BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48990.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937667 jgi|Araly1|937667|scaffold_501858.1 2494 0.0
> Ahg937667 jgi|Araly1|937667|scaffold_501858.1
Length=1585
Score = 2494 bits (1350), Expect = 0.0
Identities = 1499/1572 (95%), Gaps = 6/1572 (0%)
Strand=Plus/Plus
Query 70 TCTCTCCGACG---TAACCATGGATAGCGATACTCTCTCAGGATTATTGGAAAACGTCGC 126
|||||| |||| ||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 2 TCTCTCAGACGTAATAACCATGGATAGCGATACTCTCACCGGATTGTTGGAAAACGTCGC 61
Query 127 CAAAAAATTCCCCGATCGCCGAGCTCTCTCCGTTTCTGGAAAATTCAATCTCACTCACGC 186
|| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 62 CAGACAATTCCCCGATCGCCGAGCTCTCTCCGTTTCTGGAAAATTCGATCTCACTCACGC 121
Query 187 GCGTCTTCACGATCTAATCGAACGCGCCGCTTCACGCCTTGTCTCCGACGCTGGAATCAA 246
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 122 GCGTCTTCACGATCTAATCGAACGCGCCGCTTCACGCCTTGTCTCCGCCGCTGGCATCAA 181
Query 247 ACCCGGCGATGTCGTTGCTCTCACCTTCCCTAACACCGTCGAGTTTGTTATAATGTTTTT 306
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ACCCGGCGATGTCGTCGCTCTCACCTTCCCTAACACCGTCGAGTTTGTTATAATGTTTTT 241
Query 307 AGCGGTGATAAGAGCTAGAGCCACGGCGGCGCCGTTGAACGCAGCGTACACGGCGGAGGA 366
||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 242 AGCGGTGATAAGAGCTAGAGCGACGGCGGCGCCGTTAAACGCAGCGTATACGGCGGAGGA 301
Query 367 ATTTGAGTTTTACCTCTCCGATTCAGATTCAAAGCTATTGTTAACCTCTAAAGAAGGAAA 426
|||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||
Sbjct 302 ATTTGAGTTTTACCTCTCTGATTCAGATTCAAAGCTATTATTAACCGCTAAAGAAGGAAA 361
Query 427 CGCACCGGCTCAAGAAGCAGCTTCAAAGCTGAAAATCTCTCACGTCACCGCTACGCTGCT 486
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 362 CGCACCGGCTCAAGAAGCAGCTTCAAAGCTGAAAATCACTCACGTCACCGCTACGCTGCT 421
Query 487 TGACGCTGGCTCGGACCTTG-TACTATCCGTTGCGGATTCAGATTCCGTCGTTGACTCAG 545
|||||||||||||||||||| | || |||||||||||||| || || |||||||||||||
Sbjct 422 TGACGCTGGCTCGGACCTTGCT-CTGTCCGTTGCGGATTCTGACTCGGTCGTTGACTCAG 480
Query 546 CGACGGAACTCGTTAATCACCCGGACGACGGTGCTCTCTTCCTCCACACTTCTGGCACTA 605
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 481 CGACGGAACTCGTTAATCACCCGGACGATGGTGCTCTCTTCCTCCACACTTCTGGCACGA 540
Query 606 CGAGCCGTCCAAAGGGTGTACCGCTTACGCAGCTCAATCTAGCTTCATCCGTCAAGAACA 665
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 541 CGAGCCGTCCAAAGGGTGTACCGCTTACGCAGCTCAATCTAGTTTCATCCGTCAAGAACA 600
Query 666 TTAAAGCTGTGTACAAGCTTACTGAGTCTGATTCTACGGTGATTGTTCTCCCTCTGTTCC 725
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 601 TTAAAGCTGTTTACAAGCTGACCGAGTCTGATTCTACGGTGATTGTTCTCCCTCTGTTCC 660
Query 726 ATGTTCATGGATTGTTAGCTGGGTTGCTTAGCTCGCTTGGAGCTGGTGCTGCTGTAACTC 785
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 661 ATGTTCATGGATTGTTAGCTGGTTTGCTTAGCTCGCTTGGAGCTGGTGCGGCTGTGACTC 720
Query 786 TTCCAGCTGCTGGTAGATTCTCAGCAACAACATTTTGGCCAGATATGAAGAAGTATAACG 845
