BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47960.1 Length=2157 Score E Sequences producing significant alignments: (Bits) Value Ahg323400 jgi|Araly1|323400|fgenesh1_pm.C_scaffold_5000944 2981 0.0 Ahg496450 jgi|Araly1|496450|fgenesh2_kg.8__2266__AT5G62680.1 1146 0.0 Ahg887958 jgi|Araly1|887958|Al_scaffold_0303_1 532 3e-150 > Ahg323400 jgi|Araly1|323400|fgenesh1_pm.C_scaffold_5000944 Length=1935 Score = 2981 bits (1614), Expect = 0.0 Identities = 1839/1942 (95%), Gaps = 38/1942 (2%) Strand=Plus/Plus Query 63 ATGAAGAGCAGAGTCATTCTTAACCATAGAGACAGAAGAGATAAGAATCATAACAACAAC 122 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1 ATGAAGAGCAGAGTCATTCTTAACCATAGAGACAGAAGAGATAAGAA-C--AACAACAAC 57 Query 123 AACACCAATCATTACACACAGGTTGATACTATGGAGAGAAAGCCTCTTGAGGTTGAGCCA 182 | | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 58 -A-A-CAATAATTACACACAGATTGATACTATGGAGAGAAAGCCTCTTGAGGTTGAGCCA 114 Query 183 TCTACTACGAC---G---A-CTA--AC-AC--CGAT----GTGG-TC-GAT--TCT---T 219 || || ||| | | | ||| | | |||| |||| || ||| | | | Sbjct 115 TCAACGACGGCGGTGAACACCTACTCCGCCGTCGATGGCGGTGGTTCTGATGGTGTGACT 174 Query 220 TCG-A-G--GA--A-GAGCAGAGAAAAATCGTTTATAGAGGATGGAAAGTCATGCCTTTT 272 ||| | | || | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 TCGAAGGTCGACGACGAGCAGAGAAAAATCGTTTATAGAGGATGGAAAGTCATGCCTTTT 234 Query 273 ATCATTGGTAATGAGACATTTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTT 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 ATCATTGGTAATGAGACATTTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTT 294 Query 333 GTGTACCTAACTTCTGTATTCAACCTTAAGAGCTACACAGCTGCAACTATCATCAATGCC 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 GTGTACCTAACTTCTGTATTCAACCTTAAGAGCTACACAGCTGCAACTATCATCAATGCC 354 Query 393 TTTAGTGGTACAATCAATTTCGGGACTTTTATTGCTGCCTTTCTTTGCGACACTTACTTT 452 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 355 TTTAGTGGTACAATCAACTTCGGGACTTTTATTGCTGCTTTTCTTTGCGACACTTACTTT 414 Query 453 GGTCGCTACAAGACTCTCAGTGTCGCTGTCATCGCTTGTTTTCTGGGATCGTTTGTGATA 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 GGTCGCTACAAGACTCTCAGTGTCGCTGTCATCGCTTGTTTTCTGGGATCGTTTGTGATA 474 Query 513 CTACTTACTGCTGCAATTCCGTCGTTGCACCCCGTTGCTTGCGGAAACAAAATCTCGTGC 572 ||||| ||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 475 CTACTGACTGCTGCAGTTCCGTCATTGCACCCCGTTGCTTGCGGAAACAAAAGCTCGTGC 534 Query 573 GAAGGGCCAAGTGTGGGACAGATACTGTTTCTGCTCATGGGTTTAGGCTTTCTTGTGGTA 632 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 535 GAAGGGCCGAGTGTGGGACAGATACTGTTTCTGCTGATGGGTTTAGGGTTTCTTGTGGTA 594 Query 