BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48720.1 Length=1665 Score E Sequences producing significant alignments: (Bits) Value Ahg485226 jgi|Araly1|485226|fgenesh2_kg.5__1218__AT3G48720.1 2331 0.0 Ahg496545 jgi|Araly1|496545|fgenesh2_kg.8__2361__AT5G63560.1 721 0.0 > Ahg485226 jgi|Araly1|485226|fgenesh2_kg.5__1218__AT3G48720.1 Length=1615 Score = 2331 bits (1262), Expect = 0.0 Identities = 1524/1645 (93%), Gaps = 40/1645 (2%) Strand=Plus/Plus Query 31 TACCTTATCTCTCCAGCTATACACTTGCTACTCAAGATACCGCTAACCCTAATCTCTACT 90 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1 TACCTTATCTCTCCAGCTATACACTTGCTACTCAAGATACCACTAACCCTAATCTCCACT 60 Query 91 AGACCCCC-----TTAGGACTTAAAACCCTATATATCAAGGTCTACTCTCTGTTTTCTCG 145 |||||||| |||| | |||||||||||||||||||| || | |||||| |||||| Sbjct 61 AGACCCCCTTTAATTAGAAGTTAAAACCCTATATATCAAGATCGATTCTCTG-TTTCTCA 119 Query 146 CTTTCTTTATTCGAGCCATTCCATACGTTTTTCGATTTCTTTCATTGAAAACCA-TTGAA 204 ||||||| |||| |||||||||| | ||||||||||||||||||||||||| || ||||| Sbjct 120 CTTTCTTCATTCCAGCCATTCCACAAGTTTTTCGATTTCTTTCATTGAAAA-CACTTGAA 178 Query 205 ATGGTCGCCTCATCTGAGTTCATCGTCACAAGGAAAAACCCTGAACTCATCCCTCCCGTG 264 ||||| ||||||| |||| || |||||||||||||||||||||||||||||||||| ||| Sbjct 179 ATGGTGGCCTCATTTGAGATCTTCGTCACAAGGAAAAACCCTGAACTCATCCCTCCTGTG 238 Query 265 TCCGAAACTCCGAATGGTCATTACTATCTCTCGAATCTCGATCAAAACATCGCCATCATC 324 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TCCGAAACTCCAAAGGGTCATTACTATCTCTCGAATCTCGATCAAAACATCGCCATCATC 298 Query 325 GTGAAAACATTATATTACTACAAATCGGAGTCAAGAACCAACCAAGAATCCTACAATGTG 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 GTGAAAACATTATATTACTACAAATCGGAGTCAAGAACCAACCAAGAATCCTACAATGTG 358 Query 385 ATCAAGAAATCTCTCTCAGAGGTTCTTGTTCATTACTACCCTGTCGCCGGAAGGCTGACG 444 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 359 ATAAAGAAATCTCTCTCTGAGGTTCTTGTTCATTACTACCCTGTCGCCGGAAGGCTGACG 418 Query 445 ATCAGTCCGGAAGGGAAGATCGCCGTCAATTGCACCGGAGAAGGTGTAGTGGTTGTGGAA 504 |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||| Sbjct 419 ATCAGTCCGGAAGGAAAGATCGCCGTGAATTGCACAGGAGAAGGAGTAGTGGTTGTGGAA 478 Query 505 GCTGAGGCTAACTGTGGGATAGATACGATCAAAGAGGCCATCTCAGAGAATAGAATGGAG 564 ||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| Sbjct 479 GCTGAGGCTAACTGTGGGATAGAGACGATCAAAGAGGCCATCTCTGTGAATAGAATGGAG 538 Query 565 ACGCTCGAGAAACTTGTTTACGACGTTCCAGGTGCCCGGAATATTCTTGAGATTCCACCG 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 539 ACGCTCGAGAAACTTGTTTACGACGTTCCAGGTGCCCGGAATATTCTTGAGATTCCGCCG 598 Query 625 GTAGTAGTTCAGGTGACAAATTTCAAATGTGGGGGTTTTGTCCTAGGACTAGGCATGAGC 684 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 GTAGTAGCTCAGGTGACAAATTTCAAATGTGGGGGTTTTGTCCTAGGACTAGGCATGAGC 658 Query 685 CACAACATGTTCGATGGAGTCGCCGCTGCGGAGTTCCTCAACTCGTGGTGCGAGATGGCC 744 