BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49470.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485304 jgi|Araly1|485304|fgenesh2_kg.5__1296__AT3G49470.1 1179 0.0
Ahg904129 jgi|Araly1|904129|Al_scaffold_0003_1257 145 7e-34
> Ahg485304 jgi|Araly1|485304|fgenesh2_kg.5__1296__AT3G49470.1
Length=725
Score = 1179 bits (638), Expect = 0.0
Identities = 698/727 (96%), Gaps = 3/727 (0%)
Strand=Plus/Plus
Query 28 ACCTCACCGTTCCTTATCCATTTGGCTGACGCAAAATCGAATCGGAACCCTAAAATCTCT 87
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ACCACACCGTTCCTTATCCATTTGTCTGACGCAAAATCGAATCGGAACCCTAAAATCTCT 60
Query 88 CCGAAAGCCATGTCTCCTCCTCCTGCTGTAGTCACTGAATCTGCCGATGGACAACCTGAG 147
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 -CGAAAGCCATGTCTCCTCCTCCTGCTGTAGTCACTGAATCCGCCGATGGACAACCTGAG 119
Query 148 CAACCACCGGTTACCGCCATTGCTGAAGAGCTGGAGAAAAAGCTTCAGACtgatgaaccg 207
|||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAACCACCAGCTGCTGCCATTGCTGAAGAGCTGGAGAAAAAGCTTCAGACTGATGAACCG 179
Query 208 attgtagaagatgttaaagatgatgaagacgatgatgatgatgacgaagaagaggaagac 267
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTGTAGAAGATGTTAAAGATGACGAAGACGATGATGATGATGACGAAGAAGAGGAAGAC 239
Query 268 gacgatgCTCAAGGTGTAAGTGGAAGTTCAAAGCAGAGTAGAAGTGAAAAGAAGAGTAGG 327
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GACGATGCTCAAGGTGTTAGTGGAAGTTCAAAGCAGAGTAGAAGTGAAAAGAAGAGTAGG 299
Query 328 AAGGCGATGTTGAAGCTCGGTATGAAACCTGTCACTGGTGTTAGTC-GAGTAACCATCAA 386
||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 300 AAGGCGATGTTGAAGCTCGGTATGAAACCAGTCACTGGTGTTAG-CAGAGTAACCATCAA 358
Query 387 GAGAACGAAAAACGTTCTCTTCTTTATCTCTAAGCCTGATGTCTTTAAGAGCCCGCATTC 446
||||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||
Sbjct 359 GAGAACGAAAAACGTACTCTTCTTCATCTCTAAACCGGATGTCTTCAAAAGCCCGCATTC 418
Query 447 AGAAACCTATGTTATATTCGGTGAGGCCAAGATCGAGGATTTGAGCTCTCAGCTTCAAAC 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGAAACCTATGTTATATTCGGTGAGGCCAAGATCGAGGATTTGAGCTCTCAGCTTCAAAC 478
Query 507 GCAAGCTGCTCAACAGTTTAGGATGCCTGAAATTGGAGCCACATCTCAGAGAGCAGAGGC 566
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 479 GCAAGCTGCTCAACAGTTTAGGATGCCTGAAATCGGAGCCACAGCTCAGAGAGCAGAGGC 538
Query 567 ATCGACAGCCACTGTAGAAGCACAGGTGGAAGAAGATGAAGAGGAAATCGATGAGACCGG 626
|||| ||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 539 ATCGGCAGCCACAGTAGAAGCACAGGTGGAAGAAGATGAAGAGGACATTGATGAGACCGG 598
Query 627 TGTGGAGGCTCGTGACATTGACTTGGTCATGACTCAGGCTGGAGTTTCTCGTAGCAAAGC 686
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 TGTGGAGGCTCGTGACATTGACTTGGTCATGACTCAGGCTGGAGTTTCGCGTAGCAAAGC 658
Query 687 GGTTAAAGCACTCAAGAGTCACGATGGAGACATTGTAAGTGCAATAATGGAACTCACTAC 746
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 GGTTAAGGCACTCAAGAGTCACAATGGAGACATTGTAAGTGCAATAATGGAACTCACTAC 718
Query 747 TTGAGAG 753
|| ||||
Sbjct 719 TTAAGAG 725
> Ahg904129 jgi|Araly1|904129|Al_scaffold_0003_1257
Length=528
Score = 145 bits (78), Expect = 7e-34
Identities = 170/213 (80%), Gaps = 11/213 (5%)
Strand=Plus/Plus
Query 291 AAGTTCAAAGCAGAGTAGAAGTGAAAAGAAGAGTAGGAAGGCGATGTTGAAGCTCGGTAT 350
||| ||||| || || |||||||| ||||||||| | || || ||| | |||||||| ||
Sbjct 82 AAG-TCAAAACAAAGCAGAAGTGAGAAGAAGAGTCGCAAAGCCATGCTCAAGCTCGGGAT 140
Query 351 GAAACCTGTCACTGGTGTTAGTCGAGTAACCATC---AAGAG-AACGAAAAACGTTCTCT 406
|||||| ||||||||||||| ||||| ||| || ||||| || ||| | | || | |
Sbjct 141 GAAACCCATCACTGGTGTTAGCCGAGTCACCGTCAAAAAGAGCAA-GAATATC-TTGT-T 197
Query 407 TCTTTATCTCTAAGCCTGATGTCTTTAAGAGCCC-GCATTCAGAAACCTATGTTATATTC 465
| | || || || |||||||| || |||||||| ||| ||||| || ||||| || ||
Sbjct 198 T-GTCATATCAAAACCTGATGTGTTCAAGAGCCCGGCA-TCAGACACATATGTGATCTTT 255
Query 466 GGTGAGGCCAAGATCGAGGATTTGAGCTCTCAG 498
|| ||||||||||||||||||||||||||||||
Sbjct 256 GGAGAGGCCAAGATCGAGGATTTGAGCTCTCAG 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5