BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49060.1
Length=2647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485260 jgi|Araly1|485260|fgenesh2_kg.5__1252__AT3G49060.1 4002 0.0
> Ahg485260 jgi|Araly1|485260|fgenesh2_kg.5__1252__AT3G49060.1
Length=2562
Score = 4002 bits (2167), Expect = 0.0
Identities = 2436/2568 (95%), Gaps = 10/2568 (0%)
Strand=Plus/Plus
Query 12 AAAGTTATCAAATCTAGAGATAGAGAGAGTGA-AGAGGGCGAAAAATATGGGAGAAATCG 70
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 1 AAAGTTATCAAATCTAGAGATAGAGAGAGTGAGAAAAGGCGAAAAATATGGGAGAAATCG 60
Query 71 GTGGAGAAGAACTGGTCTTAGATGTGGATGAGACGATTTTCGTCGCGGTGGCGGAAGATG 130
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 61 GTGGAGAAGAACTGGTCTTAGATGTGGATGAGACGATCTTCGTCGCGGTTGCGGAAGATG 120
Query 131 TGGAGAGAAGCAAAACCACGGTGTTATGGGCGGCGCGTAACTTTTCCGGCAAGAAGATTT 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAGAGAAGCAAAACCACGGTGTTATGGGCGGCGCGTAACTTTTCCGGCAAGAAGATTT 180
Query 191 GCTTGCTTTATGTTCATCGAACTGCTCGCGCTGCCTCCTGGACGCACAAGAAACTTGTTG 250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 GCTTGCTTTATGTTCATCGAACTGCTCGCGCTGCCTCCTGGACGCACAAGAAACTTGTCG 240
Query 251 GTGGTAGCTTTAAAAAGCATGATGTCAAGGTGATTGAGCGAGTTGAGAAACCCAAAGTGG 310
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTGGTAGCTTTAAAAAACATGATGTCAAGGTGATTGAGCGAGTTGAGAAACCCAAAGTGG 300
Query 311 ATGAACTGATGAATTCTTATCTCCAACTTTTATCTGAAACTGAGATTCAAACAGATAAAC 370
|||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 301 ATGAGCTGATGAATTCTTATCTTCATCTTTTATCTGAAACTGAGGTTCAAACAGATAAAC 360
Query 371 TTTGCATTGCGGGGCAAAATATCGAGGAATGTATCGTAGAACTAATTGCTCGGCACAAAA 430
|||||||||||||||||||||| |||||| ||||| |||||||||||||||| |||||||
Sbjct 361 TTTGCATTGCGGGGCAAAATATTGAGGAAGGTATCTTAGAACTAATTGCTCGCCACAAAA 420
Query 431 TTAAGTGGTTAGTAATGGGAGCTGCATCAGATAAGCATTACTCATGGAAAATGACGGATC 490
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTAAGTGGTTAGTCATGGGAGCTGCATCAGATAAGCATTACTCATGGAAAATGACGGATC 480
Query 491 TAAAGTCCAAGAAAGCCATATTCGTTTGCAAAAAAGCTCCTGATTCCTGCCATATTTGGT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 TAAAGTCCAAGAAAGCCATATTCGTTTGCAAAAAAGCTCCTGATTCCTGCCATATCTGGT 540
Query 551 TTCTCTGTAAAGGTTACCTTATCTTTACAAGGGCGTCAAATGACGATAGTAATAACAGAC 610
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 TTCTGTGTAAAGGTTACCTTATCTTTACAAGGGCGTCAAATGAGGATAGTAATAACAGAC 600
Query 611 AAACAATGCCGCCCCTAGTACAGCTGGATTCAGATAACGAGACAAGGAAATCAGAAAAAT 670
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 AAACGATGCCGCCCCTAGTACAGCTGGATTCAGATAATGAGACAAGGAAATCAGAAAAAT 660
Query 671 TGGAATCTTCTTATATGAGGAGAAGATTAAGATATTGGCGCAGCCTCCTTGAACAAGATG 730
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGAATCGTCTTATATGAGGAGAAGATTAAGATATTGGCGCAGCCTCCTTGAACAAGATG 720
Query 731 GTGAGAAAGATACAGGTCAACTGGAGAGAGAAAAGGTAGAACCAAGAGCACCTCCTCTTT 790
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| | ||
Sbjct 721 GTGAGAAAGACACAGGTCAATTGGAGAGAGAAAAGGTAGAACCAAGAGCAACTCCACATT 780
Query 791 TTTCATCAGGTTCGAGTTCTTCCTTTGGAGAGCCGGTTGGTCCAGAGCCGGTTAGCCCAG 850
|||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 781 TTTCTTCAGGTTCGAGTTCTTCCTTTGGTGAGCCGGTTGGTCCAGAGCCTATTAGCCCAG 840
