BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49340.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348033 jgi|Araly1|348033|fgenesh1_pg.C_scaffold_5001425 1541 0.0
Ahg937726 jgi|Araly1|937726|scaffold_501917.1 712 0.0
> Ahg348033 jgi|Araly1|348033|fgenesh1_pg.C_scaffold_5001425
Length=1026
Score = 1541 bits (834), Expect = 0.0
Identities = 964/1028 (94%), Gaps = 4/1028 (0%)
Strand=Plus/Plus
Query 1 ATGACTTCGATCGTTTTCTTTCTTCTAGCCATTCTTTTGAGTTCCAGAACTTCAGGAGTC 60
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1 ATGACTTCGATCATTTTCTTTCTTCTAGCCATTATTTTGAGTTCCAGAACTTCAGGAGCC 60
Query 61 ACATCTCGTGGCGGGCTCTTTGAAGCTTCTGCCGTAGAGAAACATGAGCAATGGATGTCT 120
||||||||||| |||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 61 ACATCTCGTGGGGGGCTCTTTGAAGCTTCTGCTATTGAAAAACATGAGCAATGGATGTCT 120
Query 121 CGATTCAATCGCGTGTACTCAGACGATTCTGAGAAAACGAGTAGGTTCGAGATCTTTACG 180
|||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 121 CGATTCCATCGCGTTTACTCAGACGATTCTGAGAAAACGAGTAGGTTTGAGATCTTTAAG 180
Query 181 AATAACTTAAAGTTTGTCGAGAGCATCAATATGAATACGAACAAAACGTACACGTTGGAT 240
|| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 181 AAGAACTTAAAGTTCGTCGAGAGCTTCAACATGAATACGAACAAAACGTACACGTTGGAT 240
Query 241 GTTAACGAGTTCTCTGATCTCACCGACGAGGAATTTAAGGCGAGGTACACGGGGCTGGTG 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTAACGAGTTCTCTGATCTAACCGACGAGGAATTTAAGGCGAGGTACACGGGGCTGGTG 300
Query 301 GTGCCCGAAGGTATGACCAGAATTTCAACAACTGATTCTCATGAAACGGTATCGTTTAGA 360
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 301 GTGCCCGAAGGTATGACCAGAATGTCAACAACGGATTCTCATGAAACGGTATCGTTTAGA 360
Query 361 TATGAAAACGTTGGTGAAACCGGTGAGAGCATGGATTGGATACAGGAAGGGGCTGTTACA 420
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 361 TATGAAAATGTTGGTGAAACCGGTGAGAGCATGGATTGGAGAGAGGAAGGGGCTGTTACA 420
Query 421 TCCGTTAAGCACCAACAACAATGTGGATGTTGCTGGGC-TTTCTCGGCGGTGGCAGCAGT 479
||||||||||||||||||||||||||| | || ||||| ||| || |||||||| |||||
Sbjct 421 TCCGTTAAGCACCAACAACAATGTGGAGGATGTTGGGCGTTT-TCCGCGGTGGCGGCAGT 479
Query 480 GGAAGGCATGACGAAGATTGCGAATGGAGAGCTTGTATCGCTGTCTGAGCAGCAACTGTT 539
||||||||| || |||||||| || || ||||| || |||||||||||||||||||||||
Sbjct 480 GGAAGGCATTACAAAGATTGCTAAAGGCGAGCTCGTGTCGCTGTCTGAGCAGCAACTGTT 539
Query 540 GGATTGTAGTACGGAAAACAATGGATGTGGCGGAGGGATAATGTGGAAAGCTTTCGACTA 599
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 GGATTGTAGTACGGAAAACGATGGATGTGACGGAGGGATAATGTGGAAAGCTTTCGACTA 599
