BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48195.1
Length=3294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323421 jgi|Araly1|323421|fgenesh1_pm.C_scaffold_5000965 3145 0.0
> Ahg323421 jgi|Araly1|323421|fgenesh1_pm.C_scaffold_5000965
Length=5907
Score = 3145 bits (1703), Expect = 0.0
Identities = 1909/2010 (95%), Gaps = 7/2010 (0%)
Strand=Plus/Plus
Query 1153 AGATTTTGGTGACCTGAGCGCTGAAGTTAAAACCTTGGTGGTTCGTCAATCACTGGTAAC 1212
||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 3903 AGATTTTGGAGACCTGAGCGCTGGAGTTAAAACCTTGGTGGTTCGCCAATCACTGGTAAC 3962
Query 1213 AGATGAGCCTCTTCGGGGCAGTTGTCTTGGCAACAGTCAAACTGAAGATAGACCTGTAGT 1272
||||||| |||| || | |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 3963 AGATGAGTCTCTCCGTGACAGTTGTCTTAGCAACAGTCAAAATGAAGATAGACCTGTAGT 4022
Query 1273 CATGAATAACCTTCAATCTTGTAGCGCTGATGATGTCCTAGATATTACACCAACTGAGTT 1332
||||||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 4023 CATGAATTACCTTCAATCTTGTAGCACTGACGACGTCCTAGATATTACACCAACTGAGTT 4082
Query 1333 AGGTATTGAAGATTCTTCAGGTGGGGTTTGCGACCTTGATGACGATGTTTCTTCTGGACT 1392
||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||| ||
Sbjct 4083 AGGTATTGAAGATCCTTCAGGTGGGGTTTGCAACCTAGATGGCGATGTTTCTTCTGGTCT 4142
Query 1393 ACTTCATGAATCATCTGAGGATGGAAAACAGTCA-AATCCATTTGGGGAATGCACCTCAG 1451
||||||||||||||||||| |||||||||||||| || |||||||| || ||||||||||
Sbjct 4143 ACTTCATGAATCATCTGAGAATGGAAAACAGTCAGAA-CCATTTGGAGAGTGCACCTCAG 4201
Query 1452 AACCGTTGTTGGCATCTCAGAACTCTGATATGCCATCATCTAGAGATTCTCATCCTGTAA 1511
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 4202 AACCGTTGTTGGCATCTCAGAAGTCTGATATGCCATCATCTAGAGATTCTCATCCTGTAA 4261
Query 1512 CAAATGCCTCAAAAGTCACTTACACACAACCTAAGAAGGAGAACACTGAGCTAAATGACT 1571
||||||||| | |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 4262 CAAATGCCTTACAAGTCACTTACACACAACCTAAGAAGGAGAACACAGAGCTAAACGACT 4321
Query 1572 TCTATGATGATTTTGTTCATGATATGGAAGAAATACTGCTCGACTCTGGTGAATCATCTG 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4322 TCTATGATGATTTTGTTCATGATATGGAAGAAATACTGCTCGACTCTGGTGAATCATCTG 4381
Query 1632 GGGTAAGGTTTTCTAAGAATGACAAGATGTTCCAACTACAGCTCTCTCTGCCTAACAGGG 1691
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4382 GGGTAAGATTTTCTAAGAATGACAAGATGTTCCAACTACAGCTCTCTCTGCCTAACAGGG 4441
Query 1692 ATGGGGGGCAAACTGCTACAACGTCTGGTCTAGATGATTCATCTCCAACAGTTTCCCAGC 1751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4442 ATGGGGGGCAAACTGCTACAACGTCTGGTCTAGATGATTCATCTCCAACAGTTTCCCAGC 4501
Query 1752 GATTTAGGATTGATAGGGTTGAAGTTGTCGGTGTAAAGCaaaaaaaaGGTGATGTTTCGC 1811