Query 851 AATTGGTTGACTCAGATACACTAAATACCTCAAATGTTGAGGAAAAAGAGCGTGAAGGGG 910
||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct 841 AATTGGTTGACTCGGATACACTAACTACCTCAAATGTTAAGGAAAAAGAGCGTGAAGGAG 900
Query 911 ATGTAGCGCGCAAAGTTCATAGGTATGATAAAGCCATGCATGATATTGGACAATCAGATA 970
|||| || |||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 901 ATGTTGCACGCAAAGTCCATAGGTATGATAAAGCCATGCATGATATTGGCCAATCAGAGA 960
Query 971 GAACGGTTTATGGGGAGGCTGGGAAAAAATGGGAAGAGGATGCCAGTACAACAGAGGCTT 1030
||||||| |||||||| |||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 961 GAACGGTATATGGGGAAACTGGGAAAAATTGGAAAGAGGATGCCAGTACCACAGAGGCTT 1020
Query 1031 TATGCAAGGCTAAAGCTTTGGAAGGCTTATGCATTAAGGAGTCGAGCCAAAGAAAGAGAT 1090
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TATGCAAGGCTAGAGCTTTGGAAGGCTTATGCATTAAGGAGTCGAGCCAAAGAAAGAGAT 1080
Query 1091 TGGAGGAATTGCTGGAAAAGGAAAAGCTTGAAGTAAAAATGGTAATAGAGCAAAACAATG 1150
||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 1081 TGGAGGAGTTGCTGGAAAAGGAAAAGCATGAAGTAAAAATGGTAATAGAGCAGAACAACG 1140
Query 1151 GATTCATGAAAGAACTTCAGATGGTTCAGGGTCGGAATCTTAAGTTGGAGAGCCAGATGA 1210
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1141 GATTCATGAAAGAACTTCAAATGGTTCAGGGTCAGAATCTTAAGTTGGAGAGCCAGATAA 1200
Query 1211 GGAAACTACAAGACTTGGAAAAAGAACATGGTGAGAAATTTGATACAGCTATGGAGCTCT 1270
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1201 GGAAACTGCAAGACTTGGAAAAAGAACATGGTGAGAAATTCGATACGGCTATGGAGCTCT 1260
Query 1271 TGAAAAGTTTCAGACAGAAAAGGGATGAGATCCGGATCGATCACGAGAACGCAGTAAAGG 1330
|||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1261 TGAAAAGTTTTAGGCAGAAAAGGGATGAGATCCGGATCGATCATGAGAACGCAGTAAAGG 1320
Query 1331 AAGTGAACGCACTGAGAAGACTGGTTAAAGGAGAGACCGGAGAGTCTTCTGGGTCGGAAA 1390
|||| |||||||||||||| ||| ||||||||||||| ||||||| ||||||||| ||||
Sbjct 1321 AAGTAAACGCACTGAGAAGGCTGATTAAAGGAGAGACTGGAGAGTTTTCTGGGTCAGAAA 1380
Query 1391 TGCTTGACTACTCTTTTATGGAAATCAATGAGGCTACTAACGAATTTGATCCATCTTGGA 1450
|||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1381 TGCTCGAGTACTCTTTTATGGAAATCAATGAGGCTACTAATGAATTTGATCCATCATGGA 1440
Query 1451 AACTTGGAGAAGGCAAATACGGAAGTGTCTATAAAGGGAATCTTCAACATCTTCAAGTTG 1510
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1441 AACTTGGAGAAGGCAAATACGGAAGTGTCTACAAAGGGAATCTTCAACATCTTCAAGTTG 1500
Query 1511 CTGTAAAGATGTTACCCTCATATGGATCCTTGAATCACTTTGAGTTTGAGCGTCGGGTGG 1570
| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1501 CAGTAAAGATGTTGCCCTCATATGGATCCCTGAATCACTTTGAGTTTGAGCGTCGGGTGG 1560
Query 1571 AGATTTTAAGCAGGGTAAGGCATCCAAATCTGGTAACACTGATGGGTGCTTGTCCAGAGT 1630
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 AAATTTTAAGCAGGGTGAGGCATCCAAATCTGGTAACACTGATGGGTGCTTGTCCAGAGT 1620
Query 1631 CTCGGTCTCTCATTTATCAATATATTCCTAACGGAAGCCTCGAAGACTGCTTTTCATCTG 1690
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1621 CTCGGTCTCTCATTTATCAATATATTCCTAACGGAAGCCTTGAAGACTGCTTTTCATCTG 1680
Query 1691 AAAACAACGTTCCTGCTCTTTCATGGGAATCTCGGATAAGGATTGCCTCTGAGATATGCT 1750
| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1681 AGAACAACGTGCCTGCACTTTCATGGGAATCTCGGATCAGGATTGCCTCTGAGATATGCT 1740
