BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49260.3
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485285 jgi|Araly1|485285|fgenesh2_kg.5__1277__AT3G49260.1 2610 0.0
> Ahg485285 jgi|Araly1|485285|fgenesh2_kg.5__1277__AT3G49260.1
Length=1758
Score = 2610 bits (1413), Expect = 0.0
Identities = 1622/1721 (94%), Gaps = 22/1721 (1%)
Strand=Plus/Plus
Query 32 GTGAGACATCctctccttctc-aacttaagtctctctgtgacttctctctct--cacctc 88
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1 GTGAGACATCCTCTCCTTCTCTAACTTAAGTCTCTCTGTGACTTCTCTCTCTCACACCTC 60
Query 89 ttcttatctctctcgttctctttctctAAACTTCAACAATCGCTTCTAATCGTTTGATCA 148
||||| | | |||| |||| ||||||| ||||||| ||||||||||||| | |||||||
Sbjct 61 TTCTTCT-TATCTC--TCTCATTCTCTAGACTTCAAAAATCGCTTCTAATGGCTTGATCA 117
Query 149 CATTGCACAAACAT-TATTAATAGAGCTTATGATCAAAGAGTGTTGCCGGAAATATGGGG 207
|||||||||||||| || |||||||||||||||||||||| | |||||||||||||||||
Sbjct 118 CATTGCACAAACATGTAATAATAGAGCTTATGATCAAAGAATTTTGCCGGAAATATGGGG 177
Query 208 AAGAAAGGGAGTGGTGGATGGTTCTCGACGGTGAAGAAGAAAGTCTTCAAATCCTCTCCT 267
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 178 AAGAAAGGGAGTGGTGGATGGTTCTCGACGGTGAAGAAGAGAGTCTTCAAATCCTCTCCT 237
Query 268 AAAGACTCCAAGAGAGAGAACAACATTGGTAGTAATAACGCCGACATATGGCAGCAGCAG 327
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAAGACTCAAAGAGAGAGAACAACATTGGTAGTAATAACGCCGACATATGGCAGCAGCAA 297
Query 328 CATGATACGCAAGAAGTCGTGTCGTTTGAACATTTTCCGGCGGAAAGTTCACCGGAGATC 387
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 298 CACGATACGCAAGAAGTCGTGTCGTTTGAAAATTTTCCGGCGGAAAGTTCACCGGAGATC 357
Query 388 TCCCATGACGTCGAGAGCACAGCATCTACTCCAGCAACTAATGTTGGAGACAGAAAACAC 447
|| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 358 TCTCATGACGTTGAGAGCACAGCTTCTACTCCAGCAACCAATGTTGGAGACAGAAAACAC 417
Query 448 GCTATGGCTGTAGCTATAGCCACTGCAGCTGCTGCCGAAGCCGCGGTTGCAGCCGCACAA 507
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCCATGGCTGTGGCTATAGCCACTGCAGCTGCTGCCGAAGCCGCGGTTGCAGCCGCACAA 477
Query 508 GCTGCCGCTAAAGTCGTTCGACTTGCCGGCTACAACCGCCAGACGGAGGAAGATAGCGCC 567
|| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 478 GCCGCCGCTAAAGTTGTTCGGCTTGCCGGCTATAACCGCCAGACGGAGGAAGATAGCGCC 537
Query 568 GCCGTGCTAATCCAATCGCACTATAGGGGTTATTTGGCGAGACGAGCACTTCGTGCCTTA 627
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 GCCGTGCTCATCCAATCGCACTATAGGGGTTATTTGGCGAGGCGAGCACTTCGTGCCTTA 597
Query 628 AAAGGACTAGTTAGGCTACAAGCATTGGTCCGTGGCAACCACGTACGAAAACAGGCACAG 687
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 598 AAAGGACTAGTTAGGCTACAAGCATTGGTCCGTGGCAACCACGTTCGAAAACAGGCACAA 657
Query 688 ATGACTATGAAATGTATGCAAGCATTGGTTCGTGTCCAAGGCCGAGTCAGAGCAAGAAGA 747
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 658 ATGACTATGAAATGTATGCAAGCTTTGGTTCGTGTCCAAGGCCGAGTCAGAGCGAGAAGA 717
Query 748 CTCCAAGTGGCTCATGACCGGTTTAAGAAACAGTTTGAGGAAGAAGAGAAGCGGTCCGGG 807
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTACAAGTGGCTCATGACCGATTTAAGAAACAGTTTGAGGAAGAAGAGAAGCGGTCCGGG 777
Query 808 ATGGAAAAACCGAACAAGGTAGGGTTTGCGAATCTCAAAACGGAACGAGAGAAGCCGAAG 867
|||||||||| ||||||||| |||||||||||||||||| ||||||||||| ||||||
Sbjct 778 ATGGAAAAACTGAACAAGGT---GTTTGCGAATCTCAAAACCGAACGAGAGAAACCGAAG 834
