BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49670.1
Length=3452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937778 jgi|Araly1|937778|scaffold_501969.1 4726 0.0
Ahg496807 jgi|Araly1|496807|fgenesh2_kg.8__2623__AT5G65700.1 2396 0.0
> Ahg937778 jgi|Araly1|937778|scaffold_501969.1
Length=3051
Score = 4726 bits (2559), Expect = 0.0
Identities = 2898/3063 (95%), Gaps = 18/3063 (1%)
Strand=Plus/Plus
Query 146 GAAAGAGAAGaaaaaaaacaaaaaaaaaaTGAAGCTTCTTCTTctcctcctcctcctcct 205
||||||| | ||||||||| |||||| ||||||||||||||||| || |||||||||||
Sbjct 1 GAAAGAG-A-AAAAAAAAC-AAAAAACCATGAAGCTTCTTCTTCTTCTTCTCCTCCTCCT 57
Query 206 tctcctccACATTTCTCATTCCTTCACCGTCGCTAAACCAATCACCGAGCTCCACGCTCT 265
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 58 CCTCCTCCACATTTCTCATTCCTTCACCGTAGCTAAACCAATCACCGAGCTCAACGCTCT 117
Query 266 TCTCTCACTCAAATCCTCCTTCACCATCGACGAACACTCACCTCTCCTGACCTCATGGAA 325
||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 118 TCTCTCACTCAAATCCTCCCTCACCATCGACGAACACTCACCTCT-C--ACCTCATGGAA 174
Query 326 CCTTTCAACAACTTTCTGTTCATGGACCGGTGTCACGTGCGACGtctctctccgtcacgt 385
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 175 CCTTTCAACAACCTTCTGTTCATGGACCGGTGTCACGTGCGACGTCTCTCGCCGGCACGT 234
Query 386 gacctctctcgacctctcaggtcttaacctctccggaactctctcctccGACGTAGCTCA 445
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GACCTCTCTCGACCTCTCTGGTCTTAACCTCTCCGGAACTCTCTCCTCCGACGTAGCTCA 294
Query 446 TTTACCTCTGC-TACAGAATCTATCACTCGCTGCTAATCAGATCTCAGGTCCTATTCCGC 504
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTTACCTCT-CTTACAGAATCTATCACTCGCTGCTAATCAGATCTCAGGTCCTATTCCGC 353
Query 505 CGCAAATCTCCAATCTCTATGAGCTTCGTCACCTCAATCTCTCCAATAATGTCTTCAACG 564
|| ||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 354 CGGAAATCTCCAATCTTTACGAGCTTCGTCATCTCAATCTCTCCAATAATGGCTTCAACG 413
Query 565 GTTCATTTCCCGATGAACTCTCCTCTGGATTGGTGAATCTCCGTGTTCTTGACTTATACA 624
|||||| |||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 414 GTTCATATCCCGATGAACTCTCCTCTGGATTGGTGAATCTCCGTGTTCTCGATTTGTATA 473
Query 625 ACAACAATTTAACCGGAGATTTACCGGTTTCACTCACTAATCTCACTCAGCTCCGTCATC 684
||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 474 ACAACAACTTAACCGGAGATTTACCGGTTTCAATCACTAATCTGACTCAGCTCCGGCATC 533
Query 685 TTCACCTCGGTGGGAATTACTTCTCCGGCAAAATCCCGGCGACGTACGGAACCTGGCCTG 744
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 534 TTCACCTCGGTGGGAATTACTTCTCCGGTAAAATCCCGGCGACGTACGGAACCTGGCCTG 593
Query 745 TTCTCGAATACT-TAGCGGTTTCCGGTAACGAGCTAACCGGTAAAATCCCTCCGGAGATC 803
||||||| || | |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 594 TTCTCGAGTA-TCTAGCGGTTTCCGGTAACGAGCTAATCGGTAAAATCCCTCCGGAGATC 652
Query 804 GGAAACCTAACGACTCTTCGTGAACTTTACATCGGATATTACAACGCTTTTGAAAATGGT 863
