATTCAACACCAGAGATGAATAGAGGAAGATTTGAAGATCCC 538
Query 603 ACTTTTAAGTTTCAGATACCTCTTCAAATTGCGGCTGAGCGTGAAATCGCGAGGTCGTTG 662
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 539 ACTTTCAAGTTTCAGATACCGCTTCAAATTGCGGCTGAGCGTGAAATCGCGAGGTCTTTA 598
Query 663 ATAGGAGATCCGAACTTTAATTGGGTTGTTGGGTTTAAGGAGTTTCCTCACCCAACTATT 722
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 599 ATAGGAGATCCAAACTTTAACTGGGTTGTTGGGTTTAAGGAGTTTCCGCACCCAACTATC 658
Query 723 GAAGCTATTGTTGCGTTGGACACTATAGGACCGACTTTTTTCCTTGCGGTTGCTATGTTT 782
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 659 GAAGCTATTGTTGCGTTGGACACTATAGGACCGACTTTTTTCCTTGCTGTTGCGATGTTT 718
Query 783 GGTTTTGTACTTCAGATTAGTTCTTTGATTACTGAGAAAGAGCTTAAACTTCGCCAGGCA 842
|||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 719 GGTTTTGTTCTTCAGATTAGTTCTCTGATCACTGAGAAAGAGCTCAAACTTCGCCAGGCA 778
Query 843 ATGACGATGATGGGTGTTTTTGACACTGCTTATTGGTTGTCATGGCTTACTTGGGAAGGA 902
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 779 ATGACGATGATGGGTGTTTTTGACACTGCTTATTGGTTGTCATGGCTTACCTGGGAAGGA 838
Query 903 ATTCTTACTGCCATCTCGGCGCTCCTGACGGTTCTGTTTGGAATGATGTTCCAGTTCGAC 962
|||||||||||||| || ||||| |||| ||||| ||||||||||||||||||||||||
Sbjct 839 ATTCTTACTGCCATATCAGCGCTTTTGACAGTTCTCTTTGGAATGATGTTCCAGTTCGAC 898
Query 963 TTTTTCTTGAAGAACAGTTTCCCTGTTGTCTTCCTACTTTTCATGCTTTTCCAGTTTAAT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTTTTCTTGAAGAACAGTTTCCCTGTTGTCTTCCTACTTTTCATGCTTTTCCAGTTTAAT 958
Query 1023 TTGATTGGACTAGCATTCATGCTATCAGCTTTTATCAGTAAATCAACTTCAGCAACAACT 1082
|||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||||
Sbjct 959 CTGATTGGACTAGCATTCATGTTATCAGCTTTTATCAGCAAATCATCGTCAGCAACAACT 1018
Query 1083 GTCGGTTTCTTTGTGTTTCTGGTTGGCTTTGTAACACAGCTTGCAACATCAAGTGGGTTT 1142
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1019 GTCGGCTTCTTTGTGTTTCTGGTTGGCTTTGTAACACAGCTTGCAACATCAACTGGGTTT 1078
Query 1143 CCCTATGCCAAGAAGTATTCTCGTATGATCAGGGCACTTTGGTCACTGTTCCCACCCAAT 1202
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 1079 CCCTATGCCAAGAAGTATTCTCGCATGATCAGGTCGCTTTGGTCACTGTTCCCACCCAAT 1138
Query 1203 ACCTTTTCTCAGGGTTTAAAGTTGCTCGCTGATGCAACTTCAACTCCTCAAGATCCTGGT 1262
||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1139 ACCTTTTCTCAGGGTCTAAAGCTGCTTGCTGATGCAACTTCAACTCCTCAAGATCCTGGT 1198
Query 1263 ATTAGTTGGAGTAAAAGAGCAGAATGCGGTCCTAACGACGACACTGGTTGTGTGCTTACA 1322
|||||||||||||| |||||||||||||| || ||||| ||||||| ||||||| |||||
Sbjct 1199 ATTAGTTGGAGTAAGAGAGCAGAATGCGGACCCAACGAGGACACTGATTGTGTGATTACA 1258
Query 1323 ATTAATGATATCTACTTGTGGCTTCTTGGGACTTTCTTTTTGTGGTTTGTTTTGGCTCTT 1382
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1259 ATTAATGATATCTACTTGTGGCTTCTTGGGACATTCTTTTTGTGGTTTGTTTTGGCTCTT 1318
Query 1383 TACTTTGACAATATAACTCCAAATGCTTCTGGAGTAAGAAAATCTATCTTCTACTTTCTA 1442
||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 1319 TACTTCGACAATATTACTCCAAATGCGTCTGGTGTAAGGAAATCTATCTTTTACTTTCTA 1378
Query 1443 AAACCTGGGTACTGGACCGGCAAAGGTGGCAACCGAGTAGAAGAAGGTGGAATTTGTAGT 1502