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 4502 GATTTAGGATTGATAGGGTTGAAGTTGTCGGGGTAAAGCAAAAGAAAGGTGATGTCTCGC 4561
Query 1812 TGAGTGAAAGATTGGTTGGGGTGAAGGAATACACAGTGTATGTCATAAGGGTTTGGAGTG 1871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4562 TGAGTGAAAGATTGGTTGGGGTGAAGGAATACACAGTGTATGTCATAAGGGTTTGGAGTG 4621
Query 1872 GGAAAGACAAGTGGGAAATTGAAAGAAGATATCGTGATTTTTATAGTCTCTACCGTCGTT 1931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4622 GGAAAGACAAGTGGGAAATTGAAAGAAGATATCGTGATTTTTATAGTCTCTACCGTCGTT 4681
Query 1932 TGACATCTTTATTTGCTGATCAAGGCTGGACGCTTCCTACACCTTGGACCTCTGTAGAAA 1991
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 4682 TGACATCTTTATTTGCTGATCAAGGCTGGACGCTTCCTACACCTTGGGCCTCTGCAGAGA 4741
Query 1992 GAGAATCCAGGAAAATATTTGGAACATCGCCCAATGCTGTTGCTGAAAGGACTGTCCTGA 2051
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 4742 GAGAATCCAGGAAAATATTTGGAACATCGCCCAATGCCGTTGCTGACAGGACTGTCCTTA 4801
Query 2052 TTCAAGATTGTTTAAATTCAGTTCTCCAGTCCCGtttttttCCCACACTTCCAAATGCGT 2111
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 4802 TTCAAGATTGTTTAAATTCAGTTCTCCAGTCGCGGTTTTTTCCGACACTTCCAAATGCGT 4861
Query 2112 TACTTAGGTTTTTATCCCCTCAAGATGCATATGCTAATTCTTCGGGGTTGGATTCTATAG 2171
||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 4862 TACTTCGGTTTTTATCCCCTCAAGATGCATATGCTAATTCTTCTGGGTT---TTCTATAG 4918
Query 2172 TATCTCCAACAGGCTCTGCTGCCATCGA-TGCTGCTACAACCAGTTCTTCGTATGGAAAT 2230
||||||||||| |||||||| |||| | ||||||| ||| |||||||||||||||||||
Sbjct 4919 CATCTCCAACAGACTCTGCTGGCATC-ACTGCTGCTGCAAGCAGTTCTTCGTATGGAAAT 4977
Query 2231 ACCATCTCGTTCATTGTTGATATTCGACCTCACAAATCAGTAAAGCAGTTGCTAGAGGCT 2290
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 4978 ACCATCTCGTTCATTGTTGATATTCGACCTCAAAAATCAGTAAAGCAGTTGCTAGAAGCT 5037
Query 2291 CAGCATTACATTTGCGCTGGATGCCACAGATACTTTGATGATGGAGCCACTCTTGTGCGA 2350
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 5038 CAGCATTACATTTGCGCTGGATGTCATAGATACTTTGATGATGGAGCCACTCTTGTGCGG 5097
Query 2351 GACTTTGTGAAAGCTCTTGGATGGGGTAAGCCTCGGCTTTGCGAATATACTGGTCATTTG 2410
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 5098 GACTTTGTGAAAGCTCTGGGATGGGGTAAGCCTCGGCTTTGCGAATATACTGGTCAATTG 5157
Query 2411 TTTTGTTCTTCCTGCCATACAAATGACATGGCAGTACTGCCAGCAACAGTGTTACATCAT 2470
|||||||||||||||||| |||||||||||||||| |||||||| | |||||||||||||
Sbjct 5158 TTTTGTTCTTCCTGCCATGCAAATGACATGGCAGTTCTGCCAGCGAGAGTGTTACATCAT 5217
Query 2471 TGGGATTTTAATCGTTATCCAGTTTCTCAATTGGCAAAATCATATCTAGACTCCATACAC 2530
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 5218 TGGGATTTTAATCGTTATCCAGTTTCTCAATTGGCAAAATCATATCTGGACTCCATACAC 5277
Query 2531 GAGCAGCCTATGCTTTGTGTCAGTGCGGTCAACCCTTTTTTGTCCTCAAAAGTCCCTGCA 2590
