BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48425.1
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347932 jgi|Araly1|347932|fgenesh1_pg.C_scaffold_5001324 1718 0.0
> Ahg347932 jgi|Araly1|347932|fgenesh1_pg.C_scaffold_5001324
Length=2055
Score = 1718 bits (930), Expect = 0.0
Identities = 1063/1128 (94%), Gaps = 5/1128 (0%)
Strand=Plus/Plus
Query 63 TCTCCATAAA-GCTACGAAATTGCTATAGCTATGAAGCGATTCTTCAAGCCCATAGAGAA 121
|||||| ||| | |||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 930 TCTCCAGAAACACCACGAAATTGCTAAAGCTATGAAGCGATTCTTTAAGCCCATAGAGAA 989
Query 122 GGAGAATTCTCCGGCGGCTAAGAAACCCTGCCTTTCGCCGGAAAAGCGTGACGGAGACGG 181
|||| ||| |||||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 990 GGAGGGTTCAACGGCGGCTAAGAAACCCTGCCTCTCGCCGGAAAAGCGTAAAGGAGACGG 1049
Query 182 AGATGGAGTTGAAGAAGAGAAGAACCAGAACGAGCCGTCCAAGTTTATGACGTGGAACGC 241
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1050 AGATGGAGTTGAAGAAGAGAAGAACCAGAAAGAGCCGTCCAAGTTTGTGACGTGGAACGC 1109
Query 242 TAATAGCTTCCTCCTTCGGGTGAAAAATGACTGGTCTCAGTTCTCTAAGTTCGTCTCCGA 301
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1110 TAATAGCTTCCTCCTTCGGGTGAAGAATGACTGGTCTCAGTTCTCTAAGTTCGTCTCCGA 1169
Query 302 TTTTGACCCCGATGTCATCGCCATACAGGAAGTAAGGATGCCTGCTGCTGGTGGAAAGGG 361
||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 1170 TTTTGACCCGGATGTCATCGCCGTACAGGAAGTAAGAATGCCTGCTGCTGGTGGGAAGGG 1229
Query 362 AAAACCTAAAAA-CCATGAAGAGTTGAGTGATGACACGAAAGTTTTGCGTGAGGAAAAAC 420
|||||| ||||| || |||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1230 AAAACCAAAAAATCC-TGAAGAGTTGAGCGATGACACGAAAGTTCTGCGTGAGGAAAAAC 1288
Query 421 AGATTTTGACACGGGCTCTCTCAAGTCCACCATTTGGAAATTATGGGGTTTGGTGGTCTC 480
||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 1289 AGATTTTGACAAGGGCTCTCTCAAGTCCACCTTTTGGAAATTATCGAGTTTGGTGGTCTC 1348
Query 481 TCGCGGACTCGAAGTATGCAGGGACAGCTTTGTTAGTGAAAAAATGTTTCAAGCCTCGA- 539
|||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 1349 TCGCAGACTCAAAGTATGCAGGGACAGCTTTGTTAATGAAAAAATGTTTCAAGCC-CAAG 1407
Query 540 AAAGTTTACTTTAACTTGGACAAATTAGCATCTAAACATGAACCTGATGGTCGTGTTATC 599
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1408 AAAGTTTACTTTAACCTGGACAAATTAGCATCTAAACATGAGCCTGATGGTCGTGTTATC 1467
Query 600 TTAGCTGAATTTGAGACATTTCGTCTTTTGAATACGTATTCGCCTAACAATGGTTGGAAA 659
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1468 TTAGCTGAATTTGAGACATTTCGCCTTTTAAATACGTATTCACCTAACAATGGTTGGAAA 1527
Query 660 GATGAAGAGAATGCGTTTCAGAGGAGAAGAAAATGGGACAAGAGGATTGTTGAATTCCTC 719
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1528 GATGAGGAGAATTCGTTTCAGAGGAGAAGAAAATGGGACAAGAGGATTGTTGAGTTCCTC 1587
Query 720 AACAAAACATCTGATAAACCGCTAATATGGTGTGGCGACTTAAATGTCAGTCATGAGGAG 779
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1588 AACAAAACATCTGATAAACCTCTGATATGGTGTGGCGACTTAAATGTCAGTCATGAGGAG 1647
Query 780 ATAGATGTTAGCCACCCAGAATTTTTTGCTACAGCAAAGCTTAATGGTTATGTTCCTCCA 839
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1648 ATAGATGTTAGCCACCCAGAGTTTTTCGCAACAGCAAAGCTTAATGGTTATGTTCCTCCA 1707
Query 840 AACAAAGAGGACTGCGGACAGCCTGGATTTACACCATCTGAGAGAGGACGCTTCGGGGCA 899
|||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1708 AACAAAGAGGACTGTGGACAGCCTGGATTTACACCATCTGAGAGACGACGCTTTGGGGCA 1767
Query 900 ACTATAAAAGAAGGAAGGCTTGTTGATGCATACCGGTATCTACACAAGGAGCAAGAAATG 959
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1768 ACTATGAAAGAAGGAAGGCTTGTTGATGCATACCGGTATTTACACAAGGAGCAAGACATG 1827
Query 960 GAAAGTGGCTTCTCATGGTCGGGGAATCCCATTGGAAAGTACCGGGGAAAGAGGATGAGG 1019
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1828 GAAAGTGGTTTCTCATGGTCGGGGAATCCCATTGGAAAGTACCGCGGAAAGAGGATGAGG 1887
Query 1020 ATCGACTATTTTCTGGTCTCTGAACAACTCAAAGACCGTATAGTTTCTTGTAAGATGCAC 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 ATCGACTATTTTCTGGTATCTGAACAACTCAAAGACCGTATAGTTTCTTGTAAGATGCAC 1947
Query 1080 GGTCGTGGGATAGAACTTGAAGGTTTCCATGGGAGTGATCATTGTCCGGTTACACTCGAG 1139
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1948 GGTCGTGGGATAGAACTAGAAGGTTTCTATGGGAGTGATCATTGTCCGGTTACACTGGAG 2007
Query 1140 CTTTCGAAGCCATCTTCAGAAATGGAACAGAACCAGGTGTCAAACTAA 1187
||||| |||||||||| ||||| ||||||||||||||| || ||||||
Sbjct 2008 CTTTCAAAGCCATCTTTAGAAACGGAACAGAACCAGGTTTCTAACTAA 2055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53783425940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5