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AAACCTGGTTACTGGACCGGTAAAGGTGGCAACCGAGTAGAAGAAGGTGGAATTTGTAGT 1438
Query 1503 TGTATTGGTTCAGTTCCACCTGTGGATCACATTACCCCAGATGACGAAGATGTCCTTGAA 1562
|||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1439 TGTACTGGTTCAGTCCCACCTGTGGATCACGTTACCCCAGATGACGAAGATGTCCTTGAA 1498
Query 1563 GAGGAAACTTTAGTTAAACAACATTCAATGGAGGGTTTAGTTGATCCCAACGTTGCAGTT 1622
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1499 GAGGAAACTTTAGTTAAACAACATTCAATGGATGGTTTAGTTGATCCCAACATTGCAGTT 1558
Query 1623 CAAATACGTGGTCTTGCAAAGACTTATCCTGGGACGACGAAGTTTGGATGCTGCAAATGC 1682
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1559 CAAATACGTGGTCTTGCAAAGACTTATCCTGGGACGACGAATTTTGGATGCTGCAAATGC 1618
Query 1683 AAGAAAACTTCCCCTTTTCATGCTCTGAAGGGTTTGTGGATGAATATTGCCAAAGATCAA 1742
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1619 AAGAAAACTCCCCCTTTTCATGCTCTGAAGGGGTTGTGGATGAATATTGCCAAAGATCAG 1678
Query 1743 TTATTCTGTCTTCTTGGACCCAATGGTGCAGGGAAAACAACTACTATCAATTGTTTGACA 1802
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1679 TTATTCTGTCTTCTTGGACCCAATGGCGCAGGAAAAACAACTACTATCAATTGTTTGACA 1738
Query 1803 GGCTTATTTCCAGTTACTGGTGGTGATGCACTAATTTATGGAAATTCTATAAGAAGCTCT 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 GGCTTATTTCCAGTTACTGGTGGTGATGCACTAATTTATGGAAATTCTATAAGAAGCTCT 1798
Query 1863 GTTGGTATGTCCAACATCCGTAAAATGATTGGAGTTTGTCCTCAGTTTGATATTCTTTGG 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 GTTGGTATGTCCAACATCCGTAAAATGATTGGAGTTTGTCCTCAGTTTGATATTCTTTGG 1858
Query 1923 GATGCTTTGTCTGGTGAAGAACACCTCAAACTCTTTGCTAGCATCAAAGGGTTGCCACCT 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GATGCTTTGTCTGGTGAAGAACACCTCAAACTCTTTGCTAGCATCAAAGGGTTGCCACCT 1918
Query 1983 TCATCAATCAACTCGATGGTTGAGAAGTCACTGGCGGAGGTAAAACTAACAGAAGCAGGG 2042
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1919 TCATCGATCAACTCGATGGTTGAGAAGTCACTAGCGGAGGTAAAACTGACAGAAGCAGGG 1978
Query 2043 AAAATCAGGGCAGGAAGTTACAGTGGAGGAATGAAACGGCGACTCAGTGTTGCAGTTTCT 2102
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1979 AAAATCAGGGCAGGAAGTTACAGTGGAGGAATGAAGCGCCGACTCAGTGTTGCAGTTTCA 2038
Query 2103 CTCATTGGTGATCCAAAGCTGGTCTTCCTGGACGAACCTACTACAGGCATGGACCCGATC 2162
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 2039 CTCATTGGTGATCCAAAGCTGGTCTTCCTGGACGAACCGACTACAGGCATGGATCCGATC 2098
Query 2163 ACGAGGAGACATGTGTGGGATATCATACAGGAAACCAAGAAAGGTCGTGCCATTATACTA 2222
|| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2099 ACCAGGAGGCATGTGTGGGATATTATACAGGAAACCAAGAAAGGCCGTGCCATTATACTA 2158
Query 2223 ACAACACATTCGATGGAAGAAGCTGATATCTTAAGTGATCGGATAGGGATAATGGCTAAG 2282
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2159 ACGACACATTCGATGGAGGAAGCTGATATATTAAGTGATCGGATAGGGATAATGGCTAAG 2218
Query 2283 GGTAGGCTCCGCTGCATTGGAACCTCGATCAGGTTGAAATCCCGCTTTGGCACAGGTTTC 2342
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2219 GGTAGGCTCCGCTGCATTGGAACCTCGATCAGATTGAAATCCCGCTTTGGCACAGGTTTT 2278
Query 2343 ATTGCTAACATTAGCTTTGTTGAAAGCAACAACCA------CAATGGCGA-AGC-----T 2390
||||||||||| ||||||||||||||||||||||| ||||||| | | | |