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 653 GGAAACCTAACGACTCTTCGTGAACTTTACATCGGATATTACAACGCTTTTGAAGATGGT 712
Query 864 CTTCCACCGGAGATTGGAAATTTATCAGAGCTTGTTCGGTTCGACGCTGCTAATTGTGGT 923
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 713 CTTCCACCGGAGATTGGAAATTTGTCGGAGCTTGTTCGGTTCGACGCTGCTAATTGTGGT 772
Query 924 TTAACCGGAGAGATTCCACCGGAGATTGGGAAGCTTCAGAAGCTAGATACGTTGTTTCTT 983
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTAACCGGTGAGATTCCACCGGAGATTGGGAAGCTTCAGAAGCTAGATACGTTGTTTCTT 832
Query 984 CAAGTAAACGCATTTACAGGGACAATAAC-TCAAGAGCTGGGATTGATTTCAAGCTTGAA 1042
|||||||| || ||| |||||||| |||| || |||||||||||| || |||||||||||
Sbjct 833 CAAGTAAATGCGTTTTCAGGGACATTAACTTC-AGAGCTGGGATTTATCTCAAGCTTGAA 891
Query 1043 ATCGATGGATCTGTCTAACAATATGTTTACCGGCGAGATTCCGACGAGTTTTTCACAGCT 1102
||| |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 892 ATCAATGGATTTGTCTAACAATATGTTTACCGGTGAGATTCCGGCGAGTTTTTCACAGCT 951
Query 1103 GAAGAACTTAACGCTT-TTGAATCTCTTCAGGAATAAGCTCTACGGTGCTATACCTGAGT 1161
||||||||||||| || ||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 952 GAAGAACTTAACG-TTGTTGAATCTCTTCAGGAACAAGCTATACGGTGGTATACCTGAGT 1010
Query 1162 TCATCGGTGAAATGCCGGAGCTTGAAGTGTTGCAGCTTTGGGAGAACAATTTCACTGGTA 1221
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1011 TCATCGGTGAAATGCCGGAGCTAGAAGTGTTACAGCTTTGGGAGAACAATTTCACCGGTG 1070
Query 1222 GTATTCCTCAGAAATTGGGGGAAAATGGTAGATTAGTGATTCTTGATCTCTCTTCGAACA 1281
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1071 GTATTCCTCAGAAATTGGGGGAAAATGGTAGATTAGTGATTCTTGACCTCTCTTCAAACA 1130
Query 1282 AACTCACCGGAACTCTGCCGCCGAATATGTGTTCTGGTAACCGGTTAATGACGTTAATCA 1341
|||||||||| ||| |||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 1131 AACTCACCGGCACTTTGCCGCCGAATATGTGCTCCGGTAACCGGTTAATGACATTAATCA 1190
Query 1342 CTCTTGGCAACTTCTTGTTTGGTTCAATACCGGATTCGCTTGGTAAATGTGAGTCTCTGA 1401
|||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1191 CTCTCGGTAACTTCTTGTTTGGTTCAATCCCGGATTCGCTTGGCAAATGTGAGTCTCTGA 1250
Query 1402 CCCGGATCCGGATGGGTGAGAATTTCCTTAACGGGTCGATTCCAAAGGAGCTCTTCGGGT 1461
|||||||||| |||||||||||||| || ||||||||||||||||||| ||| |||||||
Sbjct 1251 CCCGGATCCGAATGGGTGAGAATTTTCTCAACGGGTCGATTCCAAAGGGGCTTTTCGGGT 1310
Query 1462 TACCTAAATTATCTCAAGTGGAGCTCCAAGACAATTACCTTACCGGAGAGTTGCCAATAA 1521
|||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||
Sbjct 1311 TACCCAAATTATCTCAAGTGGAGCTTCAAGATAATTACCTCACCGGAGAGTTACCGATAA 1370
Query 1522 GCGGAGGAGGAGTCTCTGGTGACCTTGGTCAGATTAGTCTTTCTAATAACCAGCTCTCTG 1581
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1371 GCGGAGGGGGAGTCTCTGGTGACCTTGGTCAGATTAGTCTGTCTAATAACCAGCTCTCTG 1430
Query 1582 GTTCATTACCTGCAGCTATTGGAAACTTGTCCGGTGTTCAAAAACTACTTCTTGATGGTA 1641
|| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1431 GTCCATTACCTGCTGCTATTGGAAACTTCTCCGGTGTTCAAAAACTACTCCTTGATGGTA 1490
Query 1642 ACAAGTTCT-CTGGTTCGATTCCTCCCGAGATTGGGAGGCTTCAGCAGCTATCTAAGTTG 1700
||||||| | ||||| | ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1491 ACAAGTT-TGCTGGTCCCATTCCACCGGAGATTGGGAGGCTTCAGCAGCTATCTAAGTTG 1549
Query 1701 GATTTTAGCCACAATCTGTTCTCCGGTCGGATCGCACCGGAGATCAGTCGTTGTAAGCTG 1760
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1550 GATTTTAGCCATAATCTGTTTTCGGGTCGGATCGCACCGGAGATCAGTCGTTGTAAGCTG 1609
Query 1761 CTAACGTTTGTTGATCTTAGCCGTAATGAGCTCTCAGGTGATATTCCTAATGAACTCACA 1820
||||||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||
Sbjct 1610 CTAACGTTTGTTGATCTGAGTCGTAATGAGCTCTCAGGTGATATTCCTAAAGAAATCACT 1669
Query 1821 GGTATGAAGATCTTGAATTACTTGAATCTTTCAAGAAACCATCTCGTTGGTTCCATACCT 1880
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1670 GGTATGAGGATCTTGAATTACTTGAATCTTTCAAGAAACCATCTCGTTGGTTCGATACCT 1729
Query 1881 GTGACGATAGCATCAATGCAGAGTTTGACATCGGTTGATTTCTCTTACAACAATCTCTCC 1940
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1730 GTGACGATAGCATCAATGCAGAGTTTGACATCAGTTGATTTCTCTTACAACAATCTCTCT 1789
Query 1941 GGTTTAGTTCCCAGCACTGGACAGTTTAGTTACTTCAATTACACATCGTTTGTGGGTAAC 2000
||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1790 GGTCTAGTTCCGAGCACTGGACAGTTTAGTTACTTCAATTACACATCGTTTTTGGGTAAT 1849
Query 2001 TCTCATCTTTGTGGTCCGTATTTGGGTCCTTGCGGCAAAGGAACTCACCAGTCTCATGTC 2060
||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1850 TCTGATCTTTGTGGTCCTTATTTGGGTCCTTGCGGAAAAGGAACTCACCAGCCTCATGTT 1909
Query 2061 AAACCTTTATCTGCTACTACGAAACTGTTACTCGTCCTTGGATTGCTCTTTTGTTCGATG 2120
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1910 AAGCCTTTATCTGCTACTACAAAACTGTTACTCGTCCTCGGATTGCTCTTTTGTTCGATG 1969
Query 2121 GTGTTTGCTATAGTGGCCATAATCAAAGCTCGGTCCTTGCGAAATGCGAGTGAAGCCAAG 2180
|||||||| ||||||||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct 1970 GTGTTTGCCATAGTGGCCATTACCAAAGCTCGGTCCTTGAGAAATGCGAGTGAAGCCAAG 2029
Query 2181 GCATGGAGATTGACTGCTTTCCAGAGGCTAGACTTCACTTGTGACGATGTCTTGGACTCT 2240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2030 GCATGGAGATTGACTGCTTTCCAGAGACTAGACTTCACTTGTGACGATGTCTTGGACTCT 2089
Query 2241 CTCAAGGAAGACAACATCATCGGTAAAGGCGGTGCTGGGATTGTCTACAAAGGCACTATG 2300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 2090 CTCAAGGAAGACAACATCATCGGTAAAGGCGGTGCCGGGATTGTCTACAAAGGCATTATG 2149
Query 2301 CCTAAAGGCGACCTAGTCGCGGTCAA-ACGATTGGCTACAATGTCCCATGGATCTTCCCA 2359
||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2150 CCTAACGGCGATCTAGTCGCGGTCAAGA-GATTGGCTACAATGTCCCATGGATCTTCCCA 2208
Query 2360 CGATCACGGGTTCAACGCCGAGATTCAGACGCTAGGTAGAATCAGACACAGACACATCGT 2419
