BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G49780.1

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937805 jgi|Araly1|937805|scaffold_501996.1                        403    5e-112


> Ahg937805 jgi|Araly1|937805|scaffold_501996.1
Length=284

 Score =  403 bits (218),  Expect = 5e-112
 Identities = 257/275 (93%), Gaps = 6/275 (2%)
 Strand=Plus/Plus

Query  61   TGCAAATCAGTATGGGTAAGTTCACAACCATTTTCATCATGGCTCTCCTTCTTTGCTCTA  120
            |||||||||  |||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct  12   TGCAAATCACAATGGCTAAGTTCACAACCATTTTCATCATGGCTCTCCTTCTTTGCTCAA  71

Query  121  CGCTAACCTACGCAGCAAGGCTGACTCCGACGACAACCACCGCTT-TGTCCAGAGAAAAC  179
            | |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct  72   CACTAACCTACGCAGCAAGGCTGACTCCAACGACAACCACCGCTTCT-TCCAGAGAAAAC  130

Query  180  TCCGTCAAGGAAATTGAAGGAGACAAGGTTGAAGAAGAAAGCTGCA-ACGGAATTGGAGA  238
            |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||
Sbjct  131  TCCGTCAAGGAAATTGAAGGAGACAATGTTGAAGAAGAAAGCTGCATA-GGAATTGGAGA  189

Query  239  AGAAGAATGTTTGATAAGACGAAGCCTTGTTCTTCACACCGATTACATTTATACTCAGAA  298
            ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct  190  AGAAGAATGTTTGATAAGACGAAGCCTTGTTGTTCACACCGATTACATTTACACTCAGAA  249

Query  299  TCACAAGCCCTAAGTTTCT--GTATTAGAGCAATT  331
            |||||||| |||| |||||  ||||||||| ||||
Sbjct  250  TCACAAGCACTAAATTTCTATGTATTAGAGTAATT  284



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15605635901


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5