BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48150.1 Length=1967 Score E Sequences producing significant alignments: (Bits) Value Ahg485175 jgi|Araly1|485175|fgenesh2_kg.5__1167__AT3G48150.1 3240 0.0 Ahg896116 jgi|Araly1|896116|Al_scaffold_0005_82 904 0.0 Ahg946853 jgi|Araly1|946853|scaffold_703082.1 846 0.0 Ahg941585 jgi|Araly1|941585|scaffold_602129.1 841 0.0 Ahg896117 jgi|Araly1|896117|Al_scaffold_0005_83 326 5e-88 > Ahg485175 jgi|Araly1|485175|fgenesh2_kg.5__1167__AT3G48150.1 Length=1928 Score = 3240 bits (1754), Expect = 0.0 Identities = 1872/1930 (97%), Gaps = 4/1930 (0%) Strand=Plus/Plus Query 4 TCTCTCCACGACGAAGAAGAGATTCTTCGATTCTTTTTTGAATAC-TTAAAGTTAAACTC 62 ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 1 TCTCTCCACGACGAAGAAGAGATTCTTCGATTCTTTTTTGAATACTTTTAAGTT-AACTC 59 Query 63 TCAGTTTCTGCTTCTGCTATGGTCTCTAAAGAGT-GTTGCCGAAACGAAATACGTGCGGC 121 |||||||||||||||||||||||||||||||| | |||| || |||||||| |||||||| Sbjct 60 TCAGTTTCTGCTTCTGCTATGGTCTCTAAAGA-TAGTTGTCGCAACGAAATCCGTGCGGC 118 Query 122 TATTCGACAGCTTAGCGACCGCTGTTTATACTCCGCCGCAAAGTGGGCAGGAGAGCAGCT 181 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 119 TATTCGACAGCTTAGCGACCGTTGTTTATACTCCGCCGCAAAGTGGGCAGGAGAACAGCT 178 Query 182 TGTGGGGATAGAGCAAGACCCGTCTAATTTTACACCTGCGAATACGAGGTTTCAGCGAGG 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TGTGGGGATAGAGCAAGACCCGTCTAATTTTACACCTGCGAATACGAGGTTTCAGCGAGG 238 Query 242 AAGCTCTAGCATCCGGAGAAGGTTCAGCACCAATGAATCTATTTCAACACCGTTACCTTC 301 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 239 AAGCTCTAGCATCCGGAGAAGGTTCAGCACCAATGAATCTATTTCAACACCATTACCTTC 298 Query 302 CGTTGGCTTCTCTCAAGCAGCTACTCCTCTCCCGGAAGAAGATGAAGCGATTGATGGTGA 361 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CGTTGGGTTCTCTCAAGCAGCTACTCCTCTCCCGGAAGAAGATGAAGCGATTGATGGTGA 358 Query 362 CATTTACCTTTTAGCAAAGTCCTATTTTGATTGTCGAGAGTATAGACGGGCCTCCCATAT 421 | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | Sbjct 359 CTTTTACCTTTTAGCAAAGTCCTACTTTGATTGTCGAGAGTACAGACGGGCCTCCCATGT 418 Query 422 GCTTCGTGACCAAGTGAGCAAGAAATCACTGTTCTTGCGTTACTATGCGCTTTATCTGGC 481 ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 419 GCTTCGTGATCAAGTGAGCAAGAAATCAGTGTTCTTGCGTTACTATGCCCTTTATCTGGC 478 Query 482 TGGAGAAAAACGGAAAGAGGAAGAAATGATAGAACTTGAAGGCCCTTTGGGTAAGAGTGA 541 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TGGGGAAAAACGGAAAGAAGAAGAAATGATAGAACTTGAAGGCCCTTTGGGTAAGAGTGA 538 Query 542 TGCCATAAACCGTGAACTGGTATCTTTGGAGAGGGATTTATCAGCTCTGAGGAGGACAGG 601 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 539 TGCCATAAACCGCGAACTGGTATCTTTGGAGAGGGACTTATCAGCTCTGAGGAGGACAGG 598 Query 602 AGCAATTGACTCTTTTGGATTATACTTGTATGGTGTGGTTCTTAAAGAAAAGGGAAATGA 661 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 599 AGCAATTGACTCTTTTGGATTATACTTGTATGGTGTGATTCTTAAAGAAAAGGGAAATGA 658 Query 662 AAGTCTTGCACGTGCCAGCCTTGTGGAGTCTGTCAACAGTTATCCTTGGAACTGGAGTGC 721 ||||||||| || |||||||| ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 659 AAGTCTTGCTCGGGCCAGCCTCGTGGAGTCTGTGAACAGCTATCCATGGAATTGGAGTGC 718 Query 722 CTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATCGAAATCTTGAATAGCCTTAACTTAAA 781 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| Sbjct 719 CTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATTGAAGTCTTGAATAGCCTTAATTTAAA 778 Query 782 CAATCACTGGATGAAAGAGTTTTTTCTTGGCAATGCTTATCAAGAACTCAGAATGCACAC 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 CAATCACTGGATGAAAGAGTTTTTTCTTGGCAATGCTTATCAAGAACTCAGAATGCACAC 838 Query 842 CGAGTCTTTGGCGAAGTACGAGTATTTGCAAGGTATTTTCAGTTTTAGCAATTACATCCA 901 