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2209 TGATCACGGGTTCAACGCCGAGATTCAAACGCTAGGTAGAATCAGACACAGACACATCGT 2268
Query 2420 GAGACTGCTCGGTTTTTGCTCCAACCACGAAACGAATCTCCTTGTGTACGAGTACATGCC 2479
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2269 GAGACTGCTCGGGTTTTGCTCCAACCACGAAACGAATCTCCTAGTGTACGAGTACATGCC 2328
Query 2480 TAATGGTAGCCTTGGAGAGGTTCTTCATGGAAAGAAAGGAGGTCATTTACATTGGAACAC 2539
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2329 TAATGGTAGCCTTGGAGAGGTTCTTCATGGAAAGAAAGGAGGTCATTTACATTGGGACAC 2388
Query 2540 ACGTTATAAGATAGCTCTTGAAGCAGCCAAGGGTCTTTGCTATCTCCACCATGATTGTTC 2599
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2389 ACGTTATAAGATTGCTCTTGAAGCAGCCAAGGGTCTTTGCTATCTCCACCACGATTGTTC 2448
Query 2600 CCCGTTGATCGTCCATAGAGATGTTAAATCCAACAACATCCTCCTCGATTCCAACTTCGA 2659
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2449 CCCGTTGATCGTTCATAGAGATGTTAAATCCAACAATATCCTCCTCGATTCCAACTTTGA 2508
Query 2660 AGCTCATGTCGCCGACTTTGGTCTCGCCAAGTTCCTCCAAGATTCCGGTACTTCTGAATG 2719
||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 2509 AGCTCATGTCGCCGATTTTGGCCTCGCCAAATTCCTCCAAGATTCTGGTACTTCTGAATG 2568
Query 2720 TATGTCCGCAATTGCCGGCTCCTACGGCTACATAGCTCCAGAGTACGCGTATACATTGAA 2779
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2569 TATGTCCGCCATCGCCGGCTCTTACGGCTACATAGCTCCAGAGTACGCGTATACATTGAA 2628
Query 2780 GGTAGATGAGAAGAGCGATGTGTATAGTTTCGGTGTTGTTCTTCTAGAACTCATCACCGG 2839
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2629 GGTAGATGAGAAGAGTGATGTGTATAGTTTCGGTGTTGTTCTTCTAGAACTCATCACCGG 2688
Query 2840 GAAAAAACCCGTCGGAGAATTTGGCGACGGCGTTGATATTGTTCAATGGGTGAGAAGCAT 2899
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 2689 GAAAAAACCCGTCGGAGAATTTGGTGACGGCGTTGATATCGTTCAATGGGTTAGAAGCAT 2748
Query 2900 GACGGATTCAAATAAAGATTGTGTGCTCAAAGTAATCGATCTTAGACTCTCTTCAGTTCC 2959
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 2749 GACGGATTCAAATAAAGATTGTGTGCTCAAAGTAATTGATCTTAGACTCTCTTCTGTACC 2808
Query 2960 AGTTCACGAGGTAACACACGTCTTCTACGTTGCGTTGCTCTGCGTTGAAGAACAAGCGGT 3019
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2809 AGTTCACGAAGTAACACACGTCTTCTACGTTGCGTTGCTCTGCGTTGAAGAACAAGCGGT 2868
Query 3020 GGAGAGGCCGACGATGCGTGAAGTCGTTCAGATTCTCACTGAGATCCCAAAAATTCCTCT 3079
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2869 GGAGAGGCCGACGATGCGTGAAGTCGTTCAGATTCTCACTGAGATCCCAAAGATCCCTCT 2928
Query 3080 TTCGAAGCAGCAAGCGGCGGAATCAGACGTGACTGAGAAAGCTCCGGCGATTAATGAATC 3139
|||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2929 TTCGAAGCAGCAGGCGGCGGAATCAGACGTGTCGGAGAAAGCTCCGGCGATTAATGAATC 2988
Query 3140 GTCGCCGGATTCAGGAAGTCCACCGGATCTTTTAAGTAATTAGACTTTCCGGCGATTGGG 3199
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2989 GTCGCCAGATTCAGGAAGTCCACCGGATCTTTTAAGTAATTAGACTTTCCGGCAATTGGG 3048
