BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48000.1 Length=2009 Score E Sequences producing significant alignments: (Bits) Value Ahg485161 jgi|Araly1|485161|fgenesh2_kg.5__1153__AT3G48000.1 2889 0.0 Ahg914415 jgi|Araly1|914415|Al_scaffold_0001_4669 922 0.0 Ahg930165 jgi|Araly1|930165|scaffold_302622.1 577 1e-163 Ahg354766 jgi|Araly1|354766|fgenesh1_pg.C_scaffold_7001939 462 4e-129 > Ahg485161 jgi|Araly1|485161|fgenesh2_kg.5__1153__AT3G48000.1 Length=1903 Score = 2889 bits (1564), Expect = 0.0 Identities = 1801/1911 (94%), Gaps = 34/1911 (2%) Strand=Plus/Plus Query 1 AGTTAAGCGACATGTGTTAGAGATATCCGGAGATCTCAACCGTTGGATTCTTTCTCCTTC 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 AGTTAAGCGACATGTGTTAGAGATCTCCGGAGATCTCAACCGTTGGATTCTTTCTCCTTC 60 Query 61 AAATCAAATTATAAATCCCATCAAACagagagagagagagaagaggaggagaATTCGAAG 120 ||||| ||||||| ||||||| ||||||||||||| |||||||||||||||| ||||| Sbjct 61 CAATCATATTATAAGTCCCATC--ACAGAGAGAGAGA-AGAAGAGGAGGAGAATCCGAAG 117 Query 121 AATAAAAGATAAGAACTTTGACGTTTTGAAGCTTAAAGCTTGAAACTTGTTTCATCCATG 180 |||||||||||||||||||| || || |||| ||| |||||||| Sbjct 118 ---AAAAGATAAGAACTTTGACG--TT-----TT----CTTG----TTG---CATCCATG 156 Query 181 GCGGCTCGTAGAGTGTCTTCTCTTTTATCTCGATCTTTTTCAGCTTCCTCTCCCTTACTG 240 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 157 GCGGCTCGTAGAGTGTCTTCTCTTTTATCTCGATCTTTATCAGCTTCCTCTCCCTTACTG 216 Query 241 TTTCGTTCTCAAGGGAGAAATTGTTACAATGGAGGGATCTTAAGGAGATTTGGAACCTCT 300 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 217 TTTCGTTCTCAAGGGAGAAATTGTTACAGTGGAGGGATCTTAAGGAGATTTGGAACCTC- 275 Query 301 TCTGCTGCTGCTGAGGAAATCATAAACCCATCTGTTCAAGTTTCTCACACACAGCTCCTC 360 | | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 276 T-T-CTGCTGCTGAGGAAATCATTAACCCTTCTGTTCAAGTTTCTCACACACAGCTCCTC 333 Query 361 ATCAATGGGAACTTTGTTGACTCTGCTTCTGGTAAGACGTTTCCGACTCTTGATCCGAGG 420 || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 334 ATAAATGGGAACTTCGTTGACTCTGCTTCTGGTAAGACGTTTCCGACTCTTGATCCGCGG 393 Query 421 ACAGGCGAAGTCATTGCTCATGTAGCTGAAGGCGATGCTGAAGATATCAATCGAGCTGTG 480 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 394 ACAGGCGAAGTCATTGCGCATGTAGCTGAAGGCGATGCTGAAGATATCAATCGAGCGGTG 453 Query 481 AAAGCTGCAAGGACGGCCTTTGATGAAGGACCTTGGCCTAAAATGAGTGCTTATGAAAGG 540 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 454 AAAGCTGCAAGGAAGGCCTTTGATGAAGGACCTTGGCCTAAAATGAGTGCTTATGAAAGG 513 Query 541 TCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTCGCGTCT 600 |||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 514 TCAAGAGTAATGCTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAGGAGCTCGCGTCT 573 Query 601 CTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATTCCCATG 660 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| Sbjct 574 CTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATTCCAATG 633 Query 661 TTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAACAATT 720 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 634 TTTGCAAGATTGTTCCGTTACTATGCCGGATGGGCGGATAAGATTCATGGACTAACAGTT 693 Query 721 CCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCTGGACAG 780 |||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct 694 CCAGCTGATGGAAACTATCATGTTCAAACATTGCATGAACCGATAGGTGTTGCTGGACAG 753 Query 781 ATCATACCGTGGAATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTCTTGCT 840 ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 754 ATCATTCCATGGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTCTTGCT 813 Query 841 TGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTTCTATGCT 900 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 814 TGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTTCTATGCC 873 Query 901 GGAAAGCTTTTCCTTGAAGCGGGTCTTCCTCCTGGTGTTCTGAATATTGTTTCGGGATTC 960 || |||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||| Sbjct 874 GGGAAGCTTTTGCTTGAGGCGGGTCTTCCTCCTGGTGTTCTGAATATAGTTTCTGGATTC 933 Query 961 GGTGCAACAGCAGGTGCTGCCCTCGCGAGTCATATGGATGTAGACAAGCTTGCTTTTACA 1020 |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 934 GGTGCAACTGCAGGTGCTGCCCTCGCTAGTCACATGGATGTAGACAAGCTTGCTTTTACA 993 Query 1021 GGATCGACTGATACGGGGAAAGTTATACTTGGATTGGCTGCTAACAGCAATCTTAAGCCC 1080 ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 994 GGATCAACTGATACGGGCAAAGTTATACTTGGTTTGGCTGCTAACAGCAATCTTAAGCCG 1053 Query 1081 GTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGATGCTGATATTGAT 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1054 GTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGATGCTGATATCGAT 1113 Query 1141 AAAGCTGTAGAGCTTGCACACTTTGCCCTCTTCTTCAACCAGGGGCAATGTTGCTGCGCG 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1114 AAAGCTGTAGAGCTTGCACACTTTGCCCTCTTCTTCAACCAGGGGCAATGTTGCTGTGCG 1173 Query 1201 GGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAAAGGCA 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1174 GGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAAAGGCA 1233 Query 1261 CGCGCATTGAAACGTGTTGTTGGTGATCCTTTCAGGAAAGGCATTGAACAGGGTCCTCAG 1320 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1234 CGCGCATTGAAACGTGTGGTTGGTGATCCTTTCAGGAAAGGCATTGAACAGGGTCCTCAG 1293 Query 1321 ATCGATTTGAAGCAATTTGAGAAAGTGATGAAGTACATAAAGTCAGGTATCGAAAGCAAT 1380 || |||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 1294 ATTGATTCGAAGCAGTTTGAGAAAGTGATGAAGTACATAAGGTCAGGTGTCGAAAGCAAT 1353 Query 1381 GCTACTCTTGAATGTGGTGGTGATCAGATTGGAGACAAAGGTTACTTCATCCAACCTACT 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1354 GCTACTCTTGAATGTGGTGGTGATCAGATTGGAGACAAAGGTTACTTCATCCAACCTACT 1413 Query 1441 GTCTTCTCTAATGTTAAGGATGACATGCTTATCGCTCAAGACGAGATTTTCGGTCCAGTC 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1414 GTCTTCTCTAATGTTAAGGATGACATGCTTATCGCTCAAGACGAGATTTTCGGTCCAGTC 1473 Query 1501 CAATCGATCTTGAAGTTCAGTGATGTGGATGAGGTGATAAAGAGGGCGAACGAGACGAAG 1560 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1474 CAATCAATCTTGAAATTCAGTGATGTGGATGAGGTGATAAAGAGGGCGAACGAGACGAGG 1533 Query 1561 TACGGGCTAGCGGCAGGGGTTTTCACGAAGAATCTGGACACGGCAAACAGGGTTTCAAGG 1620 ||||||||||| |||||||||||||| |||| | ||||||| |||||||||||||| ||| Sbjct 1534 TACGGGCTAGCCGCAGGGGTTTTCACAAAGAGTTTGGACACCGCAAACAGGGTTTCGAGG 1593 Query 1621 GCTTTGAAAGCTGGTACCGTATGGGTTAACTGCTTCGACGTATTTGATGCAGCCATACCA 1680 |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| || Sbjct 1594 GCTTTGAAAGCTGGCACCGTTTGGGTTAACTGCTTCGACGTCTTTGACGCAGCCATTCC- 1652 Query 1681 TTT-GGTGGTTACAAGATGAGTGGGAATGGGAGAGAGAAAGGCATATACAGTCTCAATAA 1739 ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1653 TTTCGGTGGTTACAAGATGAGCGGGAATGGGAGAGAGAAAGGCATATATAGTCTCAATAA 1712 Query 1740 TTACTTGCAGATCAAGGCAGTCGTCACTGCTCTAAATAAGCCTGCCTGGATCTGATCTCT 1799 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1713 TTACTTGCAGATCAAGGCAGTCGTCACTGCTCTTAATAAGCCTGCCTGGATCTGATCTCT 1772 Query 1800 GGAGTGTGGTTTCAGCATCATAAATGCTCAAACAAAAGAAATAGACTCTATAAA--GTTA 1857 ||||| |||||| | |||||||||||||||||||||||| ||||| |||||| ||| Sbjct 1773 GGAGTTTGGTTT-AT--TCATAAATGCTCAAACAAAAGAAAGAGACTTTATAAAAAGTTG 1829 Query 1858 CAATAGTAATAATTAAGGTCATGGTTTGTAATTTGAGTAACGGATTGTGAT 1908 ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1830 CAATAGTAATAATTAAGGTCATGGTTTGTAACTTGAGTAACGGATTGTGAT 1880 > Ahg914415 jgi|Araly1|914415|Al_scaffold_0001_4669 Length=702 Score = 922 bits (499), Expect = 0.0 Identities = 662/735 (90%), Gaps = 34/735 (5%) Strand=Plus/Plus Query 537 AAGGTCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTCGC 596 |||||||||||| |||| | ||||| ||||||||||||||||||||||||||| ||||| Sbjct 1 