633 GGCGCTGGTGGTATCAGACCGTGTAATTTAGCGTTTGGTGCTGATCAGTTCAACCCCAAA 692 || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 595 GGTGCGGGTGGTATCAGACCATGTAATTTAGCGTTTGGTGCTGATCAGTTCAACCCCAAA 654 Query 693 TCCGAATCAGGAAAGAAAGGGATCAACAGTTTCTTCAACTGGTATTTCTTCACTTTCACG 752 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 655 ACCGAATCTGGAAAGAAAGGGATCAACAGTTTCTTCAACTGGTATTTCTTCACTTTTACG 714 Query 753 TTCGCGCAGATCATCTCGCTCACAGCAGTTGTGTATATCCAGTCAAATGTGAGTTGGACA 812 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 715 TTCGCGCAGATCATCTCGCTCACGGCAGTTGTGTATATCCAGTCAAATGTGAGTTGGACG 774 Query 813 ATCGGTTTGATCATTCCGGTGGCTCTTATGTTCTTGGCGTGTGTGATTTTCTTTGCTGGC 872 ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| Sbjct 775 ATCGGTTTGATCATTCCAGTGTCTCTTATGTTCTTGGCGTGTGTGATCTTCTTTGCTGGC 834 Query 873 GATAGATTGTATGTAAAAGTGAAAGCCTCGGGTAGTCCATTGGCTGGTATTGCTCGTGTT 932 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 835 GATAAATTGTATGTAAAAGTGAAAGCCTCGGGTAGTCCATTGGCTGGTATCGCTCGTGTT 894 Query 933 ATAGCAGCCGCGATCAAGAAACGAGGTTTGAAGCCGGTTAAGCAGCCTTGGGTCAATCTT 992 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 895 ATAGCAGCCGCAATCAAGAAACGAGGATTGAAGCCGGTTAAGCAGCCTTGGGTCAATCTT 954 Query 993 TACAACCATATCCCGTCTAACTATGCAAATACTACTCTAAAATACACCGACCAGTTCAGA 1052 |||||||| || ||| |||||||||| |||||||||||||||||||| |||||||||||| Sbjct 955 TACAACCACATTCCGCCTAACTATGCTAATACTACTCTAAAATACACTGACCAGTTCAGA 1014 Query 1053 TTTCTAGACAAAGCAGCAATTATGACCCCCGAGGAGAAGTTGAACTCCGATGGAACGGCT 1112 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 1015 TTTCTAGACAAAGCAGCAATTATGACCCCCGAGGAGAAGTTGAACTCTGATGGAGCGGCT 1074 Query 1113 TCCGATCCATGGAAACTATGCACGTTGCAGCAAGTGGAAGAAGTGAAATGCATTGTAAGA 1172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1075 TCCGATCCATGGAAACTATGCACGTTGCAGCAAGTGGAAGAAGTGAAATGCATTGTTAGA 1134 Query 1173 GTGATTCCAATCTGGTTTGCATCCACGATATACTACCTTGCAATAACTATACAAATGACT 1232 |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| Sbjct 1135 GTGATTCCAATCTGGTTTGCTTCCACGATTTACTACCTTGCAATAACGATACAAATGACT 1194 Query 1233 TATCCGGTCTTCCAAGCGCTCCAGAGCGACCGACGATTAGGTTCTGGTGGCTTCAGGATT 1292 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1195 TATCCGGTCTTCCAAGCGATCCAGAGCGACCGACGATTAGGTTCTGGTGGCTTCAGGATT 1254 Query 1293 CCTGCGGCCACCTATGTAGTGTTCTTGATGACTGGCATGACAGTTTTCATCATATTCTAC 1352 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 CCTGCGGCCACCTATGTAGTGTTCTTGATGACTGGCATGACAGTTTTCATCATATTCTAT 1314 Query 1353 GACCGTGTACTTGTCCCGTCGCTCAGAAGAGTGACCGGGTTAGAAACCGGTATATCACTC 1412 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1315 