Query 3200 TTT 3202
|||
Sbjct 3049 TTT 3051
> Ahg496807 jgi|Araly1|496807|fgenesh2_kg.8__2623__AT5G65700.1
Length=3321
Score = 2396 bits (1297), Expect = 0.0
Identities = 2430/2966 (82%), Gaps = 122/2966 (4%)
Strand=Plus/Plus
Query 169 aaaaaaTGAAGCTTCTTCTTctcctcctcctcctccttctcctccACATTTCTCATTCCT 228
||| |||||| ||| |||||||||| | || | |||| ||||||||||||||| |||
Sbjct 63 AAACAATGAAACTTTTTCTTCTCCT--T-CT--T-TTTCTTCTCCACATTTCTCATACCT 116
Query 229 TCACCGTC--GCTAAACCAATCACCGAGCTCCACGCTCTTCTCTCACTCAAATCCTCCT- 285
||||| | || ||||||| ||||| ||| |||||||||||||||||||||| ||
Sbjct 117 TCACC-ACAAGC-CGACCAATCTCCGAGTTCCGTGCTCTTCTCTCACTCAAATCCT-CTC 173
Query 286 TCACCATCGAC---GA--AC----ACTCACCTCTCCTGACCTCATGGAACCTTTCAAC-A 335
||||| || | || || |||| ||||| || |||| ||||| | ||||| |
Sbjct 174 TCACCGGCGCCGGAGATGACAAAAACTCGCCTCT-CT--CCTCCTGGAAAGTCTCAACTA 230
Query 336 ACTTTCTGTTCATGGACCGGTGTCACGTGCGACGtctctctccgtcacgtgacctctctc 395
| |||||| ||||||| |||||||||||||||||||||| ||| |||||||| |||||
Sbjct 231 GC-TTCTGTACATGGACTGGTGTCACGTGCGACGTCTCTCGCCGGCACGTGACTTCTCTT 289
Query 396 gacctctcaggtcttaacctctccggaactctctcctcc-GACGTAGCTCATTTACCTCT 454
|| ||||| ||||||||||||||||| ||||| | |||| || || ||||||||| |||
Sbjct 290 GATCTCTCTGGTCTTAACCTCTCCGGTACTCT-TTCTCCAGATGTTTCTCATTTACGTCT 348
Query 455 GCTACAGAATCTATCACTCGCTGCTAATCAGATCTCAGGTCCTATTCCGCCGCAAATCTC 514
|| |||||||| || ||||||| ||||||||||| ||||| ||||||||| |||||||
Sbjct 349 TCTTCAGAATCTCTCGCTCGCTGAAAATCAGATCTCCGGTCCGATTCCGCCGGAAATCTC 408
Query 515 CAATCTCTATGAG-CTTCGTCACCTCAATCTCTCCAATAATGTCTTCAACGGTTCATTTC 573
| || | | | ||||||||| | |||||||| || |||| |||||||||||| ||||
Sbjct 409 GAGCCTTTCCG-GTCTTCGTCACTTAAATCTCTCAAACAATGCCTTCAACGGTTCGTTTC 467
Query 574 CCGATGA-ACTCTCCTCTGGATTGGTGAATCTCCGTGTTCTTGACT-TATACAACAACAA 631
||||||| | | || |||||||| ||||||||||| |||||||| | | |||||||||||
Sbjct 468 CCGATGAGA-TTTCATCTGGATTAGTGAATCTCCGAGTTCTTGA-TGTCTACAACAACAA 525
Query 632 TTTAACCGGAGATTTACCGGTTTCAC-TCACTAATCTCACTCAGCTCCGTCATCTTCACC 690
| |||||||||||||||| ||||| | |||| ||||| ||||||||||| ||||||||||
Sbjct 526 TCTAACCGGAGATTTACCTGTTTC-CGTCACCAATCTGACTCAGCTCCGGCATCTTCACC 584
Query 691 TCGGTGGGAATTACTTCTCCGGCAAA-ATCCCGGCGACGTACGGAACCTGGCCTGTTCTC 749
| |||||||| |||||| | || ||| |||||| | ||||||||| |||||| ||| |
Sbjct 585 TGGGTGGGAACTACTTCGCTGG-AAAGATCCCGCCTTCGTACGGAAGCTGGCCAGTTATT 643
Query 750 GAATACTTAGCGGTTTCCGGTAACGAGCTAACCGGTAAAATCCCTCCGGAGATCGGAAAC 809
|| |||||||| |||||||| |||||||| ||| ||||||||||| ||||||||||||
Sbjct 644 GAGTACTTAGCTGTTTCCGGCAACGAGCTCGTCGGAAAAATCCCTCCAGAGATCGGAAAC 703
Query 810 CTAACGACTCTTCGTGAACTTTACATCGGATATTACAACGCTTTTGAAAATGGTCTTCCA 869
|||| |||||| || || ||||||||||| || ||||||||||| ||| | ||||||||
Sbjct 704 CTAAAGACTCTCCGGGAGCTTTACATCGGCTACTACAACGCTTTCGAAGACGGTCTTCCT 763
