BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48210.1 Length=1311 Score E Sequences producing significant alignments: (Bits) Value Ahg897667 jgi|Araly1|897667|Al_scaffold_0005_1633 1441 0.0 > Ahg897667 jgi|Araly1|897667|Al_scaffold_0005_1633 Length=948 Score = 1441 bits (780), Expect = 0.0 Identities = 893/949 (94%), Gaps = 2/949 (0%) Strand=Plus/Plus Query 77 ATGGAACAAATTAGCAACATCGCTGGTGGAGACACAACGAAAG-AGACTATGGCGTCTCT 135 ||||||||||||||||||| |||||||||||| |||||| ||| | |||||||||||||| Sbjct 1 ATGGAACAAATTAGCAACAACGCTGGTGGAGATACAACG-AAGAAAACTATGGCGTCTCT 59 Query 136 GGGTCTCATCTGTGAGAAAGATATTCATGAACAGCGTCTTAAAATCGATTCTTTCATCGC 195 ||||||||| |||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct 60 GGGTCTCATTTGTGAGAAAGATATAAATGAACAGCGTCACAAAATCGATTCCTTCATCGC 119 Query 196 TTCTCCTTTCCGGAGATCGATGAACTCTTTAGTGGAGCGAGCTCAAGCCACTGCTCAAAG 255 |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| Sbjct 120 TTCTCCTTTCCGGAGATCGAAGGACTCTTTAGTGGAGCGAGCTCAAGCCACTGCCCAAAA 179 Query 256 CCAAGTGGAACTAATGAATTTGAAAGCGGATCTGAGAGAAGCAGAGGATGAGCTAGTTAA 315 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 180 CCAAGTGGAACTAGTGAATTTGAAAGCGGATCTGAGAGAAGCAGAGGATGAGCTCGTTAA 239 Query 316 AGTGTTGGCAGTGAAAACCCGTAAAGAGGCACGGCAAATGGGGATAAGAGATTCCATTTC 375 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 AGTGTTAGCAGTGAAAACCCGTAAAGAGGCACGGCAAATGGGGATAAGGGATTCCATTTC 299 Query 376 TGCAACACAATCTAGGATTGAAGTACTTAGAAGAAATTTGCAGCTACAGAAGTCAAAGAA 435 |||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| Sbjct 300 TGCAACACAATCTAGGATTGAAGTGCTTAGAAGAACTTTGCAGTTACAGAAGTCAAAGAA 359 Query 436 GGATGATTCTGTGAGAATTATCTCCCAACAGTTGCAAGCCTTGTCAAAATCGAAGGACAA 495 ||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| || Sbjct 360 GGAAGATTCTGTGAGAATTATCTCCCAACAGTTGCAAGCTTTGTCAACATCTAAGGATAA 419 Query 496 CGCTGGTAAAGTCACCGAAGACAAAGCAGATATTCATGAAGCAATCTCTTGGTATAATCA 555 ||||||||||||| ||||||||| |||| || |||||||| ||||||||||||||||| Sbjct 420 TGCTGGTAAAGTCAGTGAAGACAAAACAGACATCCATGAAGCCATCTCTTGGTATAATCA 479 Query 556 TGCTCTCGGTTTTCACGTTGAAGCTGGACATGGAGTTAAATTCACATTCACCAACATTGA 615 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 480 GGCTCTCGGTTTTCACGTTGAAGCTGGACATGGAGTGAAATTCACATTCACCAATATTGA 539 Query 616 TGCAAAAAGGCCGACCCGCGAATTTTCGTTCACAGTTCACTATGGAAATGACATCTACAC 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TGCAAAAAGGCCGACCCGCGAATTTTCGTTCACAGTTCACTATGGAAATGACATCTACAC 599 Query 676 ACTATTGGATAGCGATCTGCAATTGGATTACATCAACGAGATGGTTCAAGAATTGAATAA 735 |||||||||| |||| |||||||||||| |||||||||| |||||||||||||||||||| Sbjct 600 ACTATTGGATTGCGACCTGCAATTGGATGACATCAACGATATGGTTCAAGAATTGAATAA 659 Query 736 AACCAATGACCTTTTCAGATTTGTTCGTCTGATGAGGGAGCAGTTTCTGAAATCCACTTT 795 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 660 AACCAATGACCTTTTCAGATTTGTTCGTCTGATGAGGGATAAGTTTCTGAAATCCACTTT 719 Query 796 ATCTGAGCTGCCAACACATTCAGGACAACTGCAACAGGAAACGTCTGCCATATCTGCTTC 855 ||||||| ||||||||||||||| ||| |||||||||||||| |||| |||||||||||| Sbjct 720 ATCTGAGTTGCCAACACATTCAGAACATCTGCAACAGGAAACTTCTGTCATATCTGCTTC 779 Query 856 AGCTCCAGCTATATCATTTTCCACTGATACAAACATGTCAACTCCAGAAAACAAAAGATC 915 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 780 AGCTCCAGCTATATCATTTTCCACTGATACAAACATGTCAACTCCAGAAAACAAGAGATC 839 Query 916 TAAGGTTCAAGTGAATCGGCGACAAAAAAGAGGTAGCGAATCACCACTCCTAGCTCCTGT 975 |||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 840 TAAGGTTCAAGTGATTCGGCGACAAAAAAGAGCTAGCGAATCACCACTCCTATCTCCTGT 899 Query 976 ATCCACATCTGCCACTCGCCGTTCTTCTCGCTTTAAGGGTAAGAAATGA 1024 ||| |||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 900 ATCTGCATCTGCCACTCGCCGGTCTTCTCGCCTTAAGGGTAAGAAATGA 948 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49026071262 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5