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 CACAACATGTTCGATGGAGTCGCCGCTGCGGAGTTCCTCAACTCGTGGTGCGAGATGGCT 718 Query 745 AAGGGTCTTCCTTTATCCGTCCCACCATTCTTGGACCGTACGATTCTCCGGTCACGAAAC 804 ||||| ||||||||||||||||| || |||||||||||||||||||||||| |||||||| Sbjct 719 AAGGGCCTTCCTTTATCCGTCCCGCCTTTCTTGGACCGTACGATTCTCCGGCCACGAAAC 778 Query 805 CCTCCCAAAATCGAGTTCCCACACAATGAATTCGACGAAATTGAAGATATTTCCGACACC 864 |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct 779 CCTCCCAAAATCGAGTTCCCACACAACGAATTCGACGAAATTGAAGACATCTCCGACACC 838 Query 865 GGAAAAATCTACGATGAAGAAAAACTCATCTACAAATCATTTCTTTTCGAACCCGAAAAG 924 ||||| |||||||||||||||||||| ||||||||||||| || ||||||||||||||| Sbjct 839 CGAAAACTCTACGATGAAGAAAAACTCGTCTACAAATCATTCCTCTTCGAACCCGAAAAG 898 Query 925 CTTGAGAAGCTCAAGATCATGGC-GATTGAAGAAAATAACAATAATAAGGTATCAACATT 983 |||||||||||||||| |||||| | ||||||||| ||| |||| ||||||||||||||| Sbjct 899 CTTGAGAAGCTCAAGACCATGGCAG-TTGAAGAAAGTAATAATAGTAAGGTATCAACATT 957 Query 984 TCAAGCCTTAACCGGGTTTCTTTGGAAATCAAGATGCGAAGCTCTACGGTTTAAACCGGA 1043 |||||||||||||||||||||||||||||||||||| || |||||||||| |||||| || Sbjct 958 TCAAGCCTTAACCGGGTTTCTTTGGAAATCAAGATGTGAGGCTCTACGGTATAAACCAGA 1017 Query 1044 CCAACGGGTTAAGCTTCTGTTTGCGGCGGATGGACGGTCAAGATTCATCCCACGTCTCCC 1103 |||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| Sbjct 1018 CCAACGGGTTAAACTTCTGTTCGCGGCTGATGGACGGTCTAGATTCATCCCACGTCTCCC 1077 Query 1104 GCAAGGATATTGCGGGAACGGGATTGTGTTAACCGGTTTGGTGACATCATCGGGAGAATT 1163 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1078 ACAAGGATATTGCGGGAACGGGATTGTGTTAACCGGTTTGGTGACATCATCAGGAGAATT 1137 Query 1164 AGTTGGGAACCCTCTTTCTCACTCGGTGGGTTTGGTCAAGAGACTGGTGGAGCTGGTTAC 1223 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 1138 AGTTGGGAACCCTCTTTCTCACTCGGTGGGTTTGGTCAAGAGACTGGTCGAGTTGGTTAC 1197 Query 1224 GGACGGCTTCATGCGGTCGGCTATGGACTACTTCGAGGTGAACCGGACACGGCCGAGTAT 1283 ||||| |||||| ||||||||||||| ||| |||||||||||||||| ||||||||||| Sbjct 1198 AGACGGTTTCATGAGGTCGGCTATGGATTACGTCGAGGTGAACCGGACCCGGCCGAGTAT 1257 Query 1284 GAACGCGACACTTTTGATTACATCCTGGTCAAAATTGACATTGCATAAACTGGATTTCGG 1343 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 GAATGCGACGCTTTTGATTACATCCTGGTCAAAATTGACATTGCATAAACTGGATTTCGG 1317 Query 1344 TTGGGGAGAACCGGTTTTCTCTGGACCGGTTGGTTTACCAGGGAGGGAAGTGATCTTGTT 1403 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1318 TTGGGGAGAACCGGTTTTCTCTGGACCGGTTGGTTTACCAGGGAGGGAAGTGATTTTGTT 1377 Query 1404 CTTACCAAGTGGTGATGATATGAAGAGTATCAATGTGTTTCTTGGCCTTCCTACTTCAGC 1463 |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1378 CTTACCAAGTGGAAATGACATGAAGAGTATCAATGTGTTTCTTGGCCTTCCTGCTTCAGC 1437 Query 1464 TATGGAAGTGTTTGAAGAGCTTATGAAGA---TCTGAAAAAGAACATACATTTTCATAAT 1520 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1438 TATGGAAGTGTTTGAAGAGCTTATGAAGAAGATCTGAAAAAGAACATACATTTTCATAAT 