GACCGTGTACTTGTCCCGTCGCTCAGAAGAGTGACCGGGATAGAAACCGGTATATCACTC 1374 Query 1413 TTACAAAGAATCGGAGCTGGGTTTACATTTGCGATAATGAGTTTATTAGTTTCCGGGTTT 1472 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 1375 TTACAAAGAATCGGAGCAGGGTTTACATTTGCGATACTGAGTTTATTAGTTTCCGGGTTT 1434 Query 1473 ATAGAGGAAAGGAGAAGAAACTTTGCATTGACCAAACCGACACTCGGGATGGCGCCTCGG 1532 ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 1435 ATAGAGGAAAGGAGAAGAACCTTTGCACTGACCAAACCGACACTCGGGATGGCGCCTCGG 1494 Query 1533 ACAGGAGAAATCTCATCAATGTCAGCGTTGTGGCTGATTCCGCAGCTTACACTTGCAGGC 1592 |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1495 ACAGGAGAAATCTCCTCAATGTCAGCGTTATGGCTGATTCCGCAGCTCACACTTGCAGGC 1554 Query 1593 ATAGCAGAAGCTTTTGCTGCCATTGGACAAATGGAGTTTTACTACAAGCAGTTTCCTGAA 1652 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1555 GTAGCCGAAGCTTTTGCTGCCATTGGACAAATGGAGTTTTACTACAAGCAGTTTCCTGAA 1614 Query 1653 AACATGAAGAGCTTCGCGGGTTCTATCTTTTATGTCGGTGCAGGGGTTTCGAGCTACCTC 1712 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1615 AACATGAAGAGCTTCGCAGGTTCTATCTTTTATGTCGGTGCAGGGGTTTCGAGCTACCTC 1674 Query 1713 GCTAGCTTCTTGATATCAACTGTTCATCGAACAACCGCGCATTCACCTTCAGGGAATTGG 1772 |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1675 GCTAGCTTCTTGATCTCAACTGTTCATCGATCAACTGCGCATTCACCTTCAGGGAATTGG 1734 Query 1773 TTAGCTGAGGATCTGAACAAAGCGAAATTGGATTACTTCTACTTCATGCTCACAGGACTC 1832 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1735 TTAGCTGAGGATCTGAACGAAGCGAAATTGGATTACTTCTACTTCATGCTCACAGGACTC 1794 Query 1833 ATGGTTGTTAACATGGCTTACTTCTTGTTGATGGCTAGATGGTATAGATACAAAGGAGGT 1892 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| Sbjct 1795 ATGGTTGTTAACATGGCTTACTTCTTGTTGATGGCGAAATGGTATAGATACAAAGGCGGT 1854 Query 1893 AATGATGAAGA-CATCACTGAGATTGAGACCAATGAAGAAGAAACCAAGCAACAGCAGCT 1951 ||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1855 AATGATGAA-ATCATCACTGAGATTGAGACCAACGAAGAAGAGACCAAGCAACAGCAGCT 1913 Query 1952 ACAAGACAAGAACTCTGTCTGA 1973 |||||||||||||||||||||| Sbjct 1914 ACAAGACAAGAACTCTGTCTGA 1935 > Ahg496450 jgi|Araly1|496450|fgenesh2_kg.8__2266__AT5G62680.1 Length=2242 Score = 1146 bits (620), Expect = 0.0 Identities = 1365/1716 (80%), Gaps = 86/1716 (5%) Strand=Plus/Plus Query 234 AGAA-AAA-TCGTTTATAGAGGATGGAAAGTCATGCCTTTTATCATTGGTAATGAGACAT 291 |||| ||| ||||||||||||| |||||||||||||| ||||| ||||| ||||| |||| Sbjct 229 AGAAGAAAGTCGTTTATAGAGGCTGGAAAGTCATGCCCTTTATTATTGGAAATGAAACAT 288 Query 292 TTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTTGTGTACCTAACTTCTGTAT 351 ||||||||||||||||||| |||||| |||| |||||||| || || ||||| | || | Sbjct 289 TTGAGAAGCTTGGGATCATTGGGACACTATCGAACCTTCTGGTTTATTTAACTGCAGTCT 348 Query 352 TCAACCTTAAGAGCTA-CACAGCTGCAACTATCATCAATGCCTTTAGTGGTACAATCAAT 410 ||||||| ||||| || ||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct 349 TCAACCTGAAGAG-TATTACAGCTGCAACCATCATTAATGCCTTTAGTGGCACAATTAAT 407 Query 411 TTCGGGACTTTTATTGCTGCCTTT-CTTTGCGACACTTACTTTGGTCGCTACAAGACTCT 469 ||||| ||||| | |||| |||| || || ||||||||||| ||||| ||||||||||| Sbjct 408 TTCGGAACTTTCGTAGCTG-CTTTCCTCTGTGACACTTACTTCGGTCGATACAAGACTCT 466 Query 470 CAGTGTCGCTGTCATCGCTTGTTTTCTGGGATCGTTTGTGATACTACTT-ACTGCTGCAA 528 ||||| || |||||||| |||||||| |||||||||||||||||| || ||||||||| Sbjct 467 AAGTGTTGCGGTCATCGCCTGTTTTCTTGGATCGTTTGTGATACTA-TTGACTGCTGCAG 525 Query 529 TTCCGTC-GTTGCACCCCGTTGCTTGCGGAAACAAAATC---TCG--TGCG-AA-GGGCC 580 | || | |||| || | | | || || |||| | | | || | || ||||| Sbjct 526 TGCC-ACAACTGCATCCAGCTCCATGTGG-AACAGCGGCGGATAGTATGTGTAACGGGCC 583 Query 581 AAGTGTG-GGACAGATA-CTGTTTCTGCTCATGGGTTTAGGCTTTCTTGTGGTAGGCGCT 638 ||||| | || |||||| | |||||| || |||||| | || || ||||| || || || Sbjct 584 AAGTG-GAGGCCAGATAGC-GTTTCTACTGATGGGTCTCGGGTTCCTTGTAGTGGGAGCG 641 Query 639 GGTGGTATCAGACCGTGTAATTTAGCGTTTGGTGCTGATCAGTTCAACCCCAAATCCGAA 698 || || || ||||||||||||||||| ||||| ||||||||||| ||||| ||| |||| Sbjct 642 GGAGGGATTAGACCGTGTAATTTAGCTTTTGGGGCTGATCAGTTTAACCCAAAAAGCGAA 701 Query 699 TCA-GGAAAGAAAGGGATCAACAGTTTCTTCAACTGGTATTTCTTCACTTTCACGTTCGC 757 ||| ||||| | |||||| |||||||||| || ||||||||||| || ||||| ||||| Sbjct 702 TCAGGGAAA-AGAGGGATTGACAGTTTCTTTAATTGGTATTTCTTTACCTTCACTTTCGC 760 Query 758 GCAGATCATCTCGCTCACAGC-AGTTGTGTATATCCAGTCAAATGTGAGTTGGACAATCG 816 ||||||| | ||||| || | ||| ||||| | ||||| ||||| |||||||| || | Sbjct 761 GCAGATCTTGTCGCTGAC-TCTAGTCGTGTACGTTCAGTCTAATGTCAGTTGGACGATTG 819 Query 817 GTTTGATCATTCCGGTGGCTCTTATGTTCTTGGCGTG-TGTGATTTTCTTTGCTGGCGAT 875 || | | ||| |||| | ||||||||||||||| || | ||||||||||||| |||||| Sbjct 820 GTCTAACCATCCCGGCCGTTCTTATGTTCTTGGCCTGCT-TGATTTTCTTTGCGGGCGAT 878 Query 876 -AGATTGTATGT-AAAAGTGAAAGCCTCGGGTAGTCCATTGGCTGGTATTGCTCGTGTTA 933 || |||||||| |||| | ||||||||||||||||||||||| ||||| |||| |||| Sbjct 879 AAG-TTGTATGTGAAAA-TCAAAGCCTCGGGTAGTCCATTGGCCGGTATAGCTCAAGTTA 936 Query 934 TAGCAGCCGCGATCAAGAAACGAGGTTTGAAGCCGGTTAAGCAGCCTTGGGTCAATCTTT 993 |||| | |||||||||||||| || || ||||| | || ||||||||| | || |||| Sbjct 937 TAGCGGTTGCGATCAAGAAACGCGGATTAAAGCCCGCGAAACAGCCTTGGCTTAACCTTT 996 Query 994 ACAACCA-TATCCCGTCTAACTATGCAAA-TACTACTCTAAAATACACCGACCAGTTCAG 1051 |||| | || ||| | || || ||||| | | | || |||||||| ||||| ||||| Sbjct 997 ACAATTACTA-CCCACCAAAATACGCAAACT-CCAAGCTCAAATACACTGACCAATTCAG 1054 Query 1052 ATTTCTAGACAAAGCAGCAATTATGACCCCCGAGGAGAAGTTG-AACTCCGATGG-AACG 1109 |||||| || ||||| || || ||||| ||||| || ||| || | | | ||||| || | Sbjct 1055 ATTTCTCGATAAAGCCGCGATCATGACTCCCGAAGATAAGCTGCAGC-CAGATGGTAA-G 1112 Query 1110 GCTTCCGATCCATGGAAACTATGCACGTTGCAGCAAGTGGAAGAAGTGAAATGCATTGTA 1169 || | ||||| ||||| || || || |||| ||||| ||||||||||| ||||| || Sbjct 1113 CCTGCTGATCCGTGGAAGCTCTGTACAATGCAACAAGTTGAAGAAGTGAAGTGCATCGTG 1172 Query 1170 AGAGTGATTCCAATCTGGTTTGCATCCA-CGATATACTACCTT-GCAATAACT-ATACAA 1226 ||||| |||| || |||||||||| || | || ||||| ||| | || ||| | |||| Sbjct 1173 AGAGTTCTTCCTATATGGTTTGCAT-CATCAATTTACTA-CTTAACCATTACTCA-ACAA 1229 Query 1227 ATGACTTATCCGGTCTTCCAAGCGCTCCAGAGCGACCGACGATTAGGTTCTGGTGGCTTC 1286 ||||||||||| ||||||||||| |||||||||||||| || ||||| || || || || Sbjct 1230 ATGACTTATCCCGTCTTCCAAGCCCTCCAGAGCGACCGTCGCTTAGGCTCAGGAGGATT- 1288 Query 1287 AG-GATTCCTGCGGCCACCTATGTAGTGTTCTTGATGACTGGCATGACAGTTTTCATCAT 1345 | ||||||||| |||||||| || || ||||||||||| || ||||||||||||||| | Sbjct 1289 TGTGATTCCTGCAGCCACCTACGTGGTTTTCTTGATGACGGGAATGACAGTTTTCATCGT 1348 Query 1346 ATTCTACGACCGTGTACTTGTCCCGTCGC-TCAGAAGAGTGACCGGGT-TAGAAACCGGT 1403 | | ||||||||||||||||| || | | | |||||| | | | ||| |||| ||||| Sbjct 1349 AGTATACGACCGTGTACTTGTGCCAAC-CATGAGAAGAATTA-CTGGTCTAGACACCGGG 1406 Query 1404 ATATCACTCTTACAAAGAATCGGAGCTGG-GTTTACATTTGCGATAATG--AGTTTATTA 1460 ||| | ||||| || ||||||||| |||| ||| | || || || | || || || Sbjct 1407 ATAACGCTCTTGCAGAGAATCGGAACTGGCATTTTC--TT-CGCTACCGCAAGCCTAGTA 1463 Query 1461 GTTTC-CGGG-TTTATAGAGGAAAGGAGAAGAAAC-TTTGCAT-TGACCAAACCGACACT 1516 | || |||| ||| | ||||||||||| || ||| || || | |||| ||||||||||| Sbjct 1464 G--TCGCGGGATTTGTCGAGGAAAGGAGGAG-AACATTCGC-TCTGACTAAACCGACACT 1519 Query 1517 CGGGATGGCGCCTCGGACA-GGAGAAATCTCATCAATGTCAGCGT-TGTGGCTGATTCCG 1574 ||| |||||||| | || | ||||||||||| ||||||||||| | |||||||||||||| Sbjct 1520 CGGTATGGCGCCAC-GAAAGGGAGAAATCTCCTCAATGTCAGC-TATGTGGCTGATTCCG 1577 Query 1575 CAGCT-TACACTTGCAGGCATAGCAGAAGCTTTTGCTGCCATTGGACAAATGGAGTTTTA 1633 ||||| | |||| || || |||| || || ||||| || |||||||||||||||||||| Sbjct 1578 CAGCTCT-CACTGGCGGGTGTAGCCGAGGCATTTGCAGCGATTGGACAAATGGAGTTTTA 1636 Query 1634 CTACAAGCAGTTTCCTGAAAACATGAAGAGCTTCGCGGGTTCTATCTTTTATGTCGGTGC 1693 ||||||||||||||| |||||||||| ||| |||||||| || |||||||| || || | Sbjct 1637 CTACAAGCAGTTTCCCGAAAACATGAGGAGTTTCGCGGGATCCATCTTTTACGTAGGAGG 1696 Query 1694 AGGGGTTTCGAGCTACCTCGCTAGCTTCTTGATAT-CAACTGTTCATC-GAACAACCGC- 