Sbjct 2279 ATTGCTAACATCAGCTTTGTTGAAAGCAACAACCAAGAAAACAATGGCAATAACCACAAT 2338
Query 2391 GG------T--T-C-G--GATTCACGCGAGCCAGTGAAGAAATTCTTTAAAGATCATCTC 2438
|| | | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 GGGGAAAATGGTGCTGTCGATTCACGCGAGCCAGTGAAGAAATTCTTTAAAGATCATCTC 2398
Query 2439 AAAGTCAAACCAATAGAAGAAAACAAGGCCTTCATGACTTTTGTTATACCTCACGACAAA 2498
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2399 AAAGTCAAACCAATAGAAGAAAACAAGGCCTTCATGACTTTTGTTATACCACACGACAAA 2458
Query 2499 GAGAATCTTTTGACAAGCTTTTTCGCTGAGCTTCAAGACAGAGAAGAAGAATTTGGAATC 2558
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2459 GAGAATCTTTTGACAGGCTTTTTCGCTGAGCTTCAAGACAGAGAAGAAGAATTTGGAATC 2518
Query 2559 TCAGATATCCAACTTGGTCTTGCTACTCTTGAAGAAGTCTTTTTGAACATAGCAAGAAAA 2618
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2519 TCAGATATCCAACTTGGTCTCGCAACTCTTGAAGAAGTCTTTTTGAACATAGCAAGAAAA 2578
Query 2619 GCTGAACTCGAAAGCGCTGCGGTTGATGGAACAATGGTCACTCTCGA-CTTAACATCTGG 2677
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2579 GCTGAACTCGAAAGCGCTGCGGTTGATGGAACAATGGTCACTCTCGATCT-AACATCTGG 2637
Query 2678 TTCTTCAGTCGAGATACCGGTAGGGGCAAGATTTATCGGGATACCGGGAACAGAAACTGC 2737
||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||
Sbjct 2638 TTCCTCAGTTGAGATACCGGTGGGGGCAAGATTTATTGGGATACCGGGAACAGAATCTGC 2697
Query 2738 AGAGAATCCACGAGGAGTCATGGTGGAGGTGTATTGGCAACAAGACGAGTCAGGATCATT 2797
|||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2698 AGAGAATCCACGAGGAATCATGGTGGAAGTGTATTGGCAACAAGACGAGTCAGGTTCATT 2757
Query 2798 GTGCATCTCAGGACACTCCACAGAGATGCCAATTCCTGAAAACATTCCCGTGACAGATCC 2857
||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||
Sbjct 2758 GTGCATCTCAGGACACTCCACGGAGATGCCAGTTCCTGAAAATATTCCCATGACAGATCC 2817
Query 2858 GGTGGCACCAGGACATGGCGGAGTAAACTTGTTGGGACGGAGAGGACGAAGACAAGTTCA 2917
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2818 GGTGGCACCAAGACATGGCGGAGTAAACTTGTTGGGAAGGAGAGGACGAAGACAAGTTCA 2877
Query 2918 GGGAATTGTGATTGATCCTGAGTTTGCTA-CTTT-TACTAGAAGCGGTTCCACTTCTTCC 2975
||| ||||||||||| ||||||||||||| |||| | ||||||||||||||| ||||||
Sbjct 2878 GGGGATTGTGATTGACCCTGAGTTTGCTAGCTTTGT--TAGAAGCGGTTCCACATCTTCC 2935
Query 2976 CGACGTTTTTC 2986
||||| |||||
Sbjct 2936 CGACGCTTTTC 2946
Score = 244 bits (132), Expect = 2e-63
Identities = 185/209 (89%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 2997 TCTTCCCGACGTTTTTCATCGTGAATTGAAATATAATCCG-CC-CGCATACACATACACT 3054
||||||||||| ||||||| ||||| ||||||||||| || || |||| ||||| | ||
Sbjct 2930 TCTTCCCGACGCTTTTCATTGTGAAATGAAATATAATGCGCCCGCGCAGACACA-A-ACA 2987
Query 3055 CACAGTTCTTAACTTAAC-GGATTGCGCTCTACAGGTTTTTCTGGTTCGTTGTTGTAGTT 3113
||| ||||||||||| || ||| | |||||||||||||||||| |||||||||||||||
Sbjct 2988 CACTGTTCTTAACTT-ACTGGACTAAGCTCTACAGGTTTTTCTGATTCGTTGTTGTAGTT 3046
Query 3114 TTATACGAGGAAAATCACAGGCGTGTTTATTTGAAATT-GTGTTTTACGTAATTATGATG 3172
|||||||| ||||||||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct 3047 TTATACGAA-AAAATCACAGGAGTGTTTATTT-AAATTTGTGTTTTACGTAATTATGATG 3104
Query 3173 TAAATTAGACTGAAGTTTGTGATTaaaaa 3201
||||||||| ||||||||||||||||||