1497 Query 1521 CAAATTATGATATATTCTACCAAATTATAAGCAAAGGAAAATTATAATCTAGTCATTATT 1580 ||||||||||| |||| | | |||| | | | | || | | | ||| Sbjct 1498 CAAATTATGATTTATT-T------T-ATAATC---------T-A-A-TC-A-T--T-ATT 1532 Query 1581 TATACATGTTATATTTGAATTCACGTTTGTATCCATTACAAAAATTTATGTAATTCGCAG 1640 ||||||||| | ||||||||| |||||||||| |||||||||| |||||||||||||| Sbjct 1533 TATACATGTAAG-TTTGAATTCTCGTTTGTATCAATTACAAAAAATTATGTAATTCGCAT 1591 Query 1641 AAAATATATATATGTCAAATTAAGT 1665 |||| |||||||||||||| ||||| Sbjct 1592 AAAA-ATATATATGTCAAAGTAAGT 1615 > Ahg496545 jgi|Araly1|496545|fgenesh2_kg.8__2361__AT5G63560.1 Length=1494 Score = 721 bits (390), Expect = 0.0 Identities = 1028/1328 (77%), Gaps = 76/1328 (6%) Strand=Plus/Plus Query 203 AAATGGTCGCCTCA-TCTGAGTTCATCGTCACAAGGAAAA-ACCCTGAACTCATCCCTCC 260 |||||| || |||| || ||| ||||||| || ||||| | |||| ||| || |||| Sbjct 35 AAATGGCCGACTCATTC-GAGCTCATCGTAAC-CCGAAAAGAACCTGTTCTCGTCTCTCC 92 Query 261 CGTGTCCGAAACTCCGAATGGTCAT-TACTATCTCTCGAATCTCGATCAAAACATCGCCA 319 | |||| |||||| || |||| | | ||||| || |||||||||||||||||||||| Sbjct 93 AGCCTCCGGAACTCCAAAAGGTC-TCCATTATCTATCAAATCTCGATCAAAACATCGCCA 151 Query 320 TCATCGTGAAAACATTATATTACTACAAATCGGAGTCAAGAACCAACCAAGAATCCTAC- 378 ||||||| |||||||| || |||| |||||| | |||||| ||||| | ||||||| Sbjct 152 TCATCGTCAAAACATTCTACTACTTCAAATCAAACTCAAGATCCAACGAGGAATCCTGTG 211 Query 379 AATGTGATCAAGAAATCTCTCTCAGAGGTTCTTGTTCATTACTACCCTG-TCGCCGGAAG 437 || || |||||||| || ||||| |||||||||||||| ||||| |||| | ||||| || Sbjct 212 AA-GTCATCAAGAAGTCACTCTCCGAGGTTCTTGTTCACTACTATCCTGCT-GCCGGGAG 269 Query 438 GCTGACGATCAGTCCGGAAGGGAAGATCGCCGTCAATTGCACCGGAGAAGGTGTAGTGGT 497 || |||||||| || ||||| ||||| || || |||||||||||||||| || || || Sbjct 270 ACTCACGATCAGCCCCGAAGGCAAGATTGCTGTGGATTGCACCGGAGAAGGAGTTGTCGT 329 Query 498 TGTGGAAGCTGAGGCTAACTGTGGGATAGATACGATCAAAGA-GGCCATCTCAGAGAAT- 555 |||||||||||||| || ||||||||||| | |||||| || ||| || || |||| | Sbjct 330 GGTGGAAGCTGAGGCCAATTGTGGGATAGAGAAGATCAA-GAAGGCTATATCGGAGATTG 388 Query 556 AG-AAT-GGAGACGCTCGAGAAA-CTTGTTTACGACGTTCCAGGTGCCCGGAATATTCTT 612 | || |||||| || || ||| || |||| |||||||| ||||| |||||||||||| Sbjct 389 ATCAACCGGAGACTCTTGA-AAAGCTGGTTTTTGACGTTCCCGGTGCTCGGAATATTCTT 447 Query 613 GAGATTCCACCGGTAGTAGTTCAGGTGACAAATTTCAAATGTGGGGGTTTTGTCCTAGGA 672 |||||||| || || || |||||||||||||||||||||||||| || || || |||||| Sbjct 448 GAGATTCCGCCAGTGGTTGTTCAGGTGACAAATTTCAAATGTGGAGGATTCGTGCTAGGA 507 Query 673 CTAGGCATGAGCCACAACATGTTCGATGG-AGTCGCCGCTGCGGAGTTCCTCAACTCGTG 731 |||||||||| |||||| ||||||||||| | | || ||| ||||||||||||||| || Sbjct 508 CTAGGCATGAACCACAATATGTTCGATGGTATT-GCAGCTATGGAGTTCCTCAACTCTTG 566 Query 732 GTGC-GAGATGGC-CAAGGGTCTTCCTTTATCCGTCCCACCATTCTTGGACCGTACGA-T 788 | || |||| ||| | || || ||| | ||| | ||||| ||||||||||| || | | Sbjct 567 