BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47800.1 Length=1444 Score E Sequences producing significant alignments: (Bits) Value Ahg937524 jgi|Araly1|937524|scaffold_501715.1 1796 0.0 > Ahg937524 jgi|Araly1|937524|scaffold_501715.1 Length=1118 Score = 1796 bits (972), Expect = 0.0 Identities = 1058/1100 (96%), Gaps = 4/1100 (0%) Strand=Plus/Plus Query 157 AAAAAATGGTGAAGAAGCAATCGCCATTACACGTTGTCGGTGTGTCTGTTTTGATGGTGT 216 ||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||| Sbjct 17 AAAAAATGGTGAAGAAGCAATCGTCATTACACGTTCTTGGTGTGTCTGTTTTGCTGGTGT 76 Query 217 TGTTATGCAGTGTTAATTACAGTCTCTGTGAAAAGATCAAAACGTATAAGCTCACAAGAG 276 ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 77 TGTTATGTTGTGTTAATTACAGTCTCTGTGAAAAGATCAAAACCTATAAGCTCACAAGAG 136 Query 277 GAAGCTTAAGTGTTACTTTCACTAACTATGGTGCTGTCATGACCTCTCTTCTCCTCCCTG 336 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 GAAGCTTAAGTGTTACCTTCACTAACTATGGTGCTGTCATGACCTCTCTTCTCCTCCCTG 196 Query 337 ACAGACATGGAAAACAAGACGATGTTGTTCTTGGATTTGATACTGTTGATGGTTACAAGA 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 197 ACAGACATGGAAAACAAGACGATGTTGTTCTTGGATTTGATACTGTTGATGGTTACAAGA 256 Query 397 ATGATACAACATATTTTGGAGCAATTGTGGGAAGAGTGGCTAATAGAATAGGAGGTGCTA 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 257 ATGATACAACATATTTTGGAGCAATTGTGGGAAGAGTGGCTAATAGAATAGGAGGTGCTA 316 Query 457 AATTCAAGTTAAATGGTCATCTCTACAAAACCGATCCCAACGAAGGCCGTAACACTCTCC 516 |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 317 AATTCAAGTTGAATGGTCAACTCTACAAAACCGATCCCAACGAAGGCCATAACACTCTCC 376 Query 517 ATGGTGGTTCAAAGGGATTTAGTGATGTGATTTGGTCAGTCCAAAAGTATGTTCCCACTA 576 |||||||| |||| |||||||||||||||||||||||||||||||| || |||||||||| Sbjct 377 ATGGTGGTACAAAAGGATTTAGTGATGTGATTTGGTCAGTCCAAAACTACGTTCCCACTA 436 Query 577 GTCACATTACTTTCACATACGATAGCTTCGACGGTGAAGAAGGTTTTCCGGGCAATGTGA 636 |||||||||||||||||||| |||||||||| |||||||||||||||||||| || |||| Sbjct 437 GTCACATTACTTTCACATACAATAGCTTCGATGGTGAAGAAGGTTTTCCGGGGAACGTGA 496 Query 637 CGGTGAAAGTGACGTACATGTTGATCGGAGAAAACAAACTCGGTGTAAAAATGGAAGCAA 696 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 497 CGGTGAAAGTGACGTACATGTTGATCGGAGAAAACAAACTCGGCGTAAAAATGGAAGCAA 556 Query 697 AGCCACTCAACAAACCTACACCAATCAACTTAGCTCTCCACACTTACTGGAACCTCCACA 756 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 557 AGCCACTCAACAAACCAACACCAATCAACTTAGCTCTCCACACTTACTGGAACCTCCACA 616 Query 757 GCCACAACTCCGG-GAACATCCTCTCCCACAAAATTCAACTCCTCGCCGGAAAAATCACT 815 ||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| Sbjct 617 GCCACAACTCCGGCGA-CATCCTCTCCCACAAAATCCAACTCCTCGCCGGAAAAATCACT 675 Query 816 CCCGTCGACGACAAACTCATTCCCACCGGAGAAATCACCTCCATTACCGGAACTCCTTAC 875 || |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct 676 CCAGTCGACGACAAACTCATTCCCACCGGCGAAATCACCCCCATAACCGGAACTCCTTAC 735 Query 876 GATTTCCTCGAGCCACGTGAGATCGGTAGCCGGATCCACGAATTACCCGGCGGTTACGAC 935 ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 736 GATTTCCTCGAGCCACGCGAGATCGGAAGCCGAATCCACGAATTACCCGGCGGTTACGAC 795 Query 936 ATCAATTACGTGATCGACGGACCGATCGGGAAACATCTGAGGAAAACTGCGGTTGTGACG 995 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 796 ATCAATTACGTCATCGACGGACCGATCGGGAAACATCTGAGGAAAACTGCGGTTGTGACG 855 Query 996 GAGCAAGTCACCGGGAGGAAGATGGAGCTGTGGACGAATCAGCCTGGTGTTCAGTTTTAC 1055 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 856 GAGGAAGTCACCGGGAGGAAGATGGAGCTGTGGACGAATCAGCCTGGTGTTCAGTTTTAC 915 Query 1056 ACGAGTAATATGATGAAACGTGTCGTCGGTAAAGGTAAAGCCGTTTATGAGAAATACGGT 1115 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 916 ACGAGTAATATGATGACACGTGTCGTCGGAAAAGGTAAAGCCGTTTATGAGAAATACGGT 975 Query 1116 GGCTTGTGTTTGGAGACTCAAGGCTTCCCAGATTCCGTCAATCACAAGAACTTTCC-GTC 1174 ||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||| Sbjct 976 GGCTTGTGTCTGGAGACGCAAGGCTTCCCAGATTCCGTCAATCACAAGAA-TTTCCCGTC 1034 Query 1175 GCAGATTGTTAATCCCGGCGAGAGTTATTTGCATGTTATGCTCTTCAGATTCACTGCTCA 1234 ||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1035 GCAGATTGTGAATCCAGGCGAGAGTTATTTGCATGTTATGGTCTTCAGATTCACTGCTCA 1094 Query 1235 CTAAtcgggtcgggtcgggt 1254 |||||||||||||||||||| Sbjct 1095 CTAATCGGGTCGGGTCGGGT 1114 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54011967410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5