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 5278 GAGCAGCCTATGCTTTGTGTCAGTGCGGTCAACCCTTTTCTGTCCTCGAAAGTCCCTGCA 5337
Query 2591 CTCAACCATATTATGAGCATCCGGAAAAGAATAACCATTATGCTTCCATATGTACGCTGC 2650
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5338 CTCAACCGTATTATGAGCATCCGGAAAAGAATAACCATTATGCTTCCATATGTACGCTGC 5397
Query 2651 CCATTCCAAAAGACACTCTACAAAGGACTCAGTTCTCGCAGATACCTTCTTGAGAGCTCT 2710
||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| ||
Sbjct 5398 CCATTCCGCAAGACACTCAACAAAGGACTCAGTTCTCGGAGATACCTTCTTGAGAGCACT 5457
Query 2711 GAATTTTTTGCTTTGAGAGATCTAATTGATCTCTCCAAAGGGCCATTTGCAGCACTTCCT 2770
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 5458 GATTTTTTTGCTTTGAGAGATCTAATTGATCTTTCTAAAGGGCCATTTGCAGCACTTCCT 5517
Query 2771 GCAATCGTGGAGACCGTTAGGAGGAAAATCCTGGAGCATATTACAGAACAGTGCCTTGTT 2830
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 5518 GCTATCGTGGAGACCGTTAGGAGGAAAATCCTGGAGCATATTACGGAACAGTGCCTTGTT 5577
Query 2831 TGTTGCGATGTGGGGGTTCCCTGTAATGCCCGACAAGCTTGTGACGACACATCCTCTTTA 2890
||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 5578 TGTTGTGATGTGGGGATTCCCTGTAATGCTCGACAAGCTTGTGACGACACATCCTCTTTA 5637
Query 2891 ATATTTCCATTTCAGGAGAAAGACGAGGTTAGCAAATGCCGGTTATGCGGTTCAGTTTTC 2950
||||||||||| ||||||||||| ||||||| ||||||||||| |||||||| ||||||
Sbjct 5638 ATATTTCCATTCCAGGAGAAAGATGAGGTTAACAAATGCCGGTCGTGCGGTTCGGTTTTC 5697
Query 2951 CACAAGAAATGCTTATCAAGACTCTCAAACTGCCATTGCGGAGCACAACTAAAGCCGAAC 3010
||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 5698 CACAAGAGATGCTTAGCAAGACTCTCAAGCTGCCATTGCGGAGCACAACTAAAGCCGAAA 5757
Query 3011 AAGAACCCTGGAGAGCTGCAAGTATCGGAAAAGAAATCAGATTCTACATCTGTCTTGCCT 3070
|||| ||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||
Sbjct 5758 AAGAGCCCTGGAGAGCTGCAAGCATCGGAGAAGAAATCAGATTCTACGTCTGTATTGCCT 5817
Query 3071 CTAAGATTCCTCTCAAGTTTATTTGGAAAGACAAAACAAGACAAAGAAACCACTATTCTT 3130
||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 5818 CTACGATTCCTCTCAAGTTTATTTGGTAAGACAAAACAAGACAAAGAGACCACTATTCTA 5877
Query 3131 ATGGGTTCACTTCCAACAAACGATCTATAA 3160
||||||||||||||||| ||||||||||||
Sbjct 5878 ATGGGTTCACTTCCAACCAACGATCTATAA 5907
Score = 625 bits (338), Expect = 7e-178
Identities = 417/454 (92%), Gaps = 10/454 (2%)
Strand=Plus/Plus
Query 710 AGTGGTATAGATAGAGAAGATGGAAGTTCCATAGATGATGATGAACATTCTGAT-G-G-T 766
||||||||||||||||||| ||||||||| || | |||||||||||||||||| | | |
Sbjct 3430 AGTGGTATAGATAGAGAAGGTGGAAGTTCGAT--A-GATGATGAACATTCTGATGGTGAT 3486
Query 767 GATGACTCGCTTAGTGATTCAGGTGATCATTCTCGTAATTATGTTTCACGGAATTTACAG 826
|||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 3487 GATGACTCACTTAGTGATTCAGGTGATCATTCTCGTAAATATGTTCCACGGAATTTTCAG 3546