Query 1751 CTGCCCTTCTGTTTCTTCATTCAAACATTCCGTGCATCATTCATGGAAACCTAAAGCCGT 1810
|||| || |||||||||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct 1741 CTGCTCTCCTGTTTCTTCATACAAACATTCCTTGCATCATTCATGGAAACCTAAAACCGT 1800
Query 1811 CTAAGATTCTCCTGGATTCCAATCTCGTCACCAAAATCAACGACTACGGGATCTCTCAGC 1870
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1801 CTAAGATTCTCCTGGATTCCAATCTCGTCACCAAAGTCAACGACTACGGGATCTCTCAGC 1860
Query 1871 TGATCCCGATTGACGGATTAGACAAATCAGATCCTCATGTAGATCCACATTACTTCGTTT 1930
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1861 TGATCCCGATTGACGGATTCGACAAATCTGATCCTCACGTAGATCCACATTACTTTGTTT 1920
Query 1931 CAAGAGAAATGACGCTAGAATCAGATATATACGCGTTTGGGATCATTCTCCTGCAGCTTC 1990
| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1921 CCAGGGAAATGACGCTGGAATCAGATATATACGCGTTTGGGATCATTCTCCTTCAGCTTC 1980
Query 1991 TCACCAGAAGGCCTGTATCTGGCATACTGAGAGATGTCAAATGCGCTCTGGAGAACGATA 2050
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1981 TCACCAGAAGACCTGTATCTGGCATACTGAGAGACGTCAAATGCGCTCTGGAGAACGATA 2040
Query 2051 ACATCAGTGCGGTTCTGGATAATTCAGCAGGAGACTGGCCAGTCGCACGAGGTAAAAAGC 2110
|||||||||||||| |||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 2041 ACATCAGTGCGGTTTTGGATAATTCAGCAGGAGACTGGCCAATTGCACGAGGCAAAAAGC 2100
Query 2111 TAGCTAATGTAGCCATCCGTTGCTGTAAGAAAAACCCGATGAATCGACCAGACTTAGCAG 2170
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 2101 TAGCTAATGTAGCCATCCGTTGTTGTAAGAAAAACCCAATGAATCGACCAGACTTAGCAG 2160
Query 2171 TGGTTCTACGGTTTATAGATCGAATGAAAGCACCAGAAGTTCCTTCATCAGAGACATCAT 2230
||||||||||||||||||||||||||||||| |||||||| ||||||||||| | | |||
Sbjct 2161 TGGTTCTACGGTTTATAGATCGAATGAAAGCCCCAGAAGTGCCTTCATCAGA-A-A-CAT 2217
Query 2231 CATACGCCA-ACCAAAACGTTCCACGCCGGCCTCCTTCTCATTACCTCTGCCCCATTTTC 2289
||||| | | ||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2218 CATACTC-AGACCAAAAAGTTCCACGCCGCCCTCCTTCTCATTACCTCTGCCCTATTTTT 2276
Query 2290 CAGGAAGTGATGAAAGATCCTCTGATAGCAGCAGACGGATTCACTTACGAAGCAGAAGCG 2349
||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 2277 CAGGAAGTGATGAAAGATCCTTTGATAGCAGCAGATGGGTTCACTTACGAAGCAGAAGCG 2336
Query 2350 ATTAGAGAGTGGTTAGCGAATGGACACGATACGTCGCCAATGACAAACCTGAAAATGGAA 2409
|||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 2337 ATTAGAGAATGGTTAGCAAATGGACACGATACGTCGCCAATGACAAACTTGAAGATGGAA 2396
Query 2410 GATTGCAACCTCATACCTAATCACGCTCTTCATCTAGCTATCCAAGATTGGCAAAACCAA 2469
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 GATTGCAATCTCATACCTAATCACGCTCTTCATCTAGCTATCCAAGATTGGCAAAACCAA 2456
Query 2470 TGGTGATTTACTTTTGCCTT-CT-TTGAAAGACAACAATATTGCTATTTTTAACTCCCAA 2527
|||||||||||||||||||| || || | ||||||||||||||||||||||||||||||
Sbjct 2457 TGGTGATTTACTTTTGCCTTTCTATTCA--GACAACAATATTGCTATTTTTAACTCCCAA 2514
Query 2528 TTATTTTAGATTGTCACTTTGTAAATTTACCCCTAAAGGTATGAAAAA 2575
|| |||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 2515 TTTTTTTAGATTGTCACTTTGTAAATTGACCCCTAAACGTATGGAAAA 2562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99834532145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5