Sbjct 3105 TAAATTAGAAGGAAGTTTGTGATTAAAAA 3133
> Ahg917927 jgi|Araly1|917927|Al_scaffold_0008_2678
Length=2865
Score = 1844 bits (998), Expect = 0.0
Identities = 2208/2781 (79%), Gaps = 128/2781 (5%)
Strand=Plus/Plus
Query 110 CACGGCGTTGTTCAAGAAAAACCTTTTGCTTTCATGGCGGAGCAA-ACGAGCCACGTttc 168
||| || ||||||||||| || || ||||||||||||| | ||| || |||||||| ||
Sbjct 42 CACAGCTTTGTTCAAGAAGAATCTACTGCTTTCATGGCGAAACAAGAC-AGCCACGTGTC 100
Query 169 ttcagctcttcgcttctttcttcttcatccttctcatcttctGTATCCAAGCAGCCATGG 228
|||| |||||| |||| |||||||||||||| |||||||||| |||| | | | | |
Sbjct 101 TTCATCTCTTCTCTTCGTTCTTCTTCATCCTCCTCATCTTCTCTATCGAGGAATCTA-CC 159
Query 229 AGAAGAGTTTCG-CTT--CCTCCACGGCTCTCA-AAACTGTTACGGATCCGACGGCGCTG 284
| ||| | || || |||| || | | || ||| ||| || ||||| | || |
Sbjct 160 A-AAGCG-AGCGAGTTAACCTCGACTACGCACAGAAA-TGTCACAGATCCTAAAGC-ATT 215
Query 285 A-TATCGCCGCCGATTCCGCCTTGTGAAGATAAATTCTTCGTGA-ATCTTCCTTGCTATG 342
| | || | || |||||||| ||||| ||||| || ||||||| | ||||| || | ||
Sbjct 216 AGTCTCTCTTCCAATTCCGCCATGTGAGGATAAGTTTTTCGTGAGA-CTTCCATGTTTTG 274
Query 343 ACTTTGTTTGGAGCGGTAATC-GTAGCTCCAAG-GTCAC-GCAGATTGT-TAATGCGATT 398
|||| || ||||| || || | | ||| | | || || | | ||||| | ||| |||
Sbjct 275 ACTTCGTGTGGAGTGGGAACCAG-AGC-CGTCGTGTGACTG-ACATTGTCT-CTGCAATT 330
Query 399 ATGAAGAATAATCCTGGAAGAAGTATTCCTATTGAGAAGGTACGATCATTCGTGGATCCT 458
||| || ||||| ||| || ||||| | | ||||| | |||||| | |||
Sbjct 331 ATGGCTAACAATCCAGGACGACCAATTCCGAGCAATAAGGTTCAATCATTTAAAAAGCCT 390
Query 459 GAAGCGGTAGATACGTGGCTTATGGCGA-ATCCTTTGTTAGTTCCAGGAGCTTTGCACTT 517
|| | |||||| | ||| ||||| | | |||| ||| ||| |||||||||||||| ||
Sbjct 391 GAGGAAGTAGATGCATGGTTTATGTC-ACATCCATTGCAAGTACCAGGAGCTTTGCATTT 449
Query 518 TATTG-AAAGAAATGCTACAGTGATAAGTTATGGTATTCAAACTAACTCAAC-TCCAGAG 575
| | | |||| ||||||||||||||||| ||||| |||||||| ||||| | | | |||
Sbjct 450 TGTGGAAAAG-AATGCTACAGTGATAAGCTATGGAATTCAAACAAACTCTTCAT-CGGAG 507
Query 576 ATGAATA-GAGGAAGGTTTGAAGATCCTACTTTTAAGTTTC-AGATACCTCTTCAAATTG 633
| || | | || || |||||||||||| |||||||| | | | ||||||||||| |
Sbjct 508 A-AAAAACGTGGTCGGCGTGAAGATCCTACGTTTAAGTTCCTTG-TTCCTCTTCAAATCG 565
Query 634 CGGCTGAGCGTGAAATCGCGAGGTCGTTGATAGGAGATCCGAACTTTAATT-GGGTTGTT 692
| || ||||| ||||| || ||||| || || |||||||| || |||| || ||||| |
Sbjct 566 CTGCAGAGCGCGAAATAGCAAGGTCTTTAATTGGAGATCCAAAGTTTAGTTGGGGTT-CT 624
Query 693 GGGTTTAAGGAGTTT-C-C-TCAC-CCAACT-AT--TG-A--AGCTA-TTGTTGCGTTGG 741
|| |||||||| ||| | | || | | | | || | | | | || ||| ||
Sbjct 625 GGATTTAAGGAATTTGCGCGTC-CGGGGATTGGTGGTGTAGTAACCACTT-CTGCATTTT 682
Query 742 ACAC-TATAGGACCGACT-TT-TTTCCTTGCGGTTGCT--ATGTTTGGTTTTGTACTTCA 796
| | ||| ||||| | | || ||| ||||| || || |||||||||||||| || ||
Sbjct 683 A-TCTTATGGGACC-AGTGTTCTTT-CTTGC--TTTCTCCATGTTTGGTTTTGTTCTCCA 737
Query 797 GA-TTAGTTCTTTGATTACTGAGAAAGAGCTTAAACTTCGCCAGGCAATGACGATGATGG 855
| | ||||| || |||| ||||||||||| ||||||||| |||||||||| | |||||
Sbjct 738 -ACTCGGTTCTGTGGTTACCGAGAAAGAGCTAAAACTTCGCGAGGCAATGACAACGATGG 796
Query 856 GTGTTTTTGACACTGCTTATTGGTTGTCATGG--CTTACTTGGGAAGGAATTCTTA-CTG 912