Query 827 TTTCAAAAGGAGGCTAAAGATGAGAACGATAATCCATTTCTCATCAATTCTTCCACTGCC 886
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3547 TTTCAAAAGGAGCCTAAAGATGAGAATGATAATCCATTTCTCATCAATTCTTCCACTGCC 3606
Query 887 TTTGGTACAAATGATTGGGATGAGTTTGAGCTTGAAGCCACTGAACTTGTTGACACTCAA 946
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3607 TTTGGTACAAATGATTGGGATGAGTTTGAGCTTGAAGCCACAGAACTTGTTGACACTCAA 3666
Query 947 TTTGACTTCAGCGGGTTTGAGAAGCGTGATAAAGGGTGTACTGAAAGTGAAGGGACATCC 1006
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3667 TTTGAATTCAGTGGGTTTGAGAAGCGTGATAAAGGGTGTACTGAAAGTGAAGGGACATCC 3726
Query 1007 ACAGATTTATTCTCTGTAGCTTTACAAAAGCTTCCAGATGTAGTTCAAGCAGAAAAA-GG 1065
||| | ||| |||||| | |||||||||||||||||| ||| |||||||| ||| ||
Sbjct 3727 ACAAAAGCATTTTCTGTATCGTTACAAAAGCTTCCAGATATAGCTCAAGCAGGAAATCGG 3786
Query 1066 GGAAGAACATGA-AAATGTAACTGTGAGCACTAGACATGCTCCAGATGTAGGTGACTTCA 1124
||| || ||| | ||| |||||| |||||||||||| ||||||||||||||||||||||
Sbjct 3787 GGA-GAGCAT-ACAAACGTAACTATGAGCACTAGACTTGCTCCAGATGTAGGTGACTTCC 3844
Query 1125 GTGCAAATATTGAAGATATTAGATCTAGAGATTT 1158
||||||||||||||||||||||||||||||||||
Sbjct 3845 GTGCAAATATTGAAGATATTAGATCTAGAGATTT 3878
Score = 381 bits (206), Expect = 2e-104
Identities = 291/328 (89%), Gaps = 22/328 (7%)
Strand=Plus/Plus
Query 357 AGGAGGAATCATCGAGAGTTGATTCGCCAG---GTTCGTCGTTACATTACTCGTCTTGTG 413
||||||||||||||||||||||||| | || |||| ||||||||||||||||| ||||
Sbjct 3023 AGGAGGAATCATCGAGAGTTGATTCTCTAGATTGTTCATCGTTACATTACTCGTCATGTG 3082
Query 414 GTGAATCAGAGTTTGAGCGGTATTGTAGTGCGAATTCGGCTTTGGGAACGCCGAGTATGT 473
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3083 GTGAATCAGAGTTTGAGCGGTATTGTAGTGCGAATTCAGCTTTGGGAACGCCGAGTATGT 3142
Query 474 GTAGCTCTACTGGACCGTTTCAGGATTC--------C-GAATTTGAGAATTTTAGCTTGG 524
|||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 3143 GTAGCTCTACTGGACCGTTTCAGGATTCGTTGGAATCTGAATTTGAGAATTTTAGCTTGG 3202
Query 525 GACCAAGTC-TAGTTAAGCTCTCTTCTTTGGATA-TGTCACGATTAGGTGATCGAGGTAT 582
||||||||| || | ||||||||||||||||||| | ||||||||||| ||||||| ||
Sbjct 3203 GACCAAGTCCTA-TAAAGCTCTCTTCTTTGGATAATA-CACGATTAGGTAATCGAGGAAT 3260
Query 583 CC-ATTT-CTTCGATGAGGGCGGCTCTTGTAATGGTAGAAGTAGTAGTGCGCCCGGGTTA 640
|| |||| || |||| ||| || |||||||||||||||||||| ||||| |||||||||
Sbjct 3261 CCGATTTTCT--GATGGGGGTGGGTCTTGTAATGGTAGAAGTAGAAGTGCACCCGGGTTA 3318
Query 641 AACACCGGGAATGTGAACA-TCGATATG 667
||||||||||||| ||||| | ||||||
Sbjct 3319 AACACCGGGAATGGGAACACT-GATATG 3345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124334090991
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5