G-GCCGAGACGGCTCGTGGC-CTCCCTCTCTCCCTTCCACCTTTCTTGGACCGCAC-ACT 623 Query 789 TCTCCGGTCACGAAACCCTCCCAAAATCGAGTTCCCACACAATGAATTCGACGAAATTGA 848 ||| || |||||| ||| || || ||||| ||||||||||| || || || || | || Sbjct 624 TCTACGACCACGAATCCCACCGAAGATCGAATTCCCACACAACGAGTTTGAGGACCTCGA 683 Query 849 AGATATTTCCGACACCGGAAAAATCTACGATGAAGAAAAACTCATCTACAAATCATTTCT 908 ||| || |||| |||||||||| ||||| || || |||||| |||||||||| || || Sbjct 684 AGACATCTCCGGCACCGGAAAACTCTACTCCGACGAGAAACTCGTCTACAAATCCTTCCT 743 Query 909 TTTCGAACCCGAAAAGCTTGAGAAGCTCAAGATCATGGCGATTGAAGAAAATAACAATAA 968 |||| ||||||||| || |||| ||||||||||||||| | || || ||| | Sbjct 744 CTTCGGACCCGAAAAACTCGAGAGGCTCAAGATCATGGC-A--GA-GA------CAA-AG 792 Query 969 TAAGGTATCAACATTTCAAGCCTTAACCGGGTTTCTTTGGAAATCAAGATG-CGAAGCTC 1027 | | | || |||||| || |||| || ||||| |||| | | | || | |||| | Sbjct 793 TCC---A-CGACTTTTCAAACCCTAACTGGATTTCTATGGAGAGCTCGTTGTC-AAGC-C 846 Query 1028 T-ACGGTTTAAACCGGACCAACGGGTTAAGCTTCTGTTTGCGGCGGATGGACGGTCAAGA 1086 | | || ||||||| || |||||| | || ||||| ||||| || ||||||||||| ||| Sbjct 847 TTAGGGCTTAAACCAGATCAACGGATCAAACTTCTCTTTGCTGCAGATGGACGGTCGAGA 906 Query 1087 TTCATCCCACGT--CTCCCGCAAGGATATTGCGGGAACGGGATTGTGTTAACCGGTTTG- 1143 || |||| || || || ||||||||| ||| |||||||||||||| || || | Sbjct 907 TTT-TCCC-CGGAACTTCCTAAAGGATATTCCGGTAACGGGATTGTGTTCACTTATT-GC 963 Query 1144 GTGACATCATCGGGAGAATT-AGTTGGGAACCCTCTTTCTCACTCGGTGGGTTTGGTCAA 1202 || ||| | | || ||| | | || |||||||||||||| ||||||||||||||||| Sbjct 964 GTTACAACGGCTGGTGAAGTGACTTTA-AACCCTCTTTCTCATTCGGTGGGTTTGGTCAA 1022 Query 1203 GAGA-CTGGTGGAGCTGGTTA-CGGACGGCTTCATGCGGTCGGCTATGGACTACTTCGAG 1260 ||| | | || | |||| | || |||| |||||| |||| || || || ||||| ||| Sbjct 1023 AAGAGCCGTTGAAA-TGGTCAACG-ACGGTTTCATGAGGTCAGCGATTGATTACTTTGAG 1080 Query 1261 GTGAAC-CG-GAC-ACGGCCGAGTATGAACG-CGACACTTTTGATTACATCCTGGTCAAA 1316 |||| | || | | | |||||||| | |||| | |||||| |||| || || ||| |||| Sbjct 1081 GTGA-CTCGAG-CTA-GGCCGAGTCT-AACGGCAACACTTCTGATCACGTCGTGGGCAAA 1136 Query 1317 ATTGACATTGCATA--AACTGGATTTCGGTTGGGGAGAACCGGTTTTCTCTGGACCGGTT 1374 | || | || |||| || ||||||||||||||| ||||||||| | ||||||||||| Sbjct 1137 ACTGTCGTTTCATACTAA--GGATTTCGGTTGGGGTGAACCGGTTGTGTCTGGACCGGTC 1194 Query 1375 GGTTTACCAGGGAGGGAAGTGAT-CTTGTT-CTTACCAAGTGGT-GATGATATGAAGAGT 1431 |||||||| | || ||||||||| || ||| || ||| |||| | ||| | ||||||| Sbjct 1195 GGTTTACCTGAGAAGGAAGTGATTCT-GTTTCTG-CCATGTGGCAG-TGACACGAAGAGT 1251 Query 1432 ATCAATGTGTTTCTTGGCCTTCCTA-CTTCAGCTATGGAAGTGTTTGAAGAGCTTATGAA 1490 ||||||||| | ||||| |||||| || | |||||| ||||||| ||| ||||||| | Sbjct 1252 ATCAATGTGCTGCTTGGACTTCCTGGCT-CGGCTATGAAAGTGTTCCAAGGGCTTATGGA 1310 Query 1491 GATCTGAA 1498 || |||| Sbjct 1311 TATATGAA 1318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62429911555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5