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 839 CGAGTCTTTGGCGAAGTACGAGTATCTGCAAGGTATTTTCAGTTTTAGCAATTACATCCA 898 Query 902 AGCTCAAACTGCAAAAGCTCAGTATAGTCTTAGGGAATTCGACCAGGTTGAAATCATGTT 961 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 899 AGCTCAAACTGCAAAAGCTCAGTATAGTCTTAGGGAATTTGACCAGGTTGAAATCATGTT 958 Query 962 TGAAGAACTTCTGAGAAACGATCCATATCGGGTAGAAGATATGGATTTGTATTCTAATGT 1021 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 959 TGAAGAACTTCTGAGAAACGATCCCTATCGGGTGGAAGATATGGATTTGTATTCTAATGT 1018 Query 1022 TCTGTATGCAAAAGAAGCATGTGCTGCGCTGAGTTACCTTGCACATAAGGTGTTTTTGAC 1081 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1019 TCTGTATGCAAAAGAAGCATGTGCTGCGCTGAGTTATCTTGCACATAAGGTGTTTTTGAC 1078 Query 1082 TGATAAGTACAGACCTGAGTCTTGCTGCATCATTGGCAACTACTACAGTTTAAAAGGCCA 1141 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1079 TGATAAGTACAGACCTGAGTCTTGCTGCATCATTGGCAACTACTATAGTTTAAAAGGCCA 1138 Query 1142 GCATGAGAAAGCAGTTATGTATTTCCGGAGAGCTTTGAAACTGAACAAGAAGTATTTATC 1201 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1139 GCATGAGAAAGCAGTTATGTACTTCCGTAGAGCTTTGAAACTGAACAAGAAGTATTTATC 1198 Query 1202 TGCGTGGACTCTTATGGGCCATGAATATGTTGAGATGAAGAACACGCCTGCTGCCATTGA 1261 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TGCGTGGACTCTTATGGGACATGAATATGTTGAGATGAAGAACACGCCTGCTGCCATTGA 1258 Query 1262 TGCATATCGACGAGCTGTTGATATAAACCCTACTGATTATCGAGCTTGGTATGGGTTAGG 1321 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1259 TGCATATCGACGAGCTGTTGATATAAACCCTTGTGATTATCGAGCTTGGTATGGGTTAGG 1318 Query 1322 ACAAGCATATGAGATGATGGGGATGCCTTTCTATGCACTTCACTATTTTCGCAAATCCAT 1381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 ACAAGCATATGAGATGATGGGGATGCCTTTCTATGCACTTCACTATTTTCGCAAATCCAT 1378 Query 1382 ATTCTTTCTTCCAAATGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGA 1441 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 ATTCTTTCTTCCAAACGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGA 1438 Query 1442 ACAGCTTTACATGCTTGAAGAGGCCATCAAGTGTTACAAAAGAGCTGTGAACTGTACTGA 1501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 ACAGCTTTACATGCTTGAAGAGGCCATCAAGTGTTACAAAAGAGCTGTGAACTGTACTGA 1498 Query 1502 CACGGAAGGAATAGCACTTAATCAGCTGGCAAAGCTTCACCAGAAGCTTGGACGTAATGA 1561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 CACGGAAGGAATAGCACTTAATCAGCTGGCAAAGCTTCACCAGAAGCTTGGACGTAATGA 1558 Query 1562 AGAAGCTGCATATTACTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAGGATTAGAAGG 1621 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 AGAAGCTGCATTTTACTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAGGATTAGAAGG 1618 Query 1622 ACCGAACATGTTTGAGGCTTTGGTTTTTCTTGCCACACATTTTAAAAATCACAAGAAATT 1681 ||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| || Sbjct 1619 ACCAAACATGTTTGAGGCTTTAGTTTTTCTTGCTACACATTTTAAAACTCACAAGAAGTT 1678 Query 1682 CGAAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGACCTGAAAAAGAAAA 1741 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1679 CGAAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGACCTGAAAAAGAAAA 1738 Query 1742 GGCAAAGAGCTTACTCAGAGGGATCAGAATGGCGCAAACCGGTTTTCCTTCAATGGATCT 1801 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1739 GGCAAAGAGCTTACTCAGAGGGATCAGAATGGCGCAAACCGGTTTTCCTTCAATGGATCT 1798 Query 1802 CGAGCATTTTCCTATTTAGCTGTACTGTTCCGAATACTCAAAAGCTCTTTGAGAGAGAAT 1861 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1799 CGAGCATTTTCCTATTTAGCTGTACTGTTCCGAACACTCAAAAGCTCTTTGAGAGAGAAT 1858 Query 1862 GTCTCACATCATGTACACTATAAACCTTTGTACCAAGTTATATATTTCATCAAGATGATG 1921 |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1859 