Query 868 AAATTACATGAAGTGAATCGAACCAGTCTGTACCAAACTCAAGGAAAGGAAAAAGAGAGG 927
||||| |||||||| ||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 835 AAATTGCATGAAGTAAATCGAACCAGCCAGTACCAAACTCCGGGAAAGGAAAAAGAGAGG 894
Query 928 AGTGAAGGAATGATGAAAAGAGAGAGGGCTCTAGCTTATGCGTACACTTACCAGCGCCAA 987
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 895 AGTGAAGGAATGATGAAAAGAGAGAGGGCTCTTGCTTATGCATACACTTACCAGCGCCAA 954
Query 988 ATGCAACACACAAATAGTGAAGAAGGGATTGGGCTTTCTTCTAATGGGCCTGATAGAAAC 1047
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ATGCAACACACAAATGGTGAAGAAGGGATTGGGCTTTCTTCTAATGGGCCTGATAGAAAC 1014
Query 1048 CAATGGGCTTGGAATTGGCTTGACCATTGGATGTCTTCCCAGCCATACACTGGCCGTCAA 1107
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1015 CAATGGGCTTGGAATTGGCTTGACCATTGGATGTCTTCTCAGCCATACACAGGCCGTCAA 1074
Query 1108 ACTGGTCCGGGTCCCGGTCCCGGACAGTACAATCCTCCTCCGTATCCGCCTTTTCCGACA 1167
|| || |||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1075 ACCGGCCCGGCTCCCGGTCCCGGACAGTACAATCCTCCTCCGTATCCGCCTTTCCCGACA 1134
Query 1168 GCTGCGGCAACCACCACATCTGATGATGTATCGGAGAAGACGGTGGAAATGGACGTGACC 1227
|| || ||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1135 GCCGCAGCAGCCACCACATCTGATGATGTTTCGGAGAAGACGGTTGAAATGGACGTGACC 1194
Query 1228 ACTCCGACTAGCCTCAAGGGCAATATAATCGGGCTTATTGATCGAGAGTATATAGACTTA 1287
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ACTCCGACTAGCCTCAAGGACAATATAATCGGGCTTATTGATCGAGAGTATATAGACTTA 1254
Query 1288 GGATCATATAGACAAGGCCATAAGCAACGGAAAAGCCCAACCCATATACCAAGCTATATG 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GGATCATATAGACAAGGCCATAAGCAACGGAAAAGCCCAACCCATATACCAAGCTATATG 1314
Query 1348 GCTCCAACCGCATCTGCTAAGGCTAAAGTTCGAGATCAAGGCCCAACCGTCAAACTACAA 1407
||||||||||||||||| || |||||||||||||| |||||| |||||||||| ||||||
Sbjct 1315 GCTCCAACCGCATCTGCAAAAGCTAAAGTTCGAGACCAAGGCACAACCGTCAAGCTACAA 1374
Query 1408 GGAACTTCGTTTATGCCGTATTGGAACTCCTCGACCAAAAACGGGTCGGTTAATGGATCA 1467
||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1375 GGATCTTCTTTTATGCCGTACTGGAACTCCTCAACCAAAAACGGGTCGGTTAATGGATCA 1434
Query 1468 GGTTGTGATTCGTCAAGTTCAGGTGGAGCAATAACAACTGGTTATCCCGGTCCTAGGAGT 1527
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1435 GGTTGTGATTCATCAAGTTCAGGTGGAGCAATAACAACCGGTTACCCCGGTCCTAGGAGT 1494
Query 1528 CCGAACCCAAAATCGGATATCCGACGTAAACCGGTTAGTCCTAGTCAAAGTCCTACCGGG 1587
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CCTAACCCGAAATCGGATATCCGACGTAAACCGGTTAGTCCTAGTCAAAGTCCTACCGGG 1554
Query 1588 TTTGGAAAGAGAGGCTGGAGGCATGATCATTAGAAGAAAGT-ATATGTAA-TCTTGAATA 1645
||||| ||||||||||||||||||||||||||||||||| | || | ||| |||||||||
Sbjct 1555 TTTGGGAAGAGAGGCTGGAGGCATGATCATTAGAAGAAA-TCATCT-TAAATCTTGAATA 1612
Query 1646 AAAACTTACATGTGTG-G-TTGGTT----AATTATCTTGTTTGAAATATATTTTCCCTGT 1699
|||||||||||||||| | |||||| ||||||| |||||||||||||||||| |||
Sbjct 1613 AAAACTTACATGTGTGCGCTTGGTTGGTTAATTATCGTGTTTGAAATATATTTTCGTTGT 1672
Query 1700 TACATAATTGTATATGACATTAATAATTGAACATGTCTTCT 1740
||||||||||||||||||||||||||| |||||||| |||
Sbjct 1673 TACATAATTGTATATGACATTAATAAT--AACATGTCATCT 1711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65286679930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5