BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48240.1 Length=988 Score E Sequences producing significant alignments: (Bits) Value Ahg937580 jgi|Araly1|937580|scaffold_501771.1 857 0.0 > Ahg937580 jgi|Araly1|937580|scaffold_501771.1 Length=582 Score = 857 bits (464), Expect = 0.0 Identities = 547/587 (93%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 45 GAAACCTAGAAGCTTCTAACAATGGTGGCCGTAGCTGAGAATCAGAAAACGAAGAACAGT 104 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAACCTAGAAGCTTCTAAAAATGGTGGCCGTAGCTGAGAATCAGAAAACGAAGAACAGT 60 Query 105 CTCAAGTTCCTCTGCAGTTACGGCGGAAGAATCCTCCCTCGTTCTATCGATGGAAAGCTC 164 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct 61 CTCAAGTTCCTCTGCAGTTACGGTGGCAGAATCCTCCCTCGTTCTATCGATGGAAATCTC 120 Query 165 CGTTACGTCGGCGGTTTCACCAGAGTACTCTCCGTTCATCACTCTATCTCTTTCACAGAA 224 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 CGTTACGTCGGCGGTTTCACCAGAGTACTCTCCGTTCATCACTCAATCTCTTTCACAGAA 180 Query 225 TTGACGATGAAGTTGGAGGAATTTTGTGGATACTCCGTTGAATTGAAGTGTCAATTACCA 284 |||| |||||| ||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 181 TTGATGATGAAATTGGAGGAATTTTGTGGCTATTCCGTTGAATTGAAGTGTCAATTACCA 240 Query 285 AATGGAGATCTCGAGACACTAATCTCCGTCAAATCGGACGAAGATCTGGTGAATATCGTT 344 || |||||||| ||||||||||| |||||||| || || || ||||| | |||||| ||| Sbjct 241 AACGGAGATCTGGAGACACTAATTTCCGTCAAGTCAGATGAGGATCTAGCGAATATGGTT 300 Query 345 GAAGAATATGATCGTGTTTACGGAGGCAAGATCCGTGCGATTTTGTCGCCTCCTAAGCAG 404 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 GAAGAATACGATCGTGTTTACGGAGGCAAGATCCGTGCGATTTTGTCGCCTCCCAAGCAG 360 Query 405 ATGTCACCACGATCTAGCGGCGGCGGTGGAGATCTATCGCCGAAATCGCCGTTCTCCGTC 464 ||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| Sbjct 361 ATGTCGCCACGATCTAGCGGCGGTTGTGGAGATCTATCACCGAAATCGCCATTCTCCGTC 420 Query 465 GTGGCTTCTCCATCTCCGCCTCGGTATTGTGTGGCTCCGCCGACGGAGAATCTTCTCAGT 524 ||||||||||| ||||||||||| || ||| |||||||| | ||||||||||||||||| Sbjct 421 GTGGCTTCTCCTTCTCCGCCTCGTTACTGTTTGGCTCCG--G-CGGAGAATCTTCTCAGT 477 Query 525 AGATTCCGTATGAGAACTGGAGAATACTCTCGTTGCTGTAACTGCCGTGTTC-CAAACAG 583 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || Sbjct 478 AGATTCCGTATGAGAACTGGAGAATATTCTCGTTGCTGTAACTGCCGTGTTCACAA-CAA 536 Query 584 AGACTCCAAGCTTATCTGGCAATAACGTCAGACGGAgaaataaaaat 630 |||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 537 AGACTCCAAGCTTATCTGGCAATAACGTT-GACGGTGAAATAAAAAT 582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36712369071 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5