BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48390.1 Length=2344 Score E Sequences producing significant alignments: (Bits) Value Ahg323438 jgi|Araly1|323438|fgenesh1_pm.C_scaffold_5000982 2673 0.0 > Ahg323438 jgi|Araly1|323438|fgenesh1_pm.C_scaffold_5000982 Length=1941 Score = 2673 bits (1447), Expect = 0.0 Identities = 1735/1871 (93%), Gaps = 32/1871 (2%) Strand=Plus/Plus Query 272 AGTCTCCTCCT-CTGTTTGCTGTCAAGAAAGATGATGATAAAGATCATACTTGTGATACT 330 ||||||||||| || |||||||| ||||||||||| | ||||||| || |||||||||| Sbjct 83 AGTCTCCTCCTCCT-TTTGCTGTAAAGAAAGATGA-G--AAAGATCCTAATTGTGATACT 138 Query 331 GGAGAGGAACCTTATGCACTTGTTGGTTCCCCTGTGTTTA-ACCCTTTGGAAGATTACAA 389 ||||||||||||||||||||||||||||| || ||| ||| |||||||||| |||||||| Sbjct 139 GGAGAGGAACCTTATGCACTTGTTGGTTCGCCGGTG-TTAGACCCTTTGGATGATTACAA 197 Query 390 AAGAGAAGTAGTTTCCATCATCGATGAATACTTTAGCTCTGGGGATGTTGAAGTGGCTGC 449 |||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||||| Sbjct 198 AAGAAAAGTAGTTTCCATCATCGAAGAATACTTTAGCTCTGGGGATGGGGAAGCGGCTGC 257 Query 450 TTCTGACCTTATGGATCTTGGTTTGAGCGAATACCATCCTTATTTTGTCAAGAGGCTTGT 509 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 258 TTCTGACCTTATGGATCTTGGTTTGAGTGAATACCATCCTTATTTTGTCAAGAGGCTTGT 317 Query 510 TTCCATGGCCATGGACAGGGGCAATAAGGAGAAGGAGAAGGCTTCGGTGTTACTCTCGCG 569 ||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 318 TTCGATGGCCATGGACAGGGGCGATAAGGAGAAGGAGAAGGCTTCGGTGTTGCTCTCGCG 377 Query 570 GTTGTACGCTCTTGTTGTTTCACCTGATCAAATCAGGGTTGGGTTTATTAGACTGCTTGA 629 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 378 GTTGTACGCTGATGTTGTTTCACCTGATCAAATCAGGGTTGGGTTTATTAGACTGCTCGA 437 Query 630 GTCCGTTGGTGATCTTGCTTTGGACATACCTGATGCTGTTAATGTACTTGCTTTGTTTAT 689 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 438 GTCCGTTGGTGATCTTGCTTTGGACATACCTGATGCTGTTAATGTCCTTGCTTTGTTTAT 497 Query 690 TGCCCGGGCCATCGTCGATGAAATTCTTCCCCCCGTTTTTCTGGCTAGAGCAAAGAAGAC 749 ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 498 TGCTCGGGCCATCGTCGATGAAATTCTTCCCCCGGTTTTTCTAGCTAGAGCAAAGAAGAC 557 Query 750 TCTACCGCATTCCTCTCAAGGGTTTCAGGTTATCTTAGTTTCAGAAAATAGCTATCTCTC 809 ||||||| |||||||| |||||||||||| ||||||| | ||||||| ||||||||||| Sbjct 558 TCTACCGGATTCCTCTGAAGGGTTTCAGGCTATCTTAACTGCAGAAAAGAGCTATCTCTC 617 Query 810 TGCTCCTCACCACGCAGAGCTAGTGGAGACAAAATGGGGTGGGAGTACTCACATTACGGT 869 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 618 TGCTCCTCACCACGCAGAGCTAGTGGAGAAAAAATGGGGTGGGAGTACTCACATTACGGT 677 Query 870 AGAAGAAACAAAGAGAAAGATATCTGA-ATTTTTGAATGAATATGTAGAGAATGGTGACA 928 |||| ||||||||||||||||||| || ||||| ||| |||||||||||||||||||||| Sbjct 678 AGAAAAAACAAAGAGAAAGATATCCGACATTTT-GAAGGAATATGTAGAGAATGGTGACA 736 Query 929 CTCGTGAAGCTTGTAGATGCATCAGGGAGTTAGGTGTCTCGTTTTTCCATCACGAGATCG 988 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | | Sbjct 737 CTCGTGAGGCTTGTAGATGCATCAGGGAGTTAGGTGTCCCGTTTTTCCATCACGAGGTTG 796 Query 989 TGAAGAGTGGTTTGGTTCTAGTGATGGAGTCCCGAACATCCGAGCCGCTGATACTAAAAT 1048 ||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 797 TGAAGAGAGGTTTGGTTCTAGTGATGGAGTCTAGAACATCTGAGCCGCTGATACTAAAAC 856 Query 1049 TGTTGAAAGAAGCTACAGAAGAAGGTCTCATTAGTTCGAGTCAAATGGCGAAAGGGTTCT 1108 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 857 TGTTGAAAGAAGCTTCAGAAGAAGGTCTCATCAGTTCGAGTCAAATGGCGAAAGGGTTCT 916 Query 1109 CCCGAGTAGCAGATAGTCTTGATGATCTTTCTCTTGACATCCCATCTGCTAAAACTCTGT 1168 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 917 CCCGAGTAGCAGAGAGTCTTGATGACCTTTCTCTTGACATCCCATCTGCTAAAACTCTGT 976 Query 1169 