BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48740.1
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485228 jgi|Araly1|485228|fgenesh2_kg.5__1220__AT3G48740.1 1877 0.0
Ahg484952 jgi|Araly1|484952|fgenesh2_kg.5__944__AT5G23660.1 739 0.0
> Ahg485228 jgi|Araly1|485228|fgenesh2_kg.5__1220__AT3G48740.1
Length=1203
Score = 1877 bits (1016), Expect = 0.0
Identities = 1146/1206 (95%), Gaps = 20/1206 (2%)
Strand=Plus/Plus
Query 1 GCTCGTGCCATTAGCTTTTACATTAAGAGAAAACACTTGCAAAACTAAGTGCTATCTCTC 60
|||||||||| ||||||||| ||||||||| ||||||| |||| ||||||||||||||||
Sbjct 1 GCTCGTGCCAATAGCTTTTATATTAAGAGATAACACTTACAAATCTAAGTGCTATCTCTC 60
Query 61 TTCTTCTTCCTTCT------CC-TAACAACTTATATACCATGAGTCTCTTCAACACTGAA 113
||||||||||| || || |||||||||||||| ||||||||||||||||||||||
Sbjct 61 TTCTTCTTCCTCCTAAAAACCCTTAACAACTTATATATCATGAGTCTCTTCAACACTGAA 120
Query 114 AACACATGGGCCTTTGTCTTTGGCTTGCTCGGCAACCTTATCTCCTTT-GCCGTGTTCCT 172
|||||||||||||||||||||||||||||||| || || |||| |||| |||||||||||
Sbjct 121 AACACATGGGCCTTTGTCTTTGGCTTGCTCGGAAATCTCATCT-CTTTCGCCGTGTTCCT 179
Query 173 ATCTCCTGTGCCAACGTTCTATAGGATTTGGAAGAAGAAGACAACAGAAGGGTTTCAGTC 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 CTCTCCTGTGCCAACGTTCTATAGGATTTGGAAGAAGAAGACAACAGAAGGGTTTCAATC 239
Query 233 TATTCCTTATGTTGTGGCGCTCTTCAGTGCGACGCTTTGGCTTTACTATGCGACACAGAA 292
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TATCCCTTATGTTGTGGCGCTCTTCAGTGCGACGCTTTGGCTTTACTATGCGACACAGAA 299
Query 293 GAAAGATGTCTTCCTCCTCGTAACCATTAACGCCTTTGGTTGCTTCATCGAAACCATCTA 352
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 GAAAGATGTCTTCCTCCTCGTAACCATTAACGCCTTTGGATGCTTCATCGAAACCATCTA 359
Query 353 CATCTCTATGTTCCTTGCCTACGCTCCCAAGCCAGCTCGGATGTTGACAGTGAAGATGCT 412
|||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| | |
Sbjct 360 CATCGCTATGTTCCTTGCCTACGCTACCAAGCCAGCCCGGATGTTGACAGTGAAGACGTT 419
Query 413 ACTTCTTATGAACTTTGGAGGATTCTGTGCGATTCTCCTTCTTTGCCAATTCTTGGTAAA 472
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 ACTTCTTATGAACTTTGGAGGATTCTGTGTGATTCTCCTTCTTTGCCAATTCTTGGTAAA 479
Query 473 AGGAGCCACACGTGCTAAGATTATCGGAGGAATCTGTGTCGGATTCTCTGTTTGTGTTTT 532
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 AGGAGCCACACGTGCTAAGATTATCGGAGGAATCTGTGTTGGATTCTCTGTTTGTGTTTT 539
Query 533 CGCTGCTCCTCTAAGCATAATCAGGACGGTAATAAAGACAAGAAGTGTGGAGTACATGCC 592
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 CGCTGCTCCTCTAAGCATAATCAGGACGGTAATAAAGACAAGGAGTGTGGAGTACATGCC 599
Query 593 CTTTAGCTTATCCTTAACCCTTACCATCAGTGCTGTCATATGGCTCCTTTATGGTCTTGC 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTTAGCTTATCCTTAACCCTTACCATCAGTGCTGTCATATGGCTCCTTTATGGTCTTGC 659