|||||| ||| |||| ||||||||||||||| |||| ||||||||||| |||| ||
Sbjct 797 GTGTTTATGATTCTGCATATTGGTTGTCATGGCTCTTA--TGGGAAGGAATCCTTACCT- 853
Query 913 CCATCTCGGCGCTCCTGACGGTTCTGTTTGGAATGATGTTCCAGTTCGACTTTTTCTTGA 972
|||| | ||| | ||| || |||||||||||||||||||| || ||||||||||
Sbjct 854 TTGTCTCCTCACTCTTCTTGGTCCTCTTTGGAATGATGTTCCAGTTTGATTTTTTCTTGA 913
Query 973 AGAACAGTTTCCCTGTTGTCTTCCTACTTTTCATGCTTTTCCAGTTTAATTTGATTGGAC 1032
|||||||||| | ||||||||||||||||| | ||||| ||||||||| ||||||| |
Sbjct 914 AGAACAGTTTTGTTCTTGTCTTCCTACTTTTCTTTCTTTTTCAGTTTAATATGATTGGCC 973
Query 1033 TAGCATTCATGCTATCAGCTTTTATCAGTAAATCAACTTCAGCAACAACTGTCGGTTTCT 1092
|||||||| |||||| || | || || |||||| |||| ||||||||||| ||||||
Sbjct 974 TAGCATTCGCGCTATCCTCTATCATTAGCAAATCATCTTCGGCAACAACTGTTGGTTTCC 1033
Query 1093 TTGTGTTTCTGGTTGGCTTTGTAACACAGCTTGCAACATCAAGTGGGTTTCCC-TATGCC 1151
|||||||||||||||| ||| |||||||| ||| |||| | | | || ||||| ||| |
Sbjct 1034 TTGTGTTTCTGGTTGGTTTTATAACACAGATTGTAACAGCTACT-GGATTCCCTTAT-TC 1091
Query 1152 AAGAAG-T-AT-TCTCGTA-T-G-ATCAG-G-GCACTTTGGTCACTGTTCCCACCCAATA 1203
| || | || | ||| | | | | | | | | | |||||||||| || ||||| ||||
Sbjct 1092 --G-AGCTCATAT-TCG-ATTGGTAGCCGTGTG-A-TTTGGTCACTCTTTCCACCGAATA 1144
Query 1204 CCTTTTCT-CAGGGTTTAAAGTTGC-TCGCTGATGCAACTTCAACTCCTC-AAGATCCTG 1260
|||||||| | |||| | || ||| || ||| || || ||| |||| | |||| |||
Sbjct 1145 CCTTTTCTGC-GGGTCTGCAGCTGCTTC-TTGAGGCGACATCATCTCC-CGGAGATTCTG 1201
Query 1261 GTATTAGTTGGAGTAAAAGAGCAGA-ATGCGGTCCTAACGACGA-CACTGGTTGTGTGCT 1318
| |||||||||||| |||||||| | ||| | ||| || ||| ||| | |
Sbjct 1202 GAATTAGTTGGAGTGAAAGAGCA-ATATGTGCAGGGGGCGA-GAGCAC---TTGCATTAT 1256
Query 1319 TACAATTAATGATATCTACTTGTGGCTTCTTGGG-ACTTTCTTTTTGTGGTTTGTTTTGG 1377
||||| |||| | |||||| | |||| || |||| || |||||||| |||||||| ||||
Sbjct 1257 TACAACTAATAAAATCTACATATGGC-TCGTGGGAACGTTCTTTTTCTGGTTTGTATTGG 1315
Query 1378 CTCTTTACTTTGACAATAT-AACTCCAAATGCTTCTGGAGTAAGAAAATCTATCTTCTAC 1436
|||| ||||||||||| || | | || ||||| || || || |||||||| |||||||||
Sbjct 1316 CTCTCTACTTTGACAACATCATC-CCCAATGCATCCGGTGTGAGAAAATCGATCTTCTAC 1374
Query 1437 TTTCTAAAACCTGGGTACTGGACCGGCAAAGGTGGCAACCGAGTAGAAGAAGGTG-GAAT 1495
|||||||||||| | || ||||| ||||||| |||||| ||| |||||||| | | ||
Sbjct 1375 TTTCTAAAACCTAGTTATTGGACTGGCAAAGAAGGCAACAAAGTGGAAGAAGG-GAGCAT 1433
Query 1496 TTGTAGTTGTATTGGTTCAGTTCCACCTGTGGATCACATTACCCCAGATGACGAAGATGT 1555
|||||| ||||||||||||||||||| ||| || || ||||| ||||| |||||||||||
Sbjct 1434 TTGTAGCTGTATTGGTTCAGTTCCACATGTAGAGCATATTACACCAGAGGACGAAGATGT 1493
Query 1556 CCTTGAAGAGGAAACTTTAGTTAAACAACATTCAATGGAGGGTTTAGTTGATCCCAACGT 1615
||||||||||| | ||||||||||||||| ||||||| || |||||||||| ||| |
Sbjct 1494 GCTTGAAGAGGAGATTTTAGTTAAACAACAAGCAATGGATGGAATAGTTGATCCTAACAT 1553
Query 1616 TGCAGTTCAAATACGTGGTCTTGCAAAGACTTATCCTGGGACGACGAAGTTTGGATGCTG 1675
||||||||| |||| ||||||||||||||| ||||||||||| || ||| ||||||||||
Sbjct 1554 TGCAGTTCAGATACATGGTCTTGCAAAGACATATCCTGGGACTACAAAGCTTGGATGCTG 1613
Query 1676 CAAATGCAAGAAAACTTCCCCTTTTCATGCTCTGAAGGGTTTGTGGATGAATATTGCCAA 1735
|||||||| |||||||| |||||||||||| | |||||||||||| |||||||||||||