AAGGTCAAGAGTAATGTT-AAGTTTGTAGATTTGGTTGAGAAACACAGCGAAGAACTCGC 59 Query 597 GTCTCTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATTCC 656 |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 60 GTCTCTAGAGACTTGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATTCC 119 Query 657 CATGTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAAC 716 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 120 AATGTTTGCAAGATTGTTCCGTTACTATGCT---TGGGCGGATAAGATTCATGGACTAAC 176 Query 717 AATTCCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCTGG 776 | |||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| Sbjct 177 AGTTCCAGCTGATGGAAACTATCATGTTCAAACATTGCATGAACCCATAGGTGTAGCTGG 236 Query 777 ACAGATCATACCGT-GGAATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTC 835 ||||||||| || | |||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 237 ACAGATCATTCC-TGGGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTACTC 295 Query 836 TTGCTTGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTTCT 895 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 296 TTGCTTGTGGTAACACCACTGTCCTTAAAACCGCTGAGCAAACACCTCTCACGGCTTTCT 355 Query 896 ATGCTGGAAAGCTTTTCCTTGAAGCGGGTCTTCCTCCTGGTGTTCTGAATATTGTTTCGG 955 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||| | Sbjct 356 ATGCTGGCAAGCTTTTACTTGAAGCTGGTCTTCCTCCTGGTGTTCTGAATATAGTTTCTG 415 Query 956 GATTCGGTGCAACAGCAGGTGCTGCCCTCGCGAGTCATATGGATGTAGACAAGCTTGCTT 1015 ||||||||||||| | ||| | ||||||||||| | | || | || || Sbjct 416 GATTCGGTGCAACTGAAGG-GATGCCCTCGCGA--C-T-TG--------C----TT--TT 456 Query 1016 TTACAGGATCGACTGATACGGGGAAAGTTATACTTGGATTGGCTGCTAACAGCAATCTTA 1075 ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| Sbjct 457 --ACAGGATCGACTGATACAGTCAAAGTTATACTTGGATTGGCTGCCAACAGCAATCTTA 514 Query 1076 AGCCCGTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGATGCTGATA 1135 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 515 AGCCGGTAACTCTGGAACTTGGAGGGAAATCACCATTCATCGTATTCGAAGATGCTGATA 574 Query 1136 TTGATAAAGCTGTAGAGCTTGCACACTTTGCCCTCTTCTTCAACCAGGGGCAATGTTGCT 1195 ||||||| || ||| ||||||||||||||||||||||||||| | |||| ||||| Sbjct 575 TTGATAAGGCCGTA----TTGCACACTTTGCCCTCTTCTTCAACC-GA--CAATCTTGCT 627 Query 1196 GCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAA 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 628 GCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAA 687 Query 1256 AGGCACGCGCATTGA 1270 ||||||| ||||||| Sbjct 688 AGGCACGGGCATTGA 702 > Ahg930165 jgi|Araly1|930165|scaffold_302622.1 Length=1390 Score = 577 bits (312), Expect = 1e-163 Identities = 361/385 (94%), Gaps = 2/385 (1%) Strand=Plus/Plus Query 535 GAAAGGTCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTC 594 |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 723 GAAAGGTCAAGAGTAATGTTGAGGTTTGTAGATTTGGTTGAGAAACACAGCGAAGAACTC 782 Query 595 GCGTCTCTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATT 654 |||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 783 GCGTCTCTAGAGACTTGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATT 842 Query 655 CCCATGTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTA 714 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 843 CCAATGTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTA 902 Query 715 ACAATTCCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCT 774 ||| |||||| ||||||||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct 903 ACAGTTCCAGTTGATGGAAACTATCATGTTCAAACATTGCATGAACCCATAGGTGTAGCT 962 Query 775 GGACAGATCATACCGTGG-AATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGC 833 ||||||||||| || ||| |||||||| |||||||||||||||||||||||||||||| | Sbjct 963 GGACAGATCATTCC-TGGGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTAC 1021 Query 834 TCTTGCTTGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTT 893 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 1022 TCTTGCTTGTGGTAACACCACTGTCCTTAAAACCGCTGAGCAAACACCTCTCACGGCTTT 1081 Query 894 CTATGCTGGAAAGCTTTTCCTTGAA 918 ||||||||| |||||||| |||||| Sbjct 1082 CTATGCTGGCAAGCTTTTACTTGAA 1106 Score = 215 bits (116), Expect = 1e-54 Identities = 128/134 (96%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 1009 CTTGCTTTTACAGGATCGACTGATACGGGGAAAGTTATACTTGGATTGGCTGCTAACAGC 1068 |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| Sbjct 1107 CTTGCTTTTACAGGATCGACTGATACAGTCAAAGTTATACTTGGATTGGCTGCCAACAGC 1166 Query 1069 AATCTTAAGCCCGTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGAT 1128 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1167 AATCTTAAGCCGGTAACTCTGGAACTTGGAGGGAAATCACCATTCATCGTATTCGAAGAT 1226 Query 1129 GCTGATATTGATAA 1142 |||||||||||||| Sbjct 1227 GCTGATATTGATAA 1240 Score = 161 bits (87), Expect = 2e-38 Identities = 89/90 (99%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1186 CAATGTTGCTGCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTT 1245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 CAATGTTGCTGCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTT 1307 Query 1246 GAGAAATCAAAGGCACGCGCATTGAAACGT 1275 ||||||||||||||||| |||||||||||| Sbjct 1308 GAGAAATCAAAGGCACGGGCATTGAAACGT 1337 > Ahg354766 jgi|Araly1|354766|fgenesh1_pg.C_scaffold_7001939 Length=516 Score = 462 bits (250), Expect = 4e-129 Identities = 289/308 (94%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 540 GTCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTCGCGTC 599 ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 3 GTCAAGAGTAATGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGTGAAGAACTCGCGTC 62 Query 600 TCTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATTCCCAT 659 ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| || Sbjct 63 TCTAGAGACTTGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATTCCAAT 122 Query 660 GTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAACAAT 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 123 GTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAACAGT 182 Query 720 TCCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCTGGACA 779 ||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||| Sbjct 183 TCCAGCTGATGGAAACTATCATGTTCAAACATTGCATGAACCCATAGGTGTAGCTGGACA 242 Query 780 GATCATACCGT-GGAATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTCTTG 838 |||||| || | |||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 243 GATCATTCC-TAGGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTACTCTTG 301 Query 839 CTTGTGGT 846 |||||||| Sbjct 302 CTTGTGGT 309 Score = 163 bits (88), Expect = 4e-39 Identities = 105/113 (93%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 922 GGTCTTCCTCCTGGTGTTCTGAATATTGTTTCGGGATTCGGTGCAACAGCAGGTGCTGCC 981 |||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| |||||| Sbjct 311 GGTCTTCCTCCTGGTGTTTTGAATATAGTTTCTGGATTCGGTGCAACTGCAGG-GCTGCC 369 Query 982 CTCGCGAGTCATATGGATGTAGACAAGCTTGCTTTTACAGGATCGACTGATAC 1034 ||||| ||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 370 CTCGCTAGTCACATGGATGTAGACAAGCTTGCTTTTACAGGATCAACTGATAC 422 Score = 141 bits (76), Expect = 2e-32 Identities = 82/85 (96%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 1186 CAATGTTGCTGCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTT 1245 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 432 CAATGTTGCTGAGCGGGGTCTCGGACATTTGTTTATGAGAAAGTGTATGATGAGTTTGTT 491 Query 1246 GAGAAATCAAAGGCACGCGCATTGA 1270 ||||||||||||||||| ||||||| Sbjct 492 GAGAAATCAAAGGCACGGGCATTGA 516 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75532955835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5