Query 653 TCTCAAGGACATCTATGTTGCTTTCCCGAATGTGCTTGGTTTTGCTCTCGGTGCACTCCA 712
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 660 TCTCAAGGACATCTATGTTGCCTTCCCGAATGTGATTGGTTTTGCTCTCGGTGCACTCCA 719
Query 713 AATGATACTCTACGTTGTCTACAAATACTGTAAAACGTCGCCGCATCTAGGAGAGAAAGA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AATGATACTCTACGTTGTCTACAAATACTGTAAAACGTCGCCGCATCTAGGAGAGAAAGA 779
Query 773 AGTCGAAGCTGCTAAGTTACCGGAGGTGAGCCTCGATATGTTGAAGCTAGGCACAGTTTC 832
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 780 AGTCGAAGCTGCTAAGTTACCGGAGGTGAGCCTCGATATGCTGAAGCTGGGCACAGTTTC 839
Query 833 ATCCCCTGAGCCAATCTCAGTGGTTCGTCAAGCGAACAAGTGTACCTGCGGAAATGATCG 892
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 840 ATCCCCTGAGCCAATCTCAGTCGTTCGTCAAGCGAACAAGTGTACCTGCGGCAATGATCG 899
Query 893 AAGGGCTGAGATTGAAGATGGACAAACCCCTAAACATGGCAAGCAGTCCTCTTCCGCAGC 952
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 900 AAGGGCTGAGATTGAAGATGGACAAACCCCTAAAAACGGCAAGCAGTCCTCTTCTGCAGC 959
Query 953 AGCTACATGAATAAAAATACGTT-A--ATG---T-T-GACTTTACCCCAACTTGATATAC 1004
||||||||||||||||||||||| | ||| | | |||||||||||||||||||||||
Sbjct 960 AGCTACATGAATAAAAATACGTTGACCATGGAATGTTGACTTTACCCCAACTTGATATAC 1019
Query 1005 CAA-CCACCACGTGTACCCCGTTACGCTGTCGTATTTTTCTGAGTTTATCAAGTGTGCGA 1063
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1020 CAAACCACCACGTGTACCC-GTTACGCTGTCGTATTTTTCTGAGTTTATCAAGTGTGTGA 1078
Query 1064 AGTAGAGGATTAATTTTCCGGAGTTAGTTTCTCTACTTCTTTATAAAAATTTGTGTAATT 1123
||||||| |||||||||||||||||| |||| |||||||||| |||| ||| |||||||
Sbjct 1079 AGTAGAGAATTAATTTTCCGGAGTTAATTTCACTACTTCTTTTTAAAT-TTTATGTAATT 1137
Query 1124 ATCTATTGGGGATAATGTATATTTCCTATTTTCTGATTTAACGAAAACTATTTAAAATAT 1183
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATCTACTGGGGATCATGTATATTTCCTATTTTCTGATTTAACGAAAACTATTTAAAATAT 1197
Query 1184 CCATCA 1189
||||||
Sbjct 1198 CCATCA 1203
> Ahg484952 jgi|Araly1|484952|fgenesh2_kg.5__944__AT5G23660.1
Length=1247
Score = 739 bits (400), Expect = 0.0
Identities = 690/829 (83%), Gaps = 23/829 (3%)
Strand=Plus/Plus
Query 98 TCTCTTCAACACTGAAAACACATGGGCCTTTGTCTTT-GGCTTGCTCGGCAACCTTATCT 156
||||||| ||||| | ||||||||||||||||| ||| ||||||||||| ||||| || |
Sbjct 111 TCTCTTCGACACTCATAACACATGGGCCTTTGT-TTTCGGCTTGCTCGGAAACCTCATTT 169
Query 157 CCTTTGCCGTGTTCCTATCTCCTGTGCCAACGTTCTATAGGATTTGGAAGAAGAAGACAA 216
||||||| || ||||| ||||| |||||||||||||| |||||||| |||||||| || |
Sbjct 170 CCTTTGCTGTTTTCCTCTCTCCCGTGCCAACGTTCTACAGGATTTGTAAGAAGAAAACCA 229
Query 217 CAGAAGGGTTTCAGTCTATTCCTTATGTTGTGGCGCTCTTCAGTGCGACGCTTTGGCTTT 276