ATCTCCCATCATGTACACTATAAACCTTTGTACCAAATTATATATTTCATCAAGATGATT 1918 Query 1922 CTCCTGTGAT 1931 || ||||||| Sbjct 1919 CTTCTGTGAT 1928 > Ahg896116 jgi|Araly1|896116|Al_scaffold_0005_82 Length=564 Score = 904 bits (489), Expect = 0.0 Identities = 541/565 (96%), Gaps = 7/565 (1%) Strand=Plus/Plus Query 918 GCTCAGTATAGTCTTAGGGAATTCGACCAGGTTGAAATCATGTTTGA-AGAAC-TTCTGA 975 ||||||||| ||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 1 GCTCAGTATTGTCTTAGGGAATTTGACCACGTTGAAATCATGTTT-AGAGAACATT-TGA 58 Query 976 GAAACGATCCATATCGGGTAGAAGATATGGATTTGTATTCTAATGTTCTGTATGCAAAAG 1035 |||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||| Sbjct 59 GAAACGATCCCTATCGGATGGAAGATATGGATTTGTATTCTTATGTTCTGTATGCAAAAG 118 Query 1036 AAGCATGTGCTGCGCTGAGTTACCTTGCACATAAGGTGTTTTTGACTGATAAGTACAGAC 1095 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 119 AAGCATGTGCTGCGCTGAGTTACCTTGCACATAAGGTGGTTTTGACTGATAAGTACAGAC 178 Query 1096 CTGAGTCTTGCTGCATCATTGGCAACTACTACAGTTTAAAAGGCCAGCATGAGAAAGCAG 1155 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 179 CTGAGTCTTGCTGCATCATTAGCAACTACTACAATTTAAAAGGCCAGCATGAGAAAGCAG 238 Query 1156 TTATGTATTTCCGGAGAGCTTTGAAACTGAACAAGAAGTATTTATCTGCGTGGACTCTTA 1215 ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 239 TTATGTACTTCCGGAGAGCTTTGAAACTGAAC---AAGTATTTATCGGCGTGGACTCTTA 295 Query 1216 TGGGCCATGAATATGTTGAGATGAAGAACACGCCTGCTGCCATTGATGCATATCGACGAG 1275 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 296 TGGGCCATGAATATGTTGAGATGAAGAACACGCATGCTGCCATTGATGCATATCGACGAG 355 Query 1276 CTGTTGATATAAACCCTACTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGA 1335 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 356 CTGTTGATATAAACCCTTGTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGA 415 Query 1336 TGATGGGGATGCCTTTCTATGCACTTCACTATTTTCGCAAATCCATATTCTTTCTTCCAA 1395 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 416 TGATGGGGATGCCTTTCTATGCACTTTACTATTTTCGCAAATCCATATTCTTTCTTCCAA 475 Query 1396 ATGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGC 1455 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 ACGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGC 535 Query 1456 TTGAAGAGGCCATCAAGTGTTACAA 1480 ||||||||||||||||||||||||| Sbjct 536 TTGAAGAGGCCATCAAGTGTTACAA 560 > Ahg946853 jgi|Araly1|946853|scaffold_703082.1 Length=1889 Score = 846 bits (458), Expect = 0.0 Identities = 509/533 (95%), Gaps = 5/533 (1%) Strand=Plus/Plus Query 933 AGGGAATTCGACCAGGTTGAAATCATGTTTGA-AGAACTTCTGAGAAACGATCCATATCG 991 |||||||| ||||| ||||||||||||||| | ||||| ||||||||||||||| ||||| Sbjct 1011 AGGGAATTTGACCACGTTGAAATCATGTTT-AGAGAACATCTGAGAAACGATCCCTATCG 1069 Query 992 GGTAGAAGATATGGATTTGTATTCTAATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 1051 | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1070 GATGGAAGATATGGATTTGTATTCTTATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 1129 Query 1052 GAGTTACCTTGCACATAAGGTGTTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1111 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1130 GAGTTACCTTGCACATAAGGTGGTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1189 Query 1112 CATTGGCAACTACTACAGTTTAAAAGGCCAGCATGAGAAAGCAGTTATGTATTTCCGGAG 1171 ||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| Sbjct 1190 CATTGGCAACTACTACAATTTAAAAGGCCAGCATGAGAAAGCAGTTATTTACTTCCGGAG 1249 Query 1172 AGCTTTGAAACTGAACAAGAAGTATTTATCTGCGTGGACTCTTATGGGCCATGAATATGT 1231 |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1250 AGCTTTAAAACTGAAC---AAGTATTTATCGGCGTGGACTCTTATGGGCCATGAATATGT 1306 Query 1232 TGAGATGAAGAACACGCCTGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1291 