Sbjct 1614 CAAATGCACCAAAACTTCGCCTTTTCATGCTGTAAAGGGTTTGTGGCTGAATATTGCCAA 1673
Query 1736 AGATCAATTATTCTGTCTTCTTGGACCCAATGGTGCAGGGAAAACAACTACTATCAATTG 1795
|||||| || || |||||||||||||||||||| || |||||||||||||| || | |||
Sbjct 1674 AGATCAGTTGTTTTGTCTTCTTGGACCCAATGGCGCTGGGAAAACAACTACGATTAGTTG 1733
Query 1796 TTTGACAGGCTTATTTCCAGTTACTGGTGGTGATGCACTAATTTATGGAAATTCTATAAG 1855
|||||| ||| || |||||| |||||||| |||||| ||||||| |||||||| |||||
Sbjct 1734 TTTGACTGGCATAAATCCAGTCACTGGTGGGGATGCAATAATTTACGGAAATTCCATAAG 1793
Query 1856 AAGCTCTGTTGGTATGTCCAACATCCGTAAAATGATTGGAGTTTGTCCTCAGTTTGATAT 1915
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1794 AAGCTCTGTTGGTATGTCCAACATTCGTAAAATGATAGGAGTTTGTCCTCAGTTTGATAT 1853
Query 1916 TCTTTGGGATGCTTTGTCTGGTGAAGAACACCTCAAACTCTTTGCTAGCATCAAAGGGTT 1975
||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||
Sbjct 1854 TCTTTGGGATGCTTTGTCTAGTGAAGAGCACCTCCACCTCTTTGCTAGCATCAAAGGGTT 1913
Query 1976 GCCACCTTCATCAATCAACTCGATGGTTGAGAAGTCACTGGCGGAGGTAAAACTAACAGA 2035
||||| |||| ||||| ||||| | | |||| |||||| || ||||| |||| |||
Sbjct 1914 ACCACCAGCATCGATCAAATCGATTGCAGTCAAGTTACTGGCAGATGTAAAGCTAATAGA 1973
Query 2036 AGCAGG-GAAAATCAGGGCAGGAAGTTACAGTGGAGGAATGAAACGGCGACTCAGTGTTG 2094
||| || |||||| || ||||||||||||||||| ||||||||||| ||||| || ||||
Sbjct 1974 AGC-GGCGAAAATTAGAGCAGGAAGTTACAGTGGTGGAATGAAACGTCGACTAAGCGTTG 2032
Query 2095 CAGTTTCTCTCATTGGTGATCCAAAGCTGGTCTTCCTGGACGAACCTACTACAGGCATGG 2154
|| | | |||||||||||||| |||||||| || || || ||||| || || || ||||
Sbjct 2033 CAATAGCACTCATTGGTGATCCCAAGCTGGTTTTTCTAGATGAACCGACAACGGGTATGG 2092
Query 2155 ACCCGATCACGAGGAGACATGTGTGGGATATCATACAGGAAACCAAGAAAGGTCGTGCCA 2214
|||| |||||||| |||||||||||||| || ||||| ||| | |||||||||||||| |
Sbjct 2093 ACCCTATCACGAGAAGACATGTGTGGGACATTATACAAGAATCAAAGAAAGGTCGTGCAA 2152
Query 2215 TTATACTAACAACACATTCGATGGAAGAAGCTGATATCTTAAGTGATCGGATAGGGATAA 2274
| |||||||| || ||||| ||||||||||||||||| ||| |||| || |||||||| |
Sbjct 2153 TCATACTAACGACGCATTCTATGGAAGAAGCTGATATTTTAGGTGACCGAATAGGGATCA 2212
Query 2275 TGGCTAAGGGTAGGCTCCGCTGCATTGGAACCTCGATCAGGTTGAAATCCCGCTTTGGCA 2334
||||||| || ||||||||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 2213 TGGCTAAAGGCAGGCTCCGCTGCATTGGAACCTCAATCAGGTTAAAATCTCGCTTTGGAA 2272
Query 2335 CAGGTTTCATTGCTAACA-TTAGCTTTGTTGAAAGCAACAACCACAATGGCGAAGCTGGT 2393
| ||||| ||| ||| | ||||||| |||| ||| || ||| || | | | | |
Sbjct 2273 CGGGTTTTATTACTA-CGGTTAGCTTCCCCGAAAACAAAAAAGACAGTG-CTA-GAAG-T 2328
Query 2394 TCGGATTCACGCGAGCCAGTGAAGAA-ATTCTTTAAAGATCATCTCAAAGTCAAACCAAT 2452
| ||||| ||||||| |||| || ||||||||| || ||||| ||||| | ||||
Sbjct 2329 AC---TTCACCCGAGCCATTGAA-AAGATTCTTTAAGGAGCATCTAAAAGTTGAGCCAAC 2384
Query 2453 AGAAGAAAACAAGGCCTTCATGACTTTTGTTATACCTCACGACAAAGAG-AATCTTTTGA 2511
|||||||| ||| || ||||||||||||||||| || |||||||||||| || |||||||
Sbjct 2385 AGAAGAAAGCAAAGCTTTCATGACTTTTGTTATCCCACACGACAAAGAGCAA-CTTTTGA 2443
Query 2512 CAAGCTTTTTCGCTGAGCTTCAAGACAGAGAAGAAGAATTTGGAATCTCAGATATCCAAC 2571
| | |||||||| ||||| ||||| |||||| |||||||| |||||||| || || |