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 721 TTCCAGCTGCTGGTAGATTCTCAGCAACAACGTTTTGGCCAGACATGAAGAAGTATAACG 780
Query 846 CTACATGGTATACTGCTGTGCCGACCATTCATCAGATCATATTGGACCGCCACGCGAGCC 905
||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 781 CTACATGGTATACTGCTGTTCCGACTATTCATCAGATCATATTGGACCGCCACTCGAGCC 840
Query 906 ACCCTGAGACGGAATATCCTAAACTCCGGTTCATCAGGAGTTGCAGTGCTTCTTTGGCTC 965
|||||||| ||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 841 ACCCTGAGCCGGAATACCCTAAGCTCCGGTTCGTCAGGAGTTGCAGTGCTTCTTTGGCTC 900
Query 966 CGGTGATATTGTCCAGGCTTGAGGAAGCGTTTGGAGCACCGGTGCTCGAGGCCTATGCAA 1025
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 901 CGGTGATATTGTCCAGGCTTGAGGAAGCTTTTGGAGCACCGGTTCTCGAGGCCTATGCGA 960
Query 1026 TGACAGAGGCAACACATTTGATGAGCTCAAACCCCTTACCAGAGGAAGGTCCACACAAGC 1085
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGACAGAGGCAACACACTTGATGAGCTCAAACCCCTTACCAGAGGAAGGTCCACACAAGC 1020
Query 1086 CTGGGTCTGTTGGGAAACCGGTAGGTCAAGAAATGGCGATCCTTAATGAGAAAGGCGAGA 1145
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1021 CTGGGTCTGTTGGGAAACCGGTTGGTCAAGAAATGGCGATCCTCAATGAGAAAGGCGAGA 1080
Query 1146 TCCAAGAGCCAAATAACAAAGGAGAGGTTTGTATAAGAGGTCCAAATGTGACCAAGGGTT 1205
| |||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1081 TACAAGAGCCCAATAACAAGGGAGAGGTTTGTATAAGAGGGCCAAATGTGACGAAGGGTT 1140
Query 1206 ACAAGAATAACCCAGAAGCCAACAAGGCAGGTTTCGAGTTTGGGTGGTTCCACACTGGTG 1265
||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1141 ACAAGAACAATCCAGAGGCCAACAAGGCAGGTTTCGAGTTTGGGTGGTTCCACACGGGTG 1200
Query 1266 ATATCGGTTACTTTGATACCGATGGGTATTTGCATCTGGTGGGTCGGATCAAAGAGCTTA 1325
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1201 ATATCGGTTACTTTGATTCCGATGGGTATTTGCATCTGGTGGGTCGGATCAAAGAGCTAA 1260
Query 1326 TTAACCGTGGAGGTGAGAAGATATCTCCAATTGAAGTGGATGCAGTACTCTTAACGCATC 1385
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1261 TTAACCGTGGAGGTGAGAAGATATCTCCAATTGAAGTAGATGCAGTACTCTTAACTCATC 1320
Query 1386 CTGACGTTTCTCAGGGTGTTGCATTCGGTGTTCCTGATGAGAAATATGGGGAAGAGATTA 1445
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1321 CTGACGTTTCTCAGGGTGTTGCGTTCGGTGTTCCTGATGAGAAATATGGCGAAGAGATTA 1380
Query 1446 ACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGACATTAAAGCGTTTT 1505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1381 ACTGTGCGGTGATTCCAAGAGAAGGAACTACTGTAACCGAAGAGGACATTAAAGCGTTCT 1440
Query 1506 GTAAGAAGAATTTGGCAGCTTTCAAGGTGCCAAAGAGAGTGTTCATCACTGATAACCTCC 1565
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1441 GTAAGAAGAATTTGGCAGCTTTCAAGGTGCCAAAGAAAGTGTTCATCACTGATAACCTCC 1500
Query 1566 CCAAAACTGCCTCTGGTAAGATTCAGCGCCGTATCGTCGCACAACATTTCCTTGAGAAGC 1625
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 1501 CCAAAACTGCCTCTGGTAAGATTCAGCGTCGTATCGTCGCGCAACATTTCCTCGAGAAAC 1560
Query 1626 CCTGAAACACAC 1637
||| ||| ||||
Sbjct 1561 CCTAAAA-ACAC 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5