BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49940.1 Length=1039 Score E Sequences producing significant alignments: (Bits) Value Ahg937824 jgi|Araly1|937824|scaffold_502015.1 1000 0.0 > Ahg937824 jgi|Araly1|937824|scaffold_502015.1 Length=752 Score = 1000 bits (541), Expect = 0.0 Identities = 709/784 (90%), Gaps = 36/784 (5%) Strand=Plus/Plus Query 104 TAAAAG-ATTTCTGAAAATAATGAGTTGCAATGGTTGTCGAGTTCTACGAAAAGGTTGCA 162 |||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1 TAAAAGAATTTCTGATAATTATGAGTTGCAATGGTTGTCGAGTTCTTCGAAAAGGTTGCA 60 Query 163 GTGAGAATTGCATCCTCCGTCCATGTATTCAATGGATCGAATCACCTGAAGCTCAAGGCC 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTGAGAATTGCATCCTCCGTCCATGTATTCAATGGATCGAATCACCTGAAGCTCAAGGCC 120 Query 223 ACGCCACCGTCTTCGTCGCTAAGTTCTTCGGCCGTGCCGGTTTAATGTCTTTCATCTCCG 282 |||||||||||||||| ||||||||||| |||||||||||| | |||||||||||||||| Sbjct 121 ACGCCACCGTCTTCGTTGCTAAGTTCTTTGGCCGTGCCGGTCTCATGTCTTTCATCTCCG 180 Query 283 CCGTACCGGAATCTCAATGCCCTGCTTTGTTTCAGTCTTTGCTATACGAAGCTTGTGGGA 342 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 181 CCGTACCGGAATCTCAATGCCCTGCTTTGTTTCAGTCTTTGCTCTACGAAGCTTGTGGAA 240 Query 343 GAACTGTGAATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACGGGGAATTGGAATGTTT 402 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| Sbjct 241 GAACTGTGAATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACTGGGAACTGGAATATTT 300 Query 403 GTCAAGCGGCGGTTGAGACGGTGCTTCGTGGTGGTTCTTTAAAACCAATACCGGAGCTTC 462 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 301 GTCAAGCGGCGGTTGAGACGGTGCTTCGTGGTGGTTCTTTGAAACCGATACCGGAGCTTC 360 Query 463 TTAACGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGACGAAGCTTCGGAGATCT 522 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | Sbjct 361 TTAACGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGATGAAGCTTCTGAGATTT 420 Query 523 GTACGGAAATGTTGAATCTACGAAAAGCTGATGATTCCGGTGATCGGAACATTTATCATC 582 ||||||||||||||||||||||||||| ||||||||||||||| || || ||||| |||| Sbjct 421 GTACGGAAATGTTGAATCTACGAAAAGATGATGATTCCGGTGACCGTAATATTTACCATC 480 Query 583 ACTGCCGATTCTCAAGCTCTAGATCTAGATCAAGATCAACAGCTTCTCCGCCGAAACGGA 642 ||||||||||||||||||||||||| || ||||||| |||||||| |||||||||| Sbjct 481 ACTGCCGATTCTCAAGCTCTAGATC-----CA-GATCAACGGCTTCTCCACCGAAACGGA 534 Query 643 AACGATTATCGTCGGAACAACAACCTTCGTCGGAGCTTGATCTCTCTCTTATTCCTA-TT 701 |||| ||||||||||| | | || | || |||||| ||||||| || Sbjct 535 AACGGTTATCGTCGGAGC-------T-CG----ATCT--ATCTCTG----ATTCCTACTT 576 Query 702 TATCCGATTAAAACCTTGCCGTTTAAGGAAGATACACCGTCGATGTACTCGGAGGAGTCT 761 | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 577 T-TCCGATTAAAACGGTGCCGTTTAAGGAAGATACACCGTCGATGTATTCGGAGGAGTCT 635 Query 762 GTTACCACGGTTTCGTTTCAAAACAACAACGCCGGTGATCGGTACGTACGCTGCGGCGGA 821 || || ||||||||||||| | ||||||||||||||||||||||||||||| | | |||| Sbjct 636 GTCACGACGGTTTCGTTTCGAGACAACAACGCCGGTGATCGGTACGTACGC-G-G-CGGA 692 Query 822 GGAGGAGGAGGAGCAACGACAAAGTTGCTCAATCTCTTCGCTTGAACGGCGTCGTTTTTG 881 ||||||| | | | || ||||||||||||| || ||||||| |||||||||||||||| Sbjct 693 GGAGGAG-A--A--A-CGGCAAAGTTGCTCAACCTTTTCGCTTAAACGGCGTCGTTTTTG 746 Query 882 TTAT 885 |||| Sbjct 747 TTAT 750 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38656637838 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5