BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50340.1 Length=1579 Score E Sequences producing significant alignments: (Bits) Value Ahg485385 jgi|Araly1|485385|fgenesh2_kg.5__1377__AT3G50340.1 2364 0.0 Ahg496899 jgi|Araly1|496899|fgenesh2_kg.8__2715__AT5G67020.1 828 0.0 > Ahg485385 jgi|Araly1|485385|fgenesh2_kg.5__1377__AT3G50340.1 Length=1469 Score = 2364 bits (1280), Expect = 0.0 Identities = 1414/1478 (96%), Gaps = 12/1478 (1%) Strand=Plus/Plus Query 1 TCTCTCTCGCCTATCATCTTTTTCCAGTTCGCTATCAGACATATTTGAAACCCCATAACT 60 |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1 TCTCTCTCGCCTATTATCTTTTT-CAGTTCGCTATCAGACATATCTGAAACCCCATAACT 59 Query 61 CATAAAGCTTCACTCTTTTCCACAATCTCTTACTCCAAAGTTTTCTTCTTTCCCCCCAAA 120 ||||||||||||||||||||||| |||||||||||||||||||| || || |||||| Sbjct 60 CATAAAGCTTCACTCTTTTCCAC-ATCTCTTACTCCAAAGTTTTGATC-TT-GTCCCAAA 116 Query 121 AAATTATAATGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCTG 180 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 117 AAAAAAAAATGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCGG 176 Query 181 GTCTCCGTCGTCTCTCTGCTCGCGCCGCCGCACCAACAACACCAACGGTTAGAAACAGTC 240 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 177 GTCTCCGTCGTCTCTCTGCTCGCGCCGCCGCACCAACGACTCCAACGGTTAGAAACAGCC 236 Query 241 TCGTCTCTTTCTCTTCTCTCGCCGATCAAGTAATCTCACACTTACACACTTCAAGGATCC 300 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 237 TCGTCTCTTTCTCATCTCTCGCCGAACAAGTAATCTCACACTTACACACTTCAAGGATCC 296 Query 301 AAGTCCAACCGGGTCTAACCGACTCCGAATTCGCTAGAGCAGAAGCAGAGTTTGCATTCG 360 |||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||| Sbjct 297 AAGTCCAACCGGGTCTAACCGACTCCGAATTCGCCAAAGCCGAAGCAGAGTTCGCATTCT 356 Query 361 CTTTTCCACCGGACCTCCGTGCTGTTCTCACCGCCGGTTTACCAGTCGGCGCCGGATTTC 420 |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 357 CTTTCCCACCGGACCTCCGTGCAGTTCTCACCGCCGGTTTACCAGTCGGCGCCGGGTTTC 416 Query 421 CAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTCAGAGCTATGATCGATCTTCCTATCG 480 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 417 CAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTTAGGGCTATGATCGATCTTCCTATCG 476 Query 481 CCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTCTGGAGCAAATCTTGGGGTTTAAGAC 540 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 477 CCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTTTGGAGCAAATCTTGGGGTTTAAGAC 536 Query 541 CATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATGCTCTCAAAAGAGCTCCTTTGA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 CATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATGCTCTCAAAAGAGCTCCTTTGA 596 Query 601 TGATACCAATCTTTGATCATTGCTATATTCCTTGTAACCCGTCTTTAGCGGGTAACCCGG 660 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 597 TGATACCAATCTTTGATCACTGCTATATTCCTTGTAACCCGTCTTTAGCGGGTAACCCGG 656 Query 661 TTTTTTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTTTCTGATTTCTTCG 720 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 657 TTTTTTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTATCTGATTTCTTCG 716 Query 721 AGCGTGAGTCTGTGTTTAGAGGGTCTGACACGTGTCCGGTTGTTTTAACGAAGCAGCGTT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 