Query 870 CCGGAGATTGGAAATTTATCAGAGCTTGTTC-GGTTCGACGCTGCTAATTGTGGTTTAAC 928
|| ||||| ||||||||||| ||||| | || | |||||||| |||||||| || |||||
Sbjct 764 CCAGAGATCGGAAATTTATCGGAGCTAG-TCAGATTCGACGCCGCTAATTGCGGATTAAC 822
Query 929 CGGAGAGATTCCACCGGAGATTGGGAAGCTTCAGAAGCTAGATACGTTGTTTCTT-CAAG 987
||| |||||||| |||||||| |||||||||||||| || |||||| | |||||| ||||
Sbjct 823 CGGTGAGATTCCGCCGGAGATCGGGAAGCTTCAGAAACTCGATACGCT-TTTCTTGCAAG 881
Query 988 TAAACG-CATT-TACAGGGACAATAACTCAAGAGCTGGGATTGATTTCAAGCTTGAAATC 1045
| || | | || | | || | ||||| ||||| ||| | |||| |||||||||||
Sbjct 882 TGAATGTC-TTCT-CCGGTCCGTTAACTTTGGAGCTAGGAACGCTTTCGAGCTTGAAATC 939
Query 1046 GATGGATCTGTCTAACAATATGTTTACCGGCGAGATTCCGA-CGAGTTTTTCACAGCTGA 1104
|||||| |||||||||| ||||| ||||| |||||||| | |||| || || || |||
Sbjct 940 AATGGATTTGTCTAACAACATGTTCACCGGAGAGATTCC-AGCGAGATTCGCAGAGTTGA 998
Query 1105 AGAACT-TAACGCTTTTGAATCTCTTCAGGAATAAGC-TCTACGGTGCTATACCTGAGTT 1162
|||| | | |||||||||||||||||||| || || | || |||| | ||||| |||||
Sbjct 999 AGAA-TCTCACGCTTTTGAATCTCTTCAGAAACAAACTTC-ACGGCGAGATACCAGAGTT 1056
Query 1163 CATCGGTGAAATGCCGGAGCTTGAAGTGTTGCAGCTTTGGGAGAACAATTTCACTGGTAG 1222
|||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1057 CATCGGAGAATTGCCGGAGCTTGAAGTGTTACAGCTTTGGGAGAACAATTTCACCGGAAG 1116
Query 1223 TATTCCTCAGAAATTGGGGGAAAATGGTAGATTAGT-GAT-TC-TTGATCTCTCTTCGAA 1279
|| || |||||||||||||| || |||| | | | || || | ||||||||||| ||
Sbjct 1117 CATCCCGCAGAAATTGGGGGAGAACGGTA-A--ACTCAATCTCGTCGATCTCTCTTCCAA 1173
Query 1280 CAAACTCACCGGAACTCTGCCGCCGAATATGTGTTCTGGTAACCGGTTA-ATGACGTTAA 1338
|||||||||||||||| | |||||||| ||||| || |||||| |||| | || ||||
Sbjct 1174 CAAACTCACCGGAACTTTACCGCCGAACATGTGCTCCGGTAACAAGTTAGA-AACTTTAA 1232
Query 1339 TCACTCTTGGCAAC-TTCTTGTTTGGTTCAATACCGGATTCGCTTGGTAAATGTGAGTCT 1397
|||||||||| ||| ||| | ||||||||||| || ||||| ||||| ||||||||||||
Sbjct 1233 TCACTCTTGGAAACTTTC-TCTTTGGTTCAATCCCTGATTCTCTTGGCAAATGTGAGTCT 1291
Query 1398 CTGACCCGGATCCGGATGGGTGAGAATTTCCTTAACGGGTCGATTCC-AAAGGAGCTCTT 1456
||||||||||||| ||||||||||||||||| |||||||| || || ||||| | ||
Sbjct 1292 TTGACCCGGATCCGAATGGGTGAGAATTTCCTAAACGGGTCAATCCCTCAAGGA-TTATT 1350
Query 1457 CGGGTTACCTAAATTATCTCAAGTGGAGCTCCAAGACAATTACCT-TACCGGAGAGTTGC 1515
||| ||||| |||||| ||||||||||||||||||| ||||| || | ||||||| || |
Sbjct 1351 CGGATTACCCAAATTAACTCAAGTGGAGCTCCAAGATAATTATCTCT-CCGGAGAATTAC 1409
Query 1516 CAATAAGCGGAGGAGGAGTCTCTGGT-GACCTTGGTCAGATTAGTCTT-TCTAATAACCA 1573
| | || ||||| ||||| || | || |||||||| ||| || || || || ||
Sbjct 1410 CGGT-TGC--CGGAGGTGTCTC-CGTCAATCTAGGTCAGATCAGT-TTATCAAACAATCA 1464
Query 1574 GCTCTCTGGTTCATTACCTGCAGCTATTGGAAACTTGTCCGGTGTTCAAAAACTACTTCT 1633
|||||| ||| |||||||| | || || |||||||| |||| ||||| ||||| |||||
