BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50060.1 Length=1137 Score E Sequences producing significant alignments: (Bits) Value Ahg485364 jgi|Araly1|485364|fgenesh2_kg.5__1356__AT3G50060.1 1062 0.0 > Ahg485364 jgi|Araly1|485364|fgenesh2_kg.5__1356__AT3G50060.1 Length=978 Score = 1062 bits (575), Expect = 0.0 Identities = 785/876 (90%), Gaps = 56/876 (6%) Strand=Plus/Plus Query 41 AAAAGATCTGTTTCAATGGCGGATCGTGTTAAAGGTCCATGGAGTCAAGAAGAAGATGAG 100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAGATCTGTTTCAATGGCGGATCGTGTTAAAGGTCCATGGAGTCAAGAAGAAGATGAG 60 Query 101 CAGCTACGAAGGATGGTTGAGAAATACGGACCGAGGAATTGGTCTGCGATTAGCAAATCG 160 |||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 61 CAGCTACGTAGGATGGTGGAGAAATACGGTCCGAGGAATTGGTCGGCGATTAGCAAATCG 120 Query 161 ATTCCAGGTCGATCTGGTAAATCGTGTAGATTACGTTGGTGTAATCAGTTATCTCCGGAG 220 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 ATTCCAGGTCGATCTGGTAAATCGTGTAGATTACGGTGGTGTAATCAGTTATCTCCGGAG 180 Query 221 GTTGAGCATCGTCCTTTCTCGCCGGAGGAAGATGAGACTATTGTAACCGCCCGTGCTCAG 280 |||||||| |||||||||||||||||||| ||||||||||||||||| || |||||| || Sbjct 181 GTTGAGCACCGTCCTTTCTCGCCGGAGGAGGATGAGACTATTGTAACGGCTCGTGCTAAG 240 Query 281 TTTGGTAACAAGTGGGCGACGATTGCTCGTCTTCTTAACGGTCGTACGGATAACGCCGTT 340 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 241 TTTGGTAACAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGATAACGCCGTT 300 Query 341 AAAAATCACTGGAACTCTACGCTTAAGAGGAAATGCAGCGGAGGTGTGGCGGT--T-ACG 397 ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 301 AAAAATCACTGGAACTCGACGCTTAAGAGGAAATGCAGCGGAGGTGTGGCGGCGGTGACG 360 Query 398 ---ACG--G-TGACGGAGACGGAGGAAGATCAGGATCGGCCGAAGAAGAGGAGATCTGTT 451 ||| | |||||||||||||||| || || ||||||||||||||||||||||||| Sbjct 361 GCGACGACGGTGACGGAGACGGAGGAGGAGGAGTATCGGCCGAAGAAGAGGAGATCTGTG 420 Query 452 AGCTTTGATTCTGCTTTTGCTCCGGTGGATACTGGATTGTACATGAGTCCTGAGAGTCCT 511 |||||||||||||||||||||||||| | | || || |||| || |||| Sbjct 421 AGCTTTGATTCTGCTTTTGCTCCGGT-----C-G-AT---AC-TGAG-----AG--TCCT 462 Query 512 AACGGAATCGATGTTAGTGATTCTAGCACGATTCCGTCACCGTCGTCTCCTGTTGCTCAG 571 |||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||| Sbjct 463 AACGGATTCGATGTTAGTGATTCAAGCACGGTTCCGTCTCCGTCGTCTCCTGTTGCTCAG 522 Query 572 CTGTTTAAACCAATGCCGATTTCCGGCGGTTTTACGGTGGTTCCGCAGCCGTTACCGGTT 631 || |||||||||||||||||||||||||| | ||| ||||||||| Sbjct 523 CTTTTTAAACCAATGCCGATTTCCGGCGG------G------CCG------TTACCGGTT 564 Query 632 GAAATGTCTTCGTCTTCGGAGGATCC-ACCTACTTCGTTGAGTTTGTCACTACCTGGAGC 690 |||||||||||||||||||||||||| || || |||||||||||||||||||||||||| Sbjct 565 GAAATGTCTTCGTCTTCGGAGGATCCGACA-ACGTCGTTGAGTTTGTCACTACCTGGAGC 623 Query 691 TGAGAACACGAGTTCGAGCCATAACAATAACAACAACGCGTTGATGTTTCCGAGATTTGA 750 ||||||||||||||||| | | | ||| |||||||||||||||||||||||||||||||| Sbjct 624 TGAGAACACGAGTTCGAACTACATCAACAACAACAACGCGTTGATGTTTCCGAGATTTGA 683 Query 751 GAGTCAGATGAAGATTAATGTAGAGGAGAGAGGAG-A--AG--G-ACGTAGAGGTGAGTT 804 ||||||||||||||||||||||||||||||||||| | || | ||||||||||||||| Sbjct 684 GAGTCAGATGAAGATTAATGTAGAGGAGAGAGGAGGAGGAGAAGGACGTAGAGGTGAGTT 743 Query 805 TATGACGGTGGTGCAGGAGATGATAAAAGCTGAAGTGAGGAGTTACATGGCGGAAATGCA 864 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 744 TATGACGGTGGTGCAAGAGATGATTAAAGCTGAAGTGAGGAGTTACATGGCGGAGATGCA 803 Query 865 GAAAACAAGTGGTGG---ATTCGTCGTCGGAGGTTT 897 |||||| |||||||| |||||||||||||||||| Sbjct 804 GAAAACGAGTGGTGGTGGATTCGTCGTCGGAGGTTT 839 Score = 91.6 bits (49), Expect = 1e-17 Identities = 54/56 (96%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 1044 aaaacaaaaTGTACAGAGGAATTAAAATTTCTATGGAATAATCTTAAATCTCAAAT 1099 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 924 AAAA-AAAATGTACAGATGAATTAAAATTTCTATGGAATAATCTTAAATCTCAAAT 978 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42392683704 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5