||||||| ||||| |||||||| || | |||||||| ||||| |||| ||||||||| |
Sbjct 230 CAGAAGGATTTCAATCTATTCCCTACCTGGTGGCGCTATTCAGCGCGATGCTTTGGCTCT 289
Query 277 ACTATGCGACACAGAAGAAAGATGTCTTCCTCCTCGTAACCATTAAC-GCCTTTGGTTGC 335
|||| || || |||||||||||||||||||| ||||| ||||| ||| | |||||||||
Sbjct 290 ACTACGCTACTCAGAAGAAAGATGTCTTCCTTCTCGTCACCATCAACAG-CTTTGGTTGT 348
Query 336 TTCATCGAAACCATCTACATCTCTATGTTCCTTGCCTACGC-TCCCAAGCCAGCTCGGAT 394
||||| |||||||| |||||||| || ||| |||||| ||| | ||||| |||||| ||
Sbjct 349 TTCATTGAAACCATATACATCTCCATCTTCGTTGCCTTCGCAT-CCAAGAAAGCTCGAAT 407
Query 395 GTTGACAGTGAAGATGCTACTT-CTTATGAACTTTGGAGGATTCTGTGCGATTCTCCTTC 453
| | || |||||| || | || || ||||||||||||||||||||| ||||||||| |
Sbjct 408 GCTCACGGTGAAGCTG-TTGTTGCTAATGAACTTTGGAGGATTCTGTTTGATTCTCCTCC 466
Query 454 TTTGCCAATTCTTGGTAAAAGGAGCCACACGTGCTAAGATTATCGGAGGAATCTGTGTCG 513
| ||||||||||||| |||||| |||||||||| ||||| || ||||||||||||||||
Sbjct 467 TCTGCCAATTCTTGGCCAAAGGAACCACACGTGCCAAGATCATTGGAGGAATCTGTGTCG 526
Query 514 GATTCTCTGTTTGTGTTTTCGCTGCTCCTCTAAGCATAATCAGGACGGTAATAAAGAC-A 572
|||||||||| || ||||||||||| || || ||||| ||||| ||||| |||||||| |
Sbjct 527 GATTCTCTGTCTGCGTTTTCGCTGCGCCGCTTAGCATTATCAGAACGGTGATAAAGACGA 586
Query 573 AGAAGTGTGGAGTACATGCCCTTTAGCTTATCCTTAACCCTTACCATCAGTGCTGTCATA 632
| |||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||
Sbjct 587 A-AAGTGTTGAGTACATGCCGTTTAGCTTATCCTTGACTCTTACCATCAGTGCGGTCATA 645
Query 633 TGGCTCCTTTATGGTCTTGCTCTCAAGGACATCTATGTTGCTTTCCCGAATGTGCTTGGT 692
||||||||||||||||||||||| ||||| ||||||||||| ||||| || ||| ||||
Sbjct 646 TGGCTCCTTTATGGTCTTGCTCTTAAGGATATCTATGTTGCCTTCCCTAACGTGATTGGG 705
Query 693 TTTGCTCTCGGTGCACTCCAAATGATACTCTACGTTGTCTACAAATACTGTAAAACGTCG 752
|||| |||||||||||| ||||||||||| ||||| || ||||||||||| |||||| ||
Sbjct 706 TTTGTTCTCGGTGCACTTCAAATGATACTTTACGTGGTTTACAAATACTGCAAAACGCCG 765
Query 753 CCGCATCTAGGA-GAGAAAGAAGTCGAAGCTGCTAAGTTACCGGAGGTGAGCCTCGATAT 811
|| || | || || |||||| ||||||| || || || ||||| |||||| | |||||
Sbjct 766 TCGGATTT-GGTTGAAAAAGAACTCGAAGCCGCGAAATTGCCGGAAGTGAGCATTGATAT 824
Query 812 GTTGAAGCTAGGCACAGTTTCATCCCCTGAGCCA--ATC--TCA--GTGGTTCG-TCAAG 864
| ||||| |||| ||| | |||| ||||| ||| | | ||| || || || || |
Sbjct 825 GCTGAAGTTAGGTACACTGACATCTCCTGAACCAGCAGCGATCACAGTCGTCCGATCC-G 883
Query 865 CGAACAAGTGTACCTGCGGAAATGATCGAAGGGCTGAGATTGAAGATGG 913
||||| ||||| ||| || ||||||| ||||||||||||| ||||
Sbjct 884 TGAACACGTGTAACTGT--AAC-GATCGAAAGGCTGAGATTGAAAATGG 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48987948345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5