BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48460.1
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485206 jgi|Araly1|485206|fgenesh2_kg.5__1198__AT3G48460.1 1773 0.0
> Ahg485206 jgi|Araly1|485206|fgenesh2_kg.5__1198__AT3G48460.1
Length=1211
Score = 1773 bits (960), Expect = 0.0
Identities = 1125/1206 (93%), Gaps = 5/1206 (0%)
Strand=Plus/Plus
Query 18 AAGCTCAAATTTCAAATCTCACTTCCTTATCACAATGTCTTCCTCTATCTCTCCCCTCCT 77
|||||||||||| ||||||||||||||| || |||||||| ||| ||||||| ||||||
Sbjct 1 AAGCTCAAATTTTAAATCTCACTTCCTT-CCAAAATGTCTTTCTCCATCTCTCTCCTCCT 59
Query 78 CACAACCGCCATCTCCGTCGCAATCCTCCTCTTCTCCACCATCTCCACAGCGGCGACAAT 137
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 60 CACAACCGCCGTCTCCGTCACAATCCTCCTCTTCTCCACCATCTCCACCGCGGCGACAAT 119
Query 138 TCCAAACATCCACCGTCCATTCAACAAAATCTACGCCTTCGGAGATTCTTTCACCGACAC 197
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 TCCAAACATCCACCATCCATTCAACAAAATCTACGCCTTCGGCGATTCTTTCACCGACAC 179
Query 198 CGGAAACTCACGCTCCGGCGAAGGACCAGCCGGATTCGGACACTTGTCAAGTCCTCCATA 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 CGGAAACTCACGCTCCGGCGAAGGACCAGCCGGATTCGGACACTTGTCAAGTCCTCCGTA 239
Query 258 CGGCATGACTTTCTTCCGACGACCAACAAACCGTTACTCCGACGGTCGTCTAACCATCGA 317
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 240 CGGCATGACTTTCTTCCGGCGACCAACAAACCGTTACTCCGACGGTCGTCTCACCATAGA 299
Query 318 CTTCGTGGCAGAGTCAATGAATTTACCGTTTCTGCCACCGTATCTCAGCCTCAAAACCAC 377
||||||||||||||| ||||||||||||||||| |||||||| |||||||| | | | ||
Sbjct 300 CTTCGTGGCAGAGTCGATGAATTTACCGTTTCTACCACCGTACCTCAGCCTGAGATCAAC 359
Query 378 TAACGCTAACGGCACAGCAACGGATACTCACGGCGTTAATTTCGCTGTCTCTGGATCAAC 437
||||| ||||||||| | |||||||||||||||||||||||||| ||||||||| ||||
Sbjct 360 TAACGGTAACGGCACGGTTACGGATACTCACGGCGTTAATTTCGCCGTCTCTGGAGCAAC 419
Query 438 GGTGATTAAACACGCGTTTTTCGTCAAGAACAATCTGTCGCTTGATATGACTCCTCAGTC 497
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 420 GGTGATTAAACACGCGTTTTTCGTGAAGAACAATCTATCGCTTGATATGACTCCTCAGTC 479
Query 498 TATAGAAACAGAGCTTGCTTGGTTTGAGAAGTACTTGGAGACACTTGGAACGAATCAGAA 557
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 480 TATAGAAACAGAGCTTGCTTGGTTCGAGAAGTATTTAGAGACACTTGGAACGAATCAGAA 539
Query 558 GGTTTCGTTGTTTAAAGATTCTCTCTTTTGGATTGGAGAAATTGGAGTGAATGATTATGC 617
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 GGTTTCTTTGTTTAAAGATTCTCTCTTTTGGATTGGAGAAATCGGAGTGAATGATTATGC 599
Query 618 GTATACCCTTGGATCTACTGTGTCAAGTGACACCATTAGAGAACTTAGTATCTCAACTTT 677
||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 600 GTACACTCTTGGATCTACTGTGTCAAGCGATACCATTAGAGAACTTAGTATCTCAACTTT 659
Query 678 TACAAGGTTTTTGGAGACATTGTTGAACAAAGGTGTGAAATATATGTTGGTGCAAGGACA 737
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TACAAGGTTTTTGGAGACATTGTTGAACAAAGGTGTGAAATATATGTTGGTACAAGGACA 719
Query 738 TCCAGCAACTGGATGCTTAACGTTAGCAATGTCGTTGGCCGCAGAAGATGATCGGGACAG 797
||| |||||||||||||| || ||||||||||| | |||||||||||||||||||||||
Sbjct 720 TCCGGCAACTGGATGCTTGACATTAGCAATGTCACTAGCCGCAGAAGATGATCGGGACAG 779
Query 798 TCTAGGATGTGTGCAGAGTGCCAATAACCAAAGTTACACTCACAATCTTGCCCTTCAATC 857
||| |||||||||||||||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 780 TCTTGGATGTGTGCAGAGTGCCAATAACCAGAGTTACACCCACAATCTAGCTCTTCAATC 839
Query 858 CAAACTTAAACAACTTAGGATCAAGTATCCGAGTGCCACAATAGTCTACGCAGATTACTG 917
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 840 CAAACTTAAACAACTTAGGATCAAATATCCGACTGCCACAATAGTCTACGCAGATTACTG 899
Query 918 GAACGCGTACCGTGCGGTGATT-AAACACCCTAGCAAGTACGGTATCACCGAGAAGTTCA 976
|||||| ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||
Sbjct 900 GAACGCATACCGTGCGGTGATTCAAA-ACCCTAGCAAGTACGGCATCAGAGAGAAGTTCA 958
Query 977 AGGCGTGTTGTGGAATTGGAGAGCCGTACAACTTCCAAGTGTTCCAAACGTGTGGGACGG 1036
||||||| ||||||| ||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 959 AGGCGTGCTGTGGAACTGGAGAGCCGTACAACTTCCAGGTGTTCCAGACTTGTGGGACGG 1018
Query 1037 ATGCAGCTACAGTGTGTAAGGACCCGAATCAATACATCAATTGGGACGGAGTCCACTTGA 1096
||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 CTGCAGCTACCGCGTGCAAGGACCCAAATCAATACATCAATTGGGACGGAGTCCACTTGA 1078
Query 1097 CCGAGGCTATGTATAAGGTTATGGCCGATATGTTCCTTGACGGCACTTTCACTCGTCCTA 1156
||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct 1079 CCGAGGCCATGTATAAGGTTATGGCCGATATGTTCCTTGGCGGAACATTCACTCGTCCTA 1138
Query 1157 GATTTAGTGACTTGTTGATCAAGAAACTAAACta-tttatgaatgaattgttttactgat 1215
|||||||| || |||||||||||||||| ||| | ||||| || ||||||||||||||||
Sbjct 1139 GATTTAGTAACCTGTTGATCAAGAAACTGAAC-AGTTTATAAAAGAATTGTTTTACTGAT 1197
Query 1216 ttttta 1221
||||||
Sbjct 1198 TTTTTA 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48987948345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5