BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50090.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897896 jgi|Araly1|897896|Al_scaffold_0005_1862 1243 0.0
Ahg323586 jgi|Araly1|323586|fgenesh1_pm.C_scaffold_5001130 320 1e-86
> Ahg897896 jgi|Araly1|897896|Al_scaffold_0005_1862
Length=996
Score = 1243 bits (673), Expect = 0.0
Identities = 875/971 (90%), Gaps = 20/971 (2%)
Strand=Plus/Plus
Query 9 TTTGCAAGCTATGCGTCTCCGCGAAGCCAATCGTCTCATGATTGCAAAGTTCAAGAAAGA 68
|||||||||||||| | ||| ||||||||||||| ||||||| |||||||||| ||||
Sbjct 21 TTTGCAAGCTATGC--AT-CGCCAAGCCAATCGTCTTATGATTGAAAAGTTCAAGCAAGA 77
Query 69 ATCTC-CGGCTAATGACTCTCCTGAACAGAGGCTAGTTCGATTGACCAATGAGAATCCGC 127
||||| | | || ||| ||||||| ||||||||| ||||||||||| |||| ||||||
Sbjct 78 ATCTCATGAC-AAAGACACTCCTGAGCAGAGGCTAATTCGATTGACCGTTGAGCATCCGC 136
Query 128 AATACAATGTCGACTTTTTGTTTCATTCATACTCCAAGGACTGGTTTGTATCCGATGTTG 187
||||| |||| |||||| |||||| ||| |||||||||| |||||||||||||||||||
Sbjct 137 AATACTGTGTCTACTTTTCGTTTCACTCACACTCCAAGGATTGGTTTGTATCCGATGTTG 196
Query 188 GAATGAAAATGTCAAATGTGATGATTCCAAACCAAATGCTAGCTCTTGACTGTGAAATGG 247
||| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 197 GAACGAAAATGTCGAATGTGATGATTTCAAACCAAATGGTAGCTCTTGACTGTGAAATGG 256
Query 248 TTCTATGTGAAGATGGGACAGAGGGTGTGGTTAGAGTTGGCGCTGTTGACCGCAATTTAA 307
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TTCTTTGTGAAGATGGAACCGAGGGTGTGGTTAGAGTTGGCGCTGTTGACCGCAATTTAA 316
Query 308 AGGTGATCCTTGACGAATTTGTGAAACCACACAAACCTGTGGTCGACTATAGGACAGCTA 367
||||||||||||| |||||||||||||| ||||||||||| || |||||||||||| |||
Sbjct 317 AGGTGATCCTTGATGAATTTGTGAAACCGCACAAACCTGTTGTTGACTATAGGACAACTA 376
Query 368 TTACTGGAGTTACTGCTGAAGATGTCCAA-AAAGCCACTCTCTC-TCTGGTGGATATTCA 425
|||| ||||||||||||||||||||| | ||||| |||||||| | |||| ||||| ||
Sbjct 377 TTACAGGAGTTACTGCTGAAGATGTC-ATCAAAGCTACTCTCTCGT-TGGTTGATATACA 434
Query 426 GGAAAAATTGAGGCCGTTTCTTTCTGCTGGTGCAATTTTGATAGATCATCCCATAGTGAT 485
|||||||||| |||||||||| ||| | ||| |||||||| ||| |||||||||||| ||
Sbjct 435 GGAAAAATTGCGGCCGTTTCTCTCTTCGGGTACAATTTTGGTAGGTCATCCCATAGTAAT 494
Query 486 TGATACTTCACTAGTATTTAAGTATCCTAATTCA-CGAAAGCTAAGAAGACCTTCTCTTA 544
|||||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct 495 TGATACTTCACTTGTATTTAAGTATCCTAATTCAAC-AAAGCGAAGAAGACCTTCTCTTA 553
Query 545 ATACCCTTTGCATGTCTGTGTTGGGATACGAAGTCCAAAAGGCCGGTGTTTCTCATCACT 604
||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 554 ATACCCTTTGCATGTCTGTGTTGGGGTACGAAGTCCAAAAGACAGGTGTTTCTCATCACT 613
Query 605 GCGTACACGATGCAGCCGCTGCGATGAAACTTGCACTTGCTGTTATAAAGAAAAGAGTTG 664
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 614 GCGTACACGATGCAGTCGCTGCGATGAAACTTGCACTTGCTGTTATAGAGAAAAGAGTTG 673
Query 665 ACACAACAATCACATTAACTAAAGAG--GC------C-GAGAAATCAAGACTCTTTCTAC 715