Query 600 CATTAAAGAAAACCAAGGTATCACCACAGAGGATAACTATCCTTACCAAGGAGCACAACA 659
|||| |||||||||||| |||||| |||||||||| ||||| |||||||||||||||||
Sbjct 600 CATTGTAGAAAACCAAGGAATCACCGCAGAGGATAATTATCCCTACCAAGGAGCACAACA 659
Query 660 AACATGTGAGTCAAATCATCTAGCTGCTGCTACCATCAGCGGATACGAAACGGTTCCCCA 719
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AACCTGTGAGTCAAATCATGTAGCTGCTGCTACCATCAGCGGATACGAAACGGTTCCCCA 719
Query 720 AAATGACGAGGAAGCATTGCTAAAAGCAGTGTCTCAACAGCCTGTTTCCGTGGCGATCGA 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 720 AAATGACGAGGAAGCATTGCTAAAAGCGGTGTCTCAACAGCCTGTTTCCGTGGCGATAGA 779
Query 780 AGGGTCAGGATATGAGTTTATACACTACTCGGGAGGGATATTTAACGGAGAGTGTGGGAC 839
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 780 AGGGTCAGGATATGAGTTTATACACTACTCAGGCGGGATATTTAACGGAGAGTGTGGGAC 839
Query 840 GCAGCTT-ACTCATGCAGTTACTATAGTTGGTTATGGGGTGAGCGAAGAAGGCATCAAGT 898
||| || | |||||| ||||| || |||||||||||||||||||||||||| || ||||
Sbjct 840 GCAT-TTGAATCATGCGGTTACGATTGTTGGTTATGGGGTGAGCGAAGAAGGGATTAAGT 898
Query 899 ATTGGTTGTTGAAGAACTCATGGGGAGAATCTTGGGGAGAAAATGGTTATATGAGAATCA 958
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 899 ATTGGTTGTTGAAGAACTCGTGGGGAGAATCTTGGGGAGAAGATGGTTATATGAGAATCA 958
Query 959 TGAGAGACGTAGATTCACCTCAGGGAATGTGTGGTTTGGCCAGCCTTGCTTACTATCCAG 1018
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 959 TGAGAGACGTAGATGCACCTCAAGGAATGTGTGGTTTGGCCAGCCTTGCTTACTATCCAG 1018
Query 1019 TTGCTTGA 1026
| ||||||
Sbjct 1019 TAGCTTGA 1026
> Ahg937726 jgi|Araly1|937726|scaffold_501917.1
Length=955
Score = 712 bits (385), Expect = 0.0
Identities = 614/719 (85%), Gaps = 38/719 (5%)
Strand=Plus/Plus
Query 55 GGAGTCACATCTCGT-GGCGGGCTCTTTGAAGCTTCTGCCGTAGAGAAACATGAGCAATG 113
|||| |||||||||| || |||||||||||||||||||| | || ||||||||||||||
Sbjct 23 GGAGCCACATCTCGTGGGGGGGCTCTTTGAAGCTTCTGCTATTGAAAAACATGAGCAATG 82
Query 114 GATGTCTCGATTCAATCGCGTGTACTCAGACGATTCTGAGAAAACGAGTAGGTTCGAGAT 173
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 83 GATGTCTCGATTCAATCGCGTTTACTCGGACGATTCTGAGAAAACGAGTAGGTTCGAGAT 142
Query 174 CTTTACGAATAACTTAAAGTTTGTCGAGAGCATCAATATGAATACGAACAAAACGTACAC 233
||||| ||| ||||||||||| || |||||| |||| |||||||||||||| |||||||
Sbjct 143 CTTTAAGAAGAACTTAAAGTTCGTTGAGAGCTTCAACATGAATACGAACAATACGTACAA 202
Query 234 GTTGGATGTTAACGAGTTCTCTGATCTCACCGACGAGGAATTTAAGGCGAGGTACACGGG 293
||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||| |||
Sbjct 203 GTTGGATGTCAACAAGTTCTCTGATCTTACCGACGAGGAATTTCAGGCGAGGTACATGGG 262