Sbjct 1465 GCTCTCAGGTCCATTACCTCCGGCGATCGGAAACTTCACCGGCGTTCAGAAACTTCTTCT 1524
Query 1634 TGATGGTAACAAGTTCTCTGGTTCGATTCCTCCCGAGATTGGGAGGCTTCAGCAGCTATC 1693
|||||| ||||||||| ||| |||||||| | ||| | |||| |||||||||||| ||
Sbjct 1525 TGATGGAAACAAGTTCGAAGGTCCGATTCCTTCGGAGGTAGGGAAGCTTCAGCAGCTCTC 1584
Query 1694 TAAG-TTGGATTTTAGCCACAATC-TGTTCTCCGGTCGGATCGCACCGGAGATCAGTCGT 1751
||| || ||||| |||||||| | ||||||||||||| ||||| ||||||||||| |||
Sbjct 1585 GAAGATT-GATTTCAGCCACAA-CTTGTTCTCCGGTCGAATCGCGCCGGAGATCAGCCGT 1642
Query 1752 TGTAAGCTGC-TAACGTTTGTTGATCTTAGCCGTAATGAGCTCTCAGGTGATATTCCTAA 1810
|| ||||| | |||| ||||||||||| || | || |||||||| ||||| || || ||
Sbjct 1643 TGCAAGCT-CTTAACTTTTGTTGATCTGAGTAGAAACGAGCTCTCCGGTGAAATCCCAAA 1701
Query 1811 TGA-ACTCACAGGTATGAAGAT-CTTGAATTACTTGAATCTTTCAAGAAACCATCTCGTT 1868
||| | |||| ||||||||||| | |||||||||||||||| || |||||| |||| |||
Sbjct 1702 TGAGA-TCACTGGTATGAAGATAC-TGAATTACTTGAATCTGTCGAGAAACAATCTGGTT 1759
Query 1869 GGTTCCATACCT-GTGACGATAGCATCAATGCAGAGTTTGACATCGGTTGATTTCTCTTA 1927
|| || || ||| || |||| | ||||||||||| || ||||| |||||||||||||
Sbjct 1760 GGATCAATCCCTGGT-TCGATCTCGTCAATGCAGAGCTTAACATCACTTGATTTCTCTTA 1818
Query 1928 CAACAATCTCTCCGGTTTAGTTCCCAGCACTGGACAGTTTAGTTACTTCAATTACACATC 1987
|||||||||||||||||| ||||| |||||||||| || ||||||||||| ||||||||
Sbjct 1819 CAACAATCTCTCCGGTTTGGTTCCGGGCACTGGACAATTCAGTTACTTCAACTACACATC 1878
Query 1988 GTT-TGTGGGTAACT-CTCATCTTTGTGGTCCGTAT-TTGGGTCC-T-T---G-C---G- 2034
||| | ||||||| | || |||| |||||||| ||| || ||||| | | | | |
Sbjct 1879 GTTCT-TGGGTAA-TCCTGATCTCTGTGGTCCTTATCTT-GGTCCTTGTAAAGACGGTGT 1935
Query 2035 -GC-AAAGGAACTCACCAGTCTCAT-GTCAA--ACCTTTATCTGCTACTACGAAACTGTT 2089
|| |||||| |||||||| |||| || || ||||||||| ||| ||| ||| || ||
Sbjct 1936 TGCTAAAGGAGCTCACCAGAGTCATAGTAAAGGACCTTTATCAGCTTCTATGAAGCTATT 1995
Query 2090 ACTCGTCCTTGGATTGCTCTTTTGTTCGATGGTGTTTGCTATAGTGGCCATAATCAAAGC 2149
|||||||||||| | ||| |||||||||| | || || |||| || |||||||||||
Sbjct 1996 GCTCGTCCTTGGACTACTCGTTTGTTCGATTGCATTCGCGGTAGTAGCTATAATCAAAGC 2055
Query 2150 TCGGTCCTTGCGAAATGCGAGTGAAGCCA-AGGCATGGAGATTGACTGCTTTCCAGAGGC 2208
| | || ||| ||| ||||| | || || ||| ||||| || || || |||||||| |
Sbjct 2056 TAGATCATTGAAAAAGGCGAGCG-AGTCACGGGCTTGGAGGTTAACAGCATTCCAGAGAC 2114
Query 2209 TAGACTTCACTTGTGACGATGTCTTGGACTCTCTCAAGGAAGACAACATCATCGGTAAAG 2268
|||||||||| ||||||||||||||||| |||||||| ||||||||||| || || ||||
Sbjct 2115 TAGACTTCACATGTGACGATGTCTTGGATTCTCTCAAAGAAGACAACATTATAGGCAAAG 2174
Query 2269 GCGGTGCTGGGATTGTCTACAAAGGCACT-ATGCCTAAAGGCGACCTAGTCGCGGTCAAA 2327
| || ||||| |||||||| |||||| | |||||||| || || |||||||||||||||
Sbjct 2175 GAGGAGCTGGTATTGTCTATAAAGGC-GTAATGCCTAATGGTGATCTAGTCGCGGTCAAA 2233
Query 2328 CGATTGGCTACAATGTCCCATGGATCTTCCCACGATCACGGGTTCAACGCCGAGATTCAG 2387
