BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48850.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937652 jgi|Araly1|937652|scaffold_501843.1 1609 0.0
> Ahg937652 jgi|Araly1|937652|scaffold_501843.1
Length=1137
Score = 1609 bits (871), Expect = 0.0
Identities = 1061/1149 (92%), Gaps = 27/1149 (2%)
Strand=Plus/Plus
Query 59 TTTCTCATCTCCT-CTCTCGAAATGTCTGACTCAAGCAGATCGCTGATCCCGAGCTTT-C 116
|||||| ||| || || | ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1 TTTCTCTTCTTCTCCT-TGGAAATGTCTGACTCAAGCAGATCGCTGATCCCGAG-TTTCC 58
Query 117 TCTACTCGTCCG---ATCATCGTCTTTTTCAG--G-C-GA--CGACCATGA--GT-ACTC 164
|||||||||||| |||||||||| |||||| | | || | ||| || | ||||
Sbjct 59 TCTACTCGTCCGATCATCATCGTCTGTTTCAGTCGCCGGAGCCTTCCACGACCATGACTC 118
Query 165 ACCTTAAATCACAGCCGTTGATTTCTCCGACTAATTCTTCAGTCTCATCCAACGGTACCA 224
| ||||||||| |||||||||| ||||| | |||| |||||| || |||||||
Sbjct 119 ATGTTAAATCACGGCCGTTGATTCCTCCG----A--CTTC---CTCATCTAATGGTACCA 169
Query 225 GTTTCGCCATCGCGACGCCGAATGAAAAAGTGGAAATGTACTCGCCGGCGTATTTCGCGG 284
|||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||
Sbjct 170 GTTTCGCCATCGCGACGCCGAACGAAAAAGTGGAAATGTACTCGCCAGCATACTTCGCGG 229
Query 285 CGTGTACGGTCGCCGGGATGCTGAGCTGCGGTATCACCCACACGGCGATTACGCCACTTG 344
|||||||||||||||||||| || | ||||||||||| ||||||||||||||||| || |
Sbjct 230 CGTGTACGGTCGCCGGGATGTTGTGTTGCGGTATCACACACACGGCGATTACGCCTCTCG 289
Query 345 ATGTCATCAAATGCAACATGCAGATTGATCCACTGAAGTACAAGAACATAACTTCAGCTT 404
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 290 ATGTCATCAAATGCAACATGCAGATTGATCCACTCAAGTACAAGAACATAACTTCTGCTT 349
Query 405 TCAAGACAACAATCAAAGAGCAAGGGCTTAAGGGTTTCACCAGAGGCTGGTCACCAACGC 464
||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| |
Sbjct 350 TCAAGACAACAATCAAAGAACAAGGGCTCAAGGGATTCACTAGAGGCTGGTCACCAACAC 409
Query 465 TTCTTGGTTACAGTGCCCAAGGAGCTTTTAAATACGGTCTCTATGAGTACGCCAAGAAAT 524
|||| || ||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 410 TTCTCGGGTACAGTGCCCAGGGAGCTTTTAAATACGGTCTCTATGAATATTCCAAGAAAT 469
Query 525 ACTACTCAGACATTGTTGGACCAGAATACGCAGCTAAATACAAGACCTTGATTTACCTCG 584
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 470 ACTACTCAGACATTGTTGGACCAGAATACGCAGCCAAATACAAGACCTTGATTTACCTTG 529
Query 585 CTGGCTCAGCCTCTGCAGAAATCGTCGCTGATGTGGCTCTTTGTCCAATGGAAGCTGTCA 644
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CTGGCTCGGCCTCTGCAGAAATCGTCGCTGATGTGGCTCTTTGTCCAATGGAAGCTGTCA 589
Query 645 AAGTCAGGGTCCAGACTCAGCCTGGTTTCGCCCGCGGTTTATCTGATGGTTTACCAAAGA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 AAGTCAGGGTCCAGACTCAGCCTGGTTTCGCCCGCGGTTTATCTGATGGTTTACCAAAGA 649
Query 705 TCATCAAATCCGAAGGCTTCCGCGGGTTACACAAAGGACTTGTTCCTCTCTGGGGACGCC 764
|||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 650 TCATCAAATCCGAAGGCTTCCGCGGGCTATACAAAGGCCTTGTTCCTCTCTGGGGACGCC 709
Query 765 AGATTCCATATACGATGATGAAATTTGCTACTTTTGAAAACACTGTGGAGCTCATATACA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AGATTCCATATACGATGATGAAATTTGCTACTTTTGAAAACACTGTGGAGCTCATATACA 769
Query 825 AGAAAGTGATGCCTACCCCAAAAGAAGAGTGCTCAAAGCCAGTTCAGCTCGGAGTTAGCT 884
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 770 AAAAAGTGATGCCTACCCCAAAAGAAGAGTGCTCAAAGCCAGTTCAGCTCGGAGTAAGCT 829
Query 885 TTGCAGGTGGATACATTGCTGGAATATTCTGCGCCATCATCTCACATCCTGCAGATAATT 944
||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |
Sbjct 830 TTGCAGGTGGATACATTGCTGGAATTTTCTGTGCCGTCATCTCACATCCTGCAGATAACT 889
Query 945 TGGTGTCTTTCCTCAATAACTCTAAAGGAGCAACCGTTGCTGATGCAGTAAAGAGGCTAG 1004
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 890 TAGTCTCTTTCCTCAATAACTCTAAAGGAGCAACCGTTGCTGATGCGGTAAAGAGGCTAG 949
Query 1005 GGTTATGGGGTATGTTAACCCGTGGCCTTCCTCTTCGCATTTTCATGATAGGAACACTCA 1064
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 950 GATTATGGGGTATGTTTACCCGCGGCCTTCCTCTTCGCATTTTCATGATAGGAACACTCA 1009
Query 1065 CTGGAGCGCAGTGGGTTATCTATGATGCTGTCAAAGTTTTAGCTGGATTGCCAACCACTG 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CTGGAGCGCAGTGGGTTATCTATGATGCTGTCAAAGTTTTAGCTGGATTGCCAACCACTG 1069
Query 1125 GTGGTGCTT-CTCCAGCTACTGCGCTTGCTCCATCTGTAAGTGCATAAAATTACAAGAAT 1183
||||| ||| |||||||||| || ||||| |||||||||||||||||||||||||| |
Sbjct 1070 GTGGT-CTTTCTCCAGCTACAACGATTGCTTCATCTGTAAGTGCATAAAATTACAAGGAC 1128
Query 1184 ATTCCTCGC 1192
|||||||||
Sbjct 1129 ATTCCTCGC 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5