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1307 TGAGATGAAGAACACGCATGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1366 Query 1292 TACTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGATGATGGGGATGCCTTT 1351 | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1367 TTGTGATTATCGAACTTGGTATGGGTTAGGACAAGCATATGAGATGATGGGGATGCCTTT 1426 Query 1352 CTATGCACTTCACTATTTTCGCAAATCCATATTCTTTCTTCCAAATGATTCTCGGTTGTG 1411 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1427 CTATGCACTTTACTATTTTCGCAAATCCATATTCTTTCTTCCAAACGATTCTCGGTTGTG 1486 Query 1412 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1464 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1487 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1539 Score = 318 bits (172), Expect = 8e-86 Identities = 188/196 (96%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1533 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATATTACTTCGAGAAGGATTTA 1592 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 1554 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATTTTATTTCGAGAAGGATTTA 1613 Query 1593 GAGAGAATGGATGCTGAAGGATTAGAAGGACCGAACATGTTTGAGGCTTTGGTTTTTCTT 1652 |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| Sbjct 1614 GAGAGAATGGATGCTGAAGGATTAGAAGGACCAAACAAGTTTGAGGCTTTAATTTTTCTT 1673 Query 1653 GCCACACATTTTAAAAATCACAAGAAATTCGAAGAAGCAGAAGTGTATTGCACCCGTCTT 1712 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1674 GCCACACATTTTAAAACTCACAAGAAATTCGCAGAAGCAGAAGTGTATTGCACCCGTCTT 1733 Query 1713 CTCGATTATAGTGGAC 1728 |||||||||||||||| Sbjct 1734 CTCGATTATAGTGGAC 1749 Score = 255 bits (138), Expect = 7e-67 Identities = 153/160 (96%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 716 GAGTGCCTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATCGAAATCTTGAATAGCCTTAA 775 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 854 GAGTGCATGGTCAGAGCTGCAGTCTCTGTGTACTTCGATTGAAATCTTGAATAGCCTTAA 913 Query 776 CTTAAACAATCACTGGATGAAAGAGTTTTTT-CTTGGCAATGCTTATCAAGAACTCAGAA 834 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 914 TTTAAACAATCACTGGATGAAAGAGTTTTTTTCTTGGCAATGCGTATCAAGAACTCAGAA 973 Query 835 TGCACACCGAGTCTTTGGCGAAGTACGAGTATTTGCAAGG 874 ||||||| | |||||||||||||||||||||||||||||| Sbjct 974 TGCACACTGGGTCTTTGGCGAAGTACGAGTATTTGCAAGG 1013 > Ahg941585 jgi|Araly1|941585|scaffold_602129.1 Length=1733 Score = 841 bits (455), Expect = 0.0 Identities = 508/533 (95%), Gaps = 5/533 (1%) Strand=Plus/Plus Query 933 AGGGAATTCGACCAGGTTGAAATCAT-GTTTGAAGAACTTCTGAGAAACGATCCATATCG 991 |||||||| ||||| ||||||||||| ||| | ||||| ||||||||||||||| ||||| Sbjct 855 AGGGAATTTGACCACGTTGAAATCATGGTTAG-AGAACATCTGAGAAACGATCCCTATCG 913 Query 992 GGTAGAAGATATGGATTTGTATTCTAATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 1051 | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 914 GATGGAAGATATGGATTTGTATTCTTATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 973 Query 1052 GAGTTACCTTGCACATAAGGTGTTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1111 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 974 GAGTTACCTTGCACATAAGGTGGTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1033 Query 1112 CATTGGCAACTACTACAGTTTAAAAGGCCAGCATGAGAAAGCAGTTATGTATTTCCGGAG 1171 ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 1034 CATTGGCAACTACTACAATTTAAAAGGCCAGCATGAGAAAACAGTTATGTACTTCCGGAG 1093 Query 1172 AGCTTTGAAACTGAACAAGAAGTATTTATCTGCGTGGACTCTTATGGGCCATGAATATGT 1231 |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1094 AGCTTTAAAACTGAAC---AAGTATTTATCGGCGTGGACTCTTATGGGCCATGAATATGT 