|||||||||||||| ||||||||||| | | ||||||||||||||||||||||
Sbjct 674 ACACAACAATCACACTAACTAAAGAGATGGTGGAGGCTGAGAAATCAAGACTCTTTCTAC 733
Query 716 ATCGAATCCCTCACCATCTGTCATCTGAAGAGCTGAAGAAAGATCTTGCTCTAAAGTTTT 775
|| ||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||||
Sbjct 734 ATAGAATCCCTCACTTTCTGTCATCTGAAGAGCTGAAAAAAGATCTTTCTCAAAAGTTTT 793
Query 776 TTCCCAAAAACTTTACAATTGATGTTAAGCCAGCAAAAACACAGGGAGGTTATTATTGTG 835
|||||||||| |||||| ||||||||||||||||||||||||| |||||||| |||||||
Sbjct 794 TTCCCAAAAAGTTTACAGTTGATGTTAAGCCAGCAAAAACACAAGGAGGTTACTATTGTG 853
Query 836 CAGTTGTTATCTTTGGAAGCTCAGTAGAAGCAAATCAAGCATTTGAGAACGTTAATGGAT 895
|||||||| |||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 854 CAGTTGTTGTCTTCGGTAGCTCAGTAGAAGCAAATCAAGCATTTGAGAACATTAATGGAT 913
Query 896 ACAAAGAGACGGATTCATCGGGGCTGCCACAGAAACTCATTTCTTGTTCAATATCTACAT 955
|| |||| |||||||||||||||| |||||||||||||||||||||||||| | |||| |
Sbjct 914 ACCAAGAAACGGATTCATCGGGGCCGCCACAGAAACTCATTTCTTGTTCAAGAGCTACTT 973
Query 956 TTTATGTCCGT 966
||||| |||||
Sbjct 974 TTTATATCCGT 984
> Ahg323586 jgi|Araly1|323586|fgenesh1_pm.C_scaffold_5001130
Length=1230
Score = 320 bits (173), Expect = 1e-86
Identities = 328/401 (82%), Gaps = 18/401 (4%)
Strand=Plus/Plus
Query 82 GACTCTCCTGAACAGAGGCTAGTTCGATTGACCAATGAGAATCCGCAA-TA--CAATGTC 138
||| ||||||| | |||||||||||||||||||| |||| ||||| || || | | ||
Sbjct 277 GACACTCCTGAGCGGAGGCTAGTTCGATTGACCATTGAGCATCCG-AATTATTC-A-GTA 333
Query 139 GACTTTTTGTTTC-ATTCATACTCCAAGGACTGGTTTGTATCCGATGTTGGAATGAAAAT 197
||| | || ||| | ||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 334 GAC-TATTCATTCAAGCCATACTCTGAGGACTGGTTTGTATCCGATGTTGGAATGAAGAT 392
Query 198 GTCAAATGTGATG-ATTCCAAACCAA-ATGCTAGCTCTTGACTGTGAAATGGTTCTATGT 255
|||||| |||||| | || || | || ||| ||||| |||| ||||| |||||||| |||
Sbjct 393 GTCAAAGGTGATGCAATC-AA-CTAACATGGTAGCTGTTGATTGTGAGATGGTTCTTTGT 450
Query 256 GAAGATGGGACAGAGGGTGTGGTTAGAGTTGGCGCTGTTGACCGCAATTTAAAGGTGATC 315
||||||||||| |||||| | ||||||||||||||||| ||||| |||||||||||||
Sbjct 451 GAAGATGGGACTGAGGGTTTAGTTAGAGTTGGCGCTGTAGACCGTGATTTAAAGGTGATT 510
Query 316 CTTGACGAATTTGTGAAACCACACAAACCTGTGGTCGACTATAGGACAG-CTATTACTGG 374
||||| |||||||||||||| |||||| | | || ||||||||||||| | ||||| ||
Sbjct 511 CTTGATGAATTTGTGAAACCGGACAAACATATTGTTGACTATAGGACAGAC-ATTACAGG 569
Query 375 -AGTTACTGCTGAAGATGTCCAAAAAGCCACTCTCTCTCTGGTGGATATTCAGGAAAAAT 433
| |||||||||||||| || |||| || || |||||| ||| ||||| ||||||| |
Sbjct 570 GA-TTACTGCTGAAGATATCGAAAATGCTACACTCTCTGTGGCAGATATACAGGAAACGT 628
Query 434 TG-AGGCCGTTTCTTTCTGCTGGTGCAATTTTGATAGATCA 473
|| || || ||||||||| | ||| | |||||| ||| |||
Sbjct 629 TGCAGCCC-TTTCTTTCTACGGGTACGATTTTGGTAGGTCA 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5