BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50000.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485358 jgi|Araly1|485358|fgenesh2_kg.5__1350__AT3G50000.1 2109 0.0
> Ahg485358 jgi|Araly1|485358|fgenesh2_kg.5__1350__AT3G50000.1
Length=1393
Score = 2109 bits (1142), Expect = 0.0
Identities = 1321/1402 (94%), Gaps = 33/1402 (2%)
Strand=Plus/Plus
Query 1 ACCGCGGGAGAGTGCACCGAATGGTTACATGCACCTAATCTTCTTCTTCTCCTACTTTCT 60
||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCGCGGGAGAGTTCACTGAATGATTACATGCACCTAATCTTCTTCTTCTCCTACTTTCT 60
Query 61 TCGACGGTACCTGTTGTTATTGTGCGCCATCTTGATCTTACGTGCGCCGTTGGCGCATTC 120
||||| || | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TCGAC-GT--TTCTTGTTATTGTGCGCCATCTTGATCTTACGTGCGCCAACGGCGCATTC 117
Query 121 TCTTATACCACCATTAACGTGCGTCAACACCGGAACCGTTGAATCAGACGTTACTGGTAT 180
|| ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 118 TCCTATACCACCGTTAACGTGCGTCACCACCGGAACCGTTGAATCAGACGTTTCTGGTAT 177
Query 181 CAGGTTCGATCGTTGCCTCGATACCGATTCTCTCGCCAAGATCTCTCTTTCCACCGT--- 237
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 178 CAGGTTCGATCGTTGCCTCGATACCGATTCTCTCGCCGAGATCTCTCTTTCCTCCGTCAC 237
Query 238 -----C-ATGTCGAAAGCTCGTGTTTATACCGATGTTAACGTGATCCGACCTAAGGATTA 291
| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 238 AGGAGCGATGTCGAAAGCTCGTGTGTATACCGATGTTAACGTGATTCGACCTAAGGATTA 297
Query 292 TTGGGATTACGAATCTCTCAATGTTCAGTGGGGGGAGCAAGATGATTACGAGGTAGTGAG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTGGGATTACGAATCTCTCAATGTTCAGTGGGGGGAGCAAGATGATTACGAGGTAGTGAG 357
Query 352 GAAGGTGGGGAGAGGGAAATACAGTGAGGTTTTTGAGGGGATTAACATGAATAACAATGA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 358 GAAGGTGGGGAGAGGGAAATACAGTGAGGTTTTTGAGGGGATTAACATGAATAGCAACGA 417
Query 412 GAAGTGTATTATCAAGATTCTCAAGCCTGTTAAGAAGAAGAAGATTAGAAGGGAGATTAA 471
|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 418 GAAGTGCATTATCAAGATTCTCAAGCCTGTTAAGAAGAAGAAGATTCGAAGAGAGATTAA 477
Query 472 AATACTTCAGAATCTTTGTGGAGGGCCAAATATTGTAAAGCTGCTTGATGTTGTCAGAGA 531
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 478 AATACTTCAGAATCTCTGTGGAGGGCCGAATATTGTCAAGCTGCTTGATGTTGTCAGAGA 537
Query 532 TCAACACTCAAAAACGCCAAGCTTGATATTTGAGTATGTAAACAGCACAGACTTTAAGGT 591
||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 538 TCAACACTCAAAAACACCAAGCTTGATATTTGAGTATGTTAACAGTACTGACTTTAAGGT 597
Query 592 TCTGTATCCAACATTGACTGATTATGACATTCGCTACTACATCTATGAGCTGTTGAAGGC 651
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 598 TCTGTATCCAACATTGACTGATTATGACATCCGATACTACATCTATGAGCTGTTGAAGGC 657
Query 652 TTTGGACTTCTGCCACTCACAAGGAATAATGCACAGAGATGTCAAGCCACACAATGTCAT 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATTGGACTTCTGCCACTCACAAGGAATAATGCACAGAGATGTCAAGCCACACAATGTCAT 717
Query 712 GATCGACCATGAGCTGCGCAAACTTCGCCTAATAGATTGGGGTCTCGCTGAGTTTTATCA 771
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 718 GATCGACCATGAGCTGCGCAAACTTCGCCTTATAGATTGGGGTCTCGCTGAGTTTTATCA 777
Query 772 TCCTGGAAAAGAGTACAACGTCCGTGTGGCCTCAAGATACTTCAAAGGTCCCGAACTTCT 831
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 778 TCCTGGAAAAGAGTACAACGTCCGCGTGGCCTCAAGATACTTCAAGGGTCCCGAACTTCT 837
Query 832 AGTTGATTTACAGGACTATGACTATTCCTTGGACATGTGGAGCCTCGGTTGCATGTTTGC 891
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 838 AGTGGATTTACAGGACTATGACTATTCCTTGGACATGTGGAGCCTTGGTTGCATGTTTGC 897
Query 892 TGGGATGATATTCCGCAAGGAACCTTTCTTCTATGGCCATGACAACCAGGATCAGCTCGT 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGGGATGATATTCCGCAAGGAACCTTTCTTCTATGGCCATGACAACCAGGATCAGCTCGT 957
Query 952 CAAAATTGCCAAGGTACTCGGAACTGATGAATTGAATGCATATCTGAATAAGTATCAGTT 1011
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 958 CAAAATTGCCAAGGTACTTGGAACCGATGAATTGAATGCATATCTGAATAAGTATCAGTT 1017
Query 1012 AGAACTTGATACTCAACTAGAGGCACTTGTTGGGAGACATAGCAGGAAGCCTTGGTCCAA 1071
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AGAACTTGATGCTCAACTAGAGGCACTTGTTGGGAGACATAGCAGGAAGCCTTGGTCCAA 1077
Query 1072 ATTCATCAACGCTGACAATAGGCATTTGGTCTCACCTGAGGCGATTGATTATTTGGACAA 1131
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1078 ATTCATCAACGCCGACAATAGGCATTTGGTCTCACCTGAGGCGATTGATTACCTGGACAA 1137
Query 1132 GCTGCTCCGGTATGATCATCAAGACAGATTAACTGCAAAAGAAGCAATGGCTCATCCCTA 1191
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1138 GCTACTCCGGTATGATCATCAAGACAGATTAACCGCAAAAGAAGCAATGGCTCATCCCTA 1197
Query 1192 TTTCGCTCAAGTCAGGGCAGCAGAAAGCAGCAGAATGAGGACTCAATAGAGATGTCTCGG 1251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1198 TTTCGCTCAAGTCAGGGCAGCAGAAAGCAGCAGAATGAGGACTCAATAGAGATGTCTCTG 1257
Query 1252 CCGATTTTTGTTTCTTCTTCTTCTCCAGTGTGCTCTTTTGTTGTTTACTAA---TACATT 1308
||||||| |||||||||||| | | | ||||||||||||||||||||||| ||||||
Sbjct 1258 TCGATTTT-GTTTCTTCTTCT-C-CAA-TGTGCTCTTTTGTTGTTTACTAAAAATACATT 1313
Query 1309 TTCATATCCATATGGATTTCTTTT-ATAATGTCG-A---A----A--TTATGGATTTATA 1357
|||||||||||||||||||||||| | ||||||| | | | |||||||||| ||
Sbjct 1314 TTCATATCCATATGGATTTCTTTTGA-AATGTCGCAGTTATTTTAAATTATGGATTTCTA 1372
Query 1358 AATATGAGAA-TTCTTATTACT 1378
|||||||||| || ||||||||
Sbjct 1373 AATATGAGAACTT-TTATTACT 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5