TTGAGTCAATAGTTCCCAAGGCTATAATAGGAGGTTGGCTCGACGAAGATTCGTTTAAAG 1228 |||| |||||||||||||||||||||| | ||||||||||||||||||| | ||||||| Sbjct 977 TTGAATCAATAGTTCCCAAGGCTATAACCGAAGGTTGGCTCGACGAAGATACATTTAAAG 1036 Query 1229 AACGCTCTGATCAAAATGGGGGC--A------G----CGAAAATCTAAGG-CGGTT-CAA 1274 |||| |||||||||||||| ||| | | |||||| || || | || ||| Sbjct 1037 AACGTTCTGATCAAAATGGAGGCTTACCAATTGAAGACGAAAAACTCAGATC--TTACAA 1094 Query 1275 GAAGGATGCAG-AGACCATAATTCAAGAGTATTTCCTTTCTGATGATATCCCCGAGCTAA 1333 ||| |||| | | || ||| |||| |||||||||||||||||||| || |||||||||| Sbjct 1095 GAAAGATGTGGTA-ACTATAGTTCAGGAGTATTTCCTTTCTGATGACATTCCCGAGCTAA 1153 Query 1334 TCCGCAGTCTTGAAGATTTAGGATTACCCGAATATAACCCGGTATTCTTGAAGAAACTCA 1393 |||||||||||| |||| |||||| |||||||||||||| |||||| ||||||||||||| Sbjct 1154 TCCGCAGTCTTGTAGATATAGGATCACCCGAATATAACCTGGTATTTTTGAAGAAACTCA 1213 Query 1394 TCACTCTTGCTATGGATAGGAAGAACAAAGAGAAAGAAATGGCTTCTGTTTTTCTCGCTT 1453 |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| || Sbjct 1214 TCACTCTTGCTATGGATAGGAAGAACAAGGAGAAAGAAATGGTTTCTGTTCTTCTCTCTG 1273 Query 1454 CTCTTCACATGGAGATGTTCTCAACAGAAGACTTCATAAATGGTTTCATCATGCTCCTCG 1513 |||||||||||||||||||||||||| |||| |||||||| || |||||||||||||||| Sbjct 1274 CTCTTCACATGGAGATGTTCTCAACAAAAGATTTCATAAACGGATTCATCATGCTCCTCG 1333 Query 1514 AATCCGCAGAAGATACAGCATTAGACATCTTAGCAGCATCAGACGAGCTTGCTCTGTTTC 1573 |||| ||||| || ||||||||||| ||||||| |||||| |||||||||||| |||||| Sbjct 1334 AATCTGCAGATGACACAGCATTAGATATCTTAGAAGCATCGGACGAGCTTGCTTTGTTTC 1393 Query 1574 TAGCTAGAGCTGTGATCGATGATGTCTTGGCTCCGCTTAATCTCGAAGAGATCTCAAACA 1633 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1394 TAGCTAGAGCTGTGATCGATGATGTCTTGGCTCCGCTTAATCTTGACGAGATCTCAAACA 1453 Query 1634 GCTTACCGCCAAAATCAACCGGAAGCGAAACCATCCGCTCAGCTCGGTCTCTGATATCCG 1693 ||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 1454 GCTTACCACCAAAATCAACCGGTTGCGAAACCATCCGCTCAGCTCGGTCACTGATATCCG 1513 Query 1694 CTCGACACGCAGGAGAAAGACTCCTGAGAAGCTGGGGTGGGGGAACGGGCTGGGCAGTGG 1753 |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 1514 CTCGACACGCAGGAGAAAGACTCCTGAGAAGCTGGGGTGGCGGAACTGGCTGGGCGGTGG 1573 Query 1754 AAGACGCTAAAGACAAGATCTGGAAACTTCTAGAAGAATACGAAGT-AGGAGGAGTAATA 1812 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1574 AAGACGCTAAAGACAAGATCTGGAAACTTCTAGAAGAATACGAA-TCAGGAGGAGTAATA 1632 Query 1813 TCAGAGGCTTGTCGATGCATACGCGATCTAGGAATGCCGTTTTTTAACCACGAGGTGGTT 1872 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1633 TCAGAGGCTTGTCGATGCATACGCGATCTAGGGATGCCGTTTTTTAACCATGAGGTGGTT 1692 Query 1873 AAGAAGGCTTTGGTAATGGCAATGGAGAAGAAGAACGATCGGATGCTTAATCTCTTGCAG 1932 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1693 AAGAAAGCTTTGGTAATGGCAATGGAGAAGAAGAACGATCGGATGCTTAATCTCTTGCAG 1752 Query 1933 GAGTGTTTTGCTGAAGGGATCATTACTACTAACCAAATGACAAAAGGGTTTGGTCGAGTC 1992 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1753 GAGTGTTTTGCTGAAGGGATCATTACTACTAACCAAATGACAAAAGGGTTTGGTCGAACC 1812 Query 1993 AAAGATAGTCTTGATGACTTATCTTTGGATATTCCAAATGCAGAA-GAGAAATTTAACTC 2051 ||||| ||||| |||||||||||||||||||||||||| || ||| |||||||||||||| Sbjct 1813 AAAGAGAGTCTCGATGACTTATCTTTGGATATTCCAAACGC-GAAAGAGAAATTTAACTC 1871 Query 2052 GTATGTTGCGCACGCTGAAGAGAACGGTTGGCTACACCGCGATTTTGGGTGTTCTACAGA 2111 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1872 GTATGTTGCGGACGCTGAAGAGAACGGTTGGCTACACCGCGATTTTGG-TGTTCTACAGA 1930 Query 2112 TTCTTGACTGA 2122 ||||||||||| Sbjct 1931 TTCTTGACTGA 1941 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88293187910 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5