Query 294 GCTGGTGGTGCCCGAAGGTATGACCAGAATTTCAACAACTGATTCTCATG-AAACGGTAT 352
|| ||||||| |||||||||||| | | ||||| || | ||||||| |
Sbjct 263 GC---TGGTGCCGGAAGGTATGACC-G---------GA--GATTCCCA-GAAAACGGTGT 306
Query 353 CGTTTAGATATGAAAACGTTGGTGAAACCGGTGAGAGCATGGATTGGATACAGGAAGGGG 412
|||||||||||||||| || ||||||||||||||||||||||||||| || ||||||||
Sbjct 307 CGTTTAGATATGAAAATGTCAGTGAAACCGGTGAGAGCATGGATTGGAGACTGGAAGGGG 366
Query 413 CTGTTACATCCGTTAAGCACCAACAACAATGTGGATGTTGCTGGGCTTTCT-CGGCGGTG 471
| |||||| |||||||| ||||| |||||||||||||| |||||||| | ||||||||
Sbjct 367 CCGTTACACCCGTTAAGGACCAAGGCCAATGTGGATGTTGTTGGGCTTT-TGCGGCGGTG 425
Query 472 GCAGCAGTGGAAGGCATGACGAAGATTGCGAATGGAGAGCTTGTATCGCTGTCTGAGCAG 531
|| || ||||||||| | || |||||| ||| ||||||||||||||||||||||||||||
Sbjct 426 GCGGCTGTGGAAGGCGTAACAAAGATTTCGAGTGGAGAGCTTGTATCGCTGTCTGAGCAG 485
Query 532 CAACT-GTTGGATTGTAGTACGG--AA-AACAA--TGG-ATGTGGCGGAGGGATAA--TG 582
||||| || |||||| ||||| | || ||||| ||| ||||| ||||||| | | |
Sbjct 486 CAACTAGT-GGATTGCAGTACAGCCAACAACAACATGGGATGTGACGGAGGG-TCAGCTT 543
Query 583 TGGAAAGCTTTCGACTACATTAAAGAAAACCAAGGTATCACCACAGAGGATAACTATCCT 642
|| | ||||| ||||||||| |||||||||||||| ||||||| ||||| ||||||||
Sbjct 544 TG-ACAGCTTACGACTACATAAAAGAAAACCAAGGAATCACCAGGGAGGAAAACTATCCC 602
Query 643 TACCAAGG-AGCACAACAAACATGTGA-GTCAAATCATCTAGCTGCTGCTACCATCAGCG 700
||||| || || ||||||||| ||| | ||||| | ||| ||||||||||||||||||||
Sbjct 603 TACCA-GGCAGTACAACAAACCTGT-ACGTCAACTGATCCAGCTGCTGCTACCATCAGCG 660
Query 701 GATACGAAACGGTTCCCCAAA-ATGACGAGGAAGCATTGCTAAAAGCAGTGTCTCAACA 758
||||||| ||||||| ||| |||| |||||||||||||||||||| |||||||||||
Sbjct 661 GATACGAGGCGGTTCCA-AAAGATGATGAGGAAGCATTGCTAAAAGCGGTGTCTCAACA 718
Score = 224 bits (121), Expect = 1e-57
Identities = 160/179 (89%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 849 TCATGCAGTTACTATAGTTGGTTATGGGGTGAGCGAAGAAGGCATCAAGTATTGGTTGTT 908
|||||| ||||| || ||||||||||| ||| |||||||| || |||||||||||| |
Sbjct 758 TCATGCTGTTACGATTGTTGGTTATGGTACGAGTGAAGAAGGGATTAAGTATTGGTTGCT 817
Query 909 GAAGAACTCATGGGGAGAATCTTGGGGAGAAAATGGTTATATGAGAATCATGAGAGACGT 968
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 818 GAAGAACTCATGGGGAGAATCTTGGGGAGAGAATGGTTACATGAGAATCATGAGAGACGT 877
Query 969 AGATTCACCTCAGGGAATGTGTGGTTTGGCC-AGCCTTGCTTACTATCCAGTTGCTTGA 1026
||| |||||| |||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 878 GGATGAACCTCAAGGAATGTGTGGTTTGGCCCA-CCGTGCTTACTATCCAGTTGCTTGA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5