1150 Query 1232 TGAGATGAAGAACACGCCTGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1291 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1151 TGAGATGAAGAACACGCATGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1210 Query 1292 TACTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGATGATGGGGATGCCTTT 1351 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1211 TTGTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATGTGAGATGATGGGGATGCCTTT 1270 Query 1352 CTATGCACTTCACTATTTTCGCAAATCCATATTCTTTCTTCCAAATGATTCTCGGTTGTG 1411 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1271 CTATGCACTTTACTATTTTCGCAAATCCATATTCTTTCTTCCAAACGATTCTCGGTTGTG 1330 Query 1412 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1464 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1331 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1383 Score = 318 bits (172), Expect = 8e-86 Identities = 188/196 (96%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1533 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATATTACTTCGAGAAGGATTTA 1592 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 1398 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATTTTATTTCGAGAAGGATTTA 1457 Query 1593 GAGAGAATGGATGCTGAAGGATTAGAAGGACCGAACATGTTTGAGGCTTTGGTTTTTCTT 1652 |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| Sbjct 1458 GAGAGAATGGATGCTGAAGGATTAGAAGGACCAAACAAGTTTGAGGCTTTAATTTTTCTT 1517 Query 1653 GCCACACATTTTAAAAATCACAAGAAATTCGAAGAAGCAGAAGTGTATTGCACCCGTCTT 1712 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1518 GCCACACATTTTAAAACTCACAAGAAATTCGCAGAAGCAGAAGTGTATTGCACCCGTCTT 1577 Query 1713 CTCGATTATAGTGGAC 1728 |||||||||||||||| Sbjct 1578 CTCGATTATAGTGGAC 1593 Score = 244 bits (132), Expect = 1e-63 Identities = 151/160 (94%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 716 GAGTGCCTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATCGAAATCTTGAATAGCCTTAA 775 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 698 GAGTGCATGGTCAGAGCTGCAGTCTCTGTGTACTTCGATTGAAATCTTGAATAGCCTTAA 757 Query 776 CTTAAACAATCACTGGATGAAAGAGT-TTTTTCTTGGCAATGCTTATCAAGAACTCAGAA 834 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 758 TTTAAACAATCACTGGATGAAAGAGTGTTTTTCTTGGCAATGCGGATCAAGAACTCAGAA 817 Query 835 TGCACACCGAGTCTTTGGCGAAGTACGAGTATTTGCAAGG 874 |||||| | |||||||||||||||||||||||||||||| Sbjct 818 TGCACATTGGGTCTTTGGCGAAGTACGAGTATTTGCAAGG 857 > Ahg896117 jgi|Araly1|896117|Al_scaffold_0005_83 Length=282 Score = 326 bits (176), Expect = 5e-88 Identities = 218/237 (92%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 1492 ACTGTACTGACACGGAAGGAATAGCACTTAATCAGCTGGCAAAGCTTCACCAGAAGCTTG 1551 ||||||||||||| |||||||| ||||| | | | | ||||||||||||||||||| Sbjct 1 ACTGTACTGACACAAAAGGAATATCACTT-A--A--T--C-AAGCTTCACCAGAAGCTTG 52 Query 1552 GACGTAATGAAGAAGCTGCATATTACTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAG 1611 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 53 GACGTAATGAAGAAGCTGCATTTTATTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAG 112 Query 1612 GATTAGAAGGACCGAACATGTTTGAGGCTTTGGTTTTTCTTGCCACACATTTTAAAAATC 1671 ||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| || Sbjct 113 GATTAGAAGGACCAAACAAGTTTGAGGCTTTAATTTTTCTTGCCACACATTTTAAAACTC 172 Query 1672 ACAAGAAATTCGAAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGAC 1728 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 173 ACAAGAAATTCGCAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGAC 229 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73933165545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5