AGCGTGAGTCTGTGTTTAGAGGGTCTGACACGTGTCCGGTTGTTTTAACGAAGCAGCGTT 776 Query 781 CGGTGAGTGAGAAATCAGCCGGGTCGTCGTCGTCTTCTTCATCAAATTTTTCGAGAATGA 840 ||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||||| Sbjct 777 CGGTGAGTGAGAAATCAGCTGGGTCGTCGTCGTCTTCTTCGTCGAATTTTTCAAGAATGA 836 Query 841 GTTTAGATTCGGGTCGGGTTCACGGGTCGAGTACACCGAGATGGGTTGAGTTTTGGAGTG 900 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 GTTTAGATTCGGGTCAGGTTCACGGGTCGAGTACACCGAGATGGGTTGAGTTTTGGAGTG 896 Query 901 ACGCGGCGGTTGATCGTCGGAGGAGAAACTCTGCTTCTTCTATGTCGTCGTCACACTCTT 960 ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 ACGCGACCGTGGATCGTCGGAGGAGAAACTCTGCTTCTTCTATGTCGTCGTCACACTCTT 956 Query 961 CATCGCCGGAGAGATATTTAGATTTACCAAGATCCGAGACACCGAAATGGGTCGACGATT 1020 ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 957 CATCGCCGGAGAGATATCTAGAATTACCAAGATCCGAGACACCGAAATGGGTCGACGATT 1016 Query 1021 ACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGGAGCGAATCCGACGTTGATG 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 ACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGGAGCGAATCCGACGTTGATG 1076 Query 1081 ATATTGTACACGTGTCAGCATCTGGtttttttGAGGGTGAAATGGTAATTTTGGATAATC 1140 ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1077 ATATTGTCCACGTGTCAGCATCTGGTTTCTTTGAGGGTGAAATGGTAATTTTAGATAATC 1136 Query 1141 AAGCCGTTCTT-GATGCATTGCTTTTGAAAGCGGGTCGGTTCTCGGAGTCGCTCCGAAAA 1199 |||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 AAGCGGTT-TTAGATGCATTGCTTTTGAAAGCGGGTCGGTTCTCGGAGTCGCTCCGAAAA 1195 Query 1200 GCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTTTTGATTTTCGACCGGAGAAG 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 GCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTTTTGATTTTCGACCGGAGAAG 1255 Query 1260 GAGAAGAAACCGGTGAAGAAGCTATCTCCTGAACTTGTCCAACGAATCGGGAAACTTGCT 1319 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 GGGAAGAAACCGGTGAAGAAGCTATCTCCTGAACTTGTCCAACGAATCGGGAAACTTGCT 1315 Query 1320 GAGTCGGTTTCTCGGTCATGATTATTATTCCCCGATCGAGATTCTTTTCACTTTTAATTA 1379 ||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||||| Sbjct 1316 GAGTCGGTTTCTCGGTCATGATTATTA--CCC-GATCGAGATTCTTTAAACTTCTAATTA 1372 Query 1380 GACCTCAAAC-AATACGTTTATTAAAAACAACACACCATTAGATTTTAACGTTTTCAAAA 1438 ||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1373 CCCCTCAAAAGAATACATTTATTATAAA-AACACACCATTAGATTTTAACGTTTTCAAAA 1431 Query 1439 A-GTCTAAATATGTGTAATCTTGCATTCGTTATTAGAA 1475 | ||||||||||||||||||||||||| |||||||||| Sbjct 1432 AAGTCTAAATATGTGTAATCTTGCATTTGTTATTAGAA 1469 > Ahg496899 jgi|Araly1|496899|fgenesh2_kg.8__2715__AT5G67020.1 Length=1355 Score = 828 bits (448), Expect = 0.0 Identities = 986/1236 (80%), Gaps = 75/1236 (6%) Strand=Plus/Plus Query 129 ATGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCTGGTCTCCGT 188 |||||||||||||| ||||||||||||||| | | || |||||||| || |||||||| Sbjct 95 ATGGTCGACGTTGACCGGAGAATGACCGGTTTGACTCCGGCTCACGCAGCCGGTCTCCGC 154 Query 189 CGTCTCTCTGCTCGCGCCGCCGCACCAACAACACCAACGGTTAGAAACAGTCTCGTC--T 246 |||||||| |||||||||||||| ||| | || || | | | |||||||| | | || | Sbjct 155 CGTCTCTCAGCTCGCGCCGCCGCTCCATCCACTCCTATGATCAGAAACAG-C-CTTCAAT 212 Query 247 CTTTCTCTTCTCTCGCCGATCAAGTAATCTCA-CA-CTTACACACTTCAAGG-ATCCAAG 303 