|| | ||| ||||||||| |||||||||||| |||||||| |||||||| ||||||||
Sbjct 2234 AGACTCGCTGCAATGTCCCGTGGATCTTCCCATGATCACGGATTCAACGCAGAGATTCAA 2293
Query 2388 ACGC-TAGGTAGAATCAGACACAGACACATCGTGAGACTGCTCGGTTTTTGCTCCAACCA 2446
|| | |||| || || |||||||||||||| ||||| || |||||||||||||| |||||
Sbjct 2294 AC-CTTAGGAAGGATAAGACACAGACACATAGTGAGGCTTCTCGGTTTTTGCTCTAACCA 2352
Query 2447 CGAAACGAATCTCCTTGTGTACGAGTACATGCCTAATGGTAGCCTTGGAGAGGTTCTTCA 2506
|||||| ||||| || || || |||||||||||||||||||| || || ||||| |||||
Sbjct 2353 CGAAACAAATCTACTAGTCTATGAGTACATGCCTAATGGTAGTCTCGGTGAGGTGCTTCA 2412
Query 2507 TGGAAAGAAAGGAGGTCATTTACATTGGAACACACGTTATAAGATAGCTCTTGAAGCAGC 2566
|| ||||||||||| || || |||||| |||||||||| ||||| ||||||||||| ||
Sbjct 2413 CGGTAAGAAAGGAGGACACTTGCATTGGGACACACGTTACAAGATTGCTCTTGAAGCTGC 2472
Query 2567 CAAGGGTCTTTGCTATCTCCACCATGATTGTTCCCCGTTGATCGTCCATAGAGATGTTAA 2626
|| || || || ||||| || || |||||||| || ||||| || || |||||||| ||
Sbjct 2473 TAAAGGACTCTGTTATCTTCATCACGATTGTTCTCCATTGATTGTTCACAGAGATGTCAA 2532
Query 2627 ATCCAACAACATCCTCCTCGATTCCAACTTCGAAGCTCATGTCGCCGACTTTGGTCTCGC 2686
||| |||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||
Sbjct 2533 ATCAAACAACATCCTCCTCGATTCAAACTTTGAAGCTCATGTTGCTGACTTTGGTCTCGC 2592
Query 2687 CAAGTTCCTCCAAGATTCCGGTACTTCTGAATGTATGTCCGCAATTGCCGGCTCCTACGG 2746
|| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 2593 TAAATTCCTTCAAGATTCCGGTACTTCTGAATGTATGTCTGCAATCGCTGGCTCTTACGG 2652
Query 2747 CTACATAGCTCCAGAGTACGCGTATACATTGAAGGTAGATGAGAAGAGCGATGTGTATAG 2806
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2653 CTACATAGCTCCAGAGTATGCGTATACGTTGAAGGTAGATGAGAAGAGCGATGTGTATAG 2712
Query 2807 TTTCGGTGTTGTTCTTCTAGAACTCATCACCGGGAA-AAAACCCGTCGGAGAATTTGGCG 2865
||||||||| |||||| | |||||| ||||||| || |||||| |||||||||||||| |
Sbjct 2713 TTTCGGTGTGGTTCTTTTGGAACTCGTCACCGG-AAGAAAACCTGTCGGAGAATTTGGTG 2771
Query 2866 ACGGCGTTGATATTGTTCAATGGGTGAG-AAGCATGACGGATTCAAATAAAGATT-GTGT 2923
|||| || || ||||| |||||||| | || ||||| ||||| || ||||||| | ||
Sbjct 2772 ACGGTGTCGACATTGTGCAATGGGTTCGTAAA-ATGACTGATTCGAACAAAGATTCG-GT 2829
Query 2924 GCTCAAAGTAATCGATCTTAGACTCTCTTC-AGTTCC-AGTTCACGAGGTAACACACGTC 2981
|| |||||| | |||| ||||| || || | |||| | |||| || || || ||||||
Sbjct 2830 TCTGAAAGTATTGGATCCGAGACTTTCATCGA-TTCCGA-TTCATGAAGTGACGCACGTC 2887
Query 2982 TTCTACGTTGCGTTGCTCTGCGTTGAAGAACAAGCGGTGGAGAGGCCGACGATGCGTGAA 3041
||||| || ||| ||||||| || ||||||||||| || ||||||||||| ||| | |||
Sbjct 2888 TTCTATGTCGCGATGCTCTGTGTCGAAGAACAAGCTGTTGAGAGGCCGACTATGAGGGAA 2947
Query 3042 GTCGTTCAGATTCTCACTGAGATCCC 3067
|| |||||||||||||||||||||||
Sbjct 2948 GTTGTTCAGATTCTCACTGAGATCCC 2973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130347187525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5