1750 ||| |||||||| ||||||| |||||||||||| | |||| ||||| | | | || || Sbjct 1697 AGGAGTTTCGAGTTACCTCGGTAGCTTCTTGAT-TGCAACAGTTCA-CAGGATGAC-GCA 1753 Query 1751 GCATTCACCTTCAGGG--AATTGGTTAGCTGAGGATCTGAACAAAGCGAA-ATTGGAT-T 1806 | | || | | ||| || ||||||||||||||| ||||||||| ||| ||||||| | Sbjct 1754 GAACTCGTC--CGGGGGTAACTGGTTAGCTGAGGATTTGAACAAAG-GAAGATTGGATCT 1810 Query 1807 ACTTCTACTTCATGCTCACAGGACTCATGGTTGTTAACATGGCTTACTTCTTGTTGATGG 1866 |||||| |||||| || | ||| || ||| ||||| | ||||| |||||| ||||| Sbjct 1811 -CTTCTATTTCATGATCGCTGGAATCTTGGCAGTTAATTTTGCTTATTTCTTGGTGATGT 1869 Query 1867 CTAGATGGTATAGATACAAAGGAGGTAATGATGAAG 1902 | |||||||| || ||||||||| || ||||||||| Sbjct 1870 CAAGATGGTACAGGTACAAAGGAAGTGATGATGAAG 1905 > Ahg887958 jgi|Araly1|887958|Al_scaffold_0303_1 Length=441 Score = 532 bits (288), Expect = 3e-150 Identities = 400/447 (89%), Gaps = 36/447 (8%) Strand=Plus/Plus Query 63 ATGAAGAGCAGAGTCATTCTTAACCATAGAGACAGAAGAGATAAGAATCATAACAACAAC 122 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1 ATGAAGAGCAGAGTCATTCTTAACCATAGAGACAGAAGAGATAAGAA-C--AACAACAAC 57 Query 123 AACACCAATCATTACACACAGGTTGATACTATGGAGAGAAAGCCTCTTGAGGTTGAGCCA 182 | | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 58 -A-A-CAATAATTACACACAGATTGATACTATGGAGAGAAAGCCTCTTGAGGTTGAGCCA 114 Query 183 TCTACTACGAC---G---A-CTA--AC-AC--CGAT----GTGG-TC-GAT--TCT---T 219 || || ||| | | | ||| | | |||| |||| || ||| | | | Sbjct 115 TCAACGACGGCGGTGAACACCTACTCCGCCGTCGATGGCGGTGGTTCTGATGGTGTGACT 174 Query 220 TCG-A-G--GA--A-GAGCAGAGAAAAATCGTTTATAGAGGATGGAAAGTCATGCCTTTT 272 ||| | | || | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 TCGAAGGTCGACGACGAGCAGAGAAAAATCGTTTATAGAGGATGGAAAGTCATGCCTTTT 234 Query 273 ATCATTGGTAATGAGACATTTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTT 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 ATCATTGGTAATGAGACATTTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTT 294 Query 333 GTGTACCTAACTTCTGTATTCAACCTTAAGAGCTACACAGCTGCAACTATCATCAATGCC 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 GTGTACCTAACTTCTGTATTCAACCTTAAGAGCTACACAGCTGCAACTATCATCAATGCC 354 Query 393 TTTAGTGGTACAATCAATTTCGGGACTTTTATTGCTGCCTTTCTTTGCGACACTTACTTT 452 ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct 355 TTTAGTGGTACAATCAACTTCGGGACTTTTATTGCTGCTTTTCTTTGCGACACATACTTT 414 Query 453 GGTCGCTACAAGACTCTCAGTGTCGCT 479 ||||||||||||||||||||||||||| Sbjct 415 GGTCGCTACAAGACTCTCAGTGTCGCT 441 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81170312095 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5