Sbjct 2444 CGGGGTTTTTCGCGGAGCTACAAGATAGAGAATCTGAATTTGGCATCTCAGACATTCAGC 2503
Query 2572 TTGGTCTTGCTACTCTTGAAGAAGTCTTTTTGAACATAGCAAGAAAAGCTGAACTCGAAA 2631
| |||||||| |||||||||||||| |||||||||||||| ||| |||||||| ||||
Sbjct 2504 TCGGTCTTGCCACTCTTGAAGAAGTGTTTTTGAACATAGCTAGACGTGCTGAACTAGAAA 2563
Query 2632 GCGCTGCGGTTGATGGAACAATGGTCACTCTCGACTTA-ACATCTGGT-TCTTCAGTCGA 2689
|||| | ||||| ||||| |||||||||||||| ||| | ||| || || |||||||
Sbjct 2564 GCGCAACTGTTGAAGGAACCATGGTCACTCTCGAGTTAGA-ATCAGGCATCG-CAGTCGA 2621
Query 2690 GATACCGGTAGGG-GCAAGATTTATCGGGATACCGGGAACAGAAA-CTGCAGAGAATCCA 2747
|||||| || ||| ||||||||| | || || || |||||||||| | ||||||||||||
Sbjct 2622 GATACCTGT-GGGAGCAAGATTTGTAGGTATCCCTGGAACAGAAAAC-GCAGAGAATCCA 2679
Query 2748 CGAGGAGTCATGGTGGAGGTGTATTGGCAACAAGACGAGTCAGGATC-ATTGTGCATCTC 2806
||||| | |||||||| ||||||||||||||||||| ||||||||| || |||||||||
Sbjct 2680 AGAGGAATAATGGTGGAAGTGTATTGGCAACAAGACGGGTCAGGATCGAT-GTGCATCTC 2738
Query 2807 AGGACACTC-CACAGAGATGC 2826
|||||||| | | |||||||
Sbjct 2739 TGGACACTCGC-CGGAGATGC 2758
> Ahg496336 jgi|Araly1|496336|fgenesh2_kg.8__2152__AT5G61690.1
Length=2775
Score = 1184 bits (641), Expect = 0.0
Identities = 1105/1326 (83%), Gaps = 44/1326 (3%)
Strand=Plus/Plus
Query 1514 AGTTCCACCTGTGGATCACATTACCCCAGATGACGAAGATGTCCTTGAAGAGGAAACTTT 1573
||||||||| ||||| || | ||| ||||||||| ||||||| |||||||| || ||
Sbjct 1380 AGTTCCACCCGTGGAGCATAATACGCCAGATGACAAAGATGTGCTTGAAGAAGAGACAGA 1439
Query 1574 AGTTAAACAACATTCAATGGAGGGTTTAGTTGATCCCAACGTTGCAGTTCAAATACGTGG 1633
|||||||||||| ||||||| || |||||||||| ||| |||||||||| |||| |||
Sbjct 1440 AGTTAAACAACAAGCAATGGATGGAATAGTTGATCCTAACATTGCAGTTCAGATACATGG 1499
Query 1634 TCTTGCAAAGACTTATCCTGGGACGACGAAGTTTGGATGCTGCAAATGCAAGAAAACTTC 1693
|||||||||||| ||||||||||| || ||| |||||||||||||||||| ||||||||
Sbjct 1500 TCTTGCAAAGACATATCCTGGGACTACAAAGCTTGGATGCTGCAAATGCACCAAAACTTC 1559
Query 1694 CCCTTTTCATGCTCTGAAGGGTTTGTGGATGAATATTGCCAAAGATCAATTATTCTGTCT 1753
|||||||||||| | |||||||||||||||||||||||||||||||| || || |||||
Sbjct 1560 GCCTTTTCATGCTGTAAAGGGTTTGTGGATGAATATTGCCAAAGATCAGTTGTTTTGTCT 1619
Query 1754 TCTTGGACCCAATGGTGCAGGG-AAAACAACTACTATCAATTGTTTGACAGGCTTATTTC 1812
||||||||| ||||| || ||| |||||||||||||| | ||||||||| ||| || ||
Sbjct 1620 TCTTGGACCTAATGGCGC-GGGAAAAACAACTACTATTAGTTGTTTGACTGGCATAAATC 1678
Query 1813 CAGTTACTGGTGGTGATGCACTAATTTATGGAAATTCTATAAGAAGCTCTGTTGGTATGT 1872
||||||||||||||||||| || || |||||| | || |||||||| || || |||||||
Sbjct 1679 CAGTTACTGGTGGTGATGCTCTTATATATGGAGACTCCATAAGAAGTTCCGTGGGTATGT 1738
Query 1873 CCAACATCCGTAAAATGATTGGAGTTTGTCCTCAGTTTGATATTCTTTGGGATGCTTTGT 1932
| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1739 CTAACATTCGTAAAATGATAGGAGTGTGTCCTCAGTTTGATATTCTTTGGGATGCTTTGT 1798
Query 1933 CTGGTGAAGAACACCTCAAACTCTTTGCTAGCATCAAAGGGTTGCCACCTTCATCAATCA 1992
|| |||||||||||||| | |||||||||||||||||||| |||||||| |||| ||||
Sbjct 1799 CTAGTGAAGAACACCTCCACCTCTTTGCTAGCATCAAAGGATTGCCACCAGCATCGATCA 1858
Query 1993 ACTCGA-TGGTTGAGAAGTCACTGGCGGAGGTAAAACTAACAGAAGCAGGGAAAATCAGG 2051
| |||| || | ||||||| ||||||||| |||||||| |||| ||| | |||| | ||
Sbjct 1859 AATCGACTGCT-GAGAAGTTACTGGCGGATGTAAAACTGACAGGAGCTGCGAAAGTTAGA 1917
Query 2052 GCAGGAAGTTACAGTGGAGGAATGAAACGGCGACTCAGTGTTGCAGTTTCTCTCATTGGT 2111
||||||||||| ||||| ||||||||||| |||||||||||||| || | || || |||
Sbjct 1918 GCAGGAAGTTATAGTGGTGGAATGAAACGTCGACTCAGTGTTGCGGTAGCACTTATCGGT 1977
Query 2112 GATCCAAAGCTGGTCTTCCTGGACGAACCTACTACAGGCATGGACCCGATCACGAGGAGA 2171
||||| |||||| || ||| | ||||||||||| ||||||||||||
Sbjct 1978 GATCCCAAGCTG----------AC-AAC-T------GGCATGGACCCTATCACGAGGAGA 2019
Query 2172 CATGTGTGGGATATCATACAGGAAACCAAGAAAGGTCGTGCCATTATACTAACAACACAT 2231
||||||||||| || ||||| || | ||||||||||||||||| |||||||| || |||
Sbjct 2020 CATGTGTGGGACATTATACAAGAGTCAAAGAAAGGTCGTGCCATCATACTAACGACGCAT 2079
Query 2232 TCGATGGAAGAAGCTGATATCTTAAGTGATCGGATAGGGATAATGGCTAAGGGTAGGCTC 2291
|| ||||||||||||||||| ||||||||||| |||||||| |||||||| || ||||||
Sbjct 2080 TCTATGGAAGAAGCTGATATTTTAAGTGATCGAATAGGGATCATGGCTAAAGGCAGGCTC 2139
Query 2292 CGCTGCATTGGAACCTCGATCAGGTTGAAATCCCGCTTTGGCACAGG-TTTCATTGCTAA 2350
||||||||||| ||||| |||||||| |||||||||||||| ||||| ||| |||||||
Sbjct 2140 CGCTGCATTGGGACCTCAATCAGGTTAAAATCCCGCTTTGGTACAGGATTTG-TTGCTAA 2198
Query 2351 CATTAGCTTTGTTGAAAGCAACAACCACAATGGCGAA-GCTGGTTCGGA--TTCACGCGA 2407
| ||||||| | |||||||| || ||||| | | | || || ||| ||| | |||
Sbjct 2199 CGTTAGCTTCATCGAAAGCAAAAATGACAATAAC-ATCGGTG-TT-GGAGCTTCGCACGA 2255
Query 2408 GCCAGTGAAGAAATTCTTTAAAGATCATCTCAAAGTCAAACCAATAGAAGAAAACAAGGC 2467
|||| ||||||||||||||||||| ||||| ||||| | |||| |||||||||||| ||
Sbjct 2256 GCCATTGAAGAAATTCTTTAAAGAGCATCTGAAAGTTGAGCCAACAGAAGAAAACAAAGC 2315
Query 2468 CTTCATGACTTTTGTTATACCTCACGACAAAGAGAATCTTTTGACAAGCTTTTTCGCTGA 2527
||||||||||||||||| || ||||||||||| || |||||||| | ||||| | ||
Sbjct 2316 TTTCATGACTTTTGTTATCCCACACGACAAAGAAAACCTTTTGACGGGGTTTTTTGAGGA 2375
Query 2528 GCTTCAAGACAGAGAAGAAGAATTTGGAATCTCAGATATCCAACTTGGTCTTGCTACTCT 2587
||| ||| |||||||| |||||||||||||| || |||||||| |||||||| |||||
Sbjct 2376 GCTACAAAACAGAGAATCTGAATTTGGAATCTCGGACATCCAACTCGGTCTTGCGACTCT 2435
Query 2588 TGAAGAAGTCTTTTTGAACATAGCAAGAAAAGCTGAACTCGAAAGCGCTGCGGTTGATGG 2647
||||||||| ||| | ||||| |||||| | |||||||| |||||||| | | || ||
Sbjct 2436 TGAAGAAGTGTTTCTCAACATCGCAAGACAGGCTGAACTAGAAAGCGCAACAGCCGAAGG 2495
Query 2648 AA-CAATGGTCACTCTCGACTTAACATCTGGT-TCTTCAGTCGAGATACCGGTAGGG-GC 2704
|| || |||||||||| || |||| ||| || ||| || | |||||||| || ||| ||
Sbjct 2496 AAACA-TGGTCACTCTGGAGTTAAAATCAGGCATCT-CACTAGAGATACCTGT-GGGAGC 2552
Query 2705 AAGATTTATCGGGATACCGGGA-ACAGAAA-CTGCAGAGAATCCACGAGGAGTCATGGTG 2762
||||||| | ||||| || | | ||||||| | |||||||||||| | || || ||||||
Sbjct 2553 AAGATTTGTTGGGATCCCTG-ATACAGAAAAC-GCAGAGAATCCAAGTGGGGTAATGGTG 2610
Query 2763 GAGGTGTATTGGCAACAAGACGAGTCAGGATC-ATTGTGCATCTCAGGACACTCCA-CAG 2820
|| ||||| ||||||||||||| ||| ||||| || |||||||||||||||||| | |||
Sbjct 2611 GAAGTGTACTGGCAACAAGACGGGTCGGGATCGAT-GTGCATCTCAGGACACTC-ATCAG 2668
Query 2821 AGATGC 2826
||||||
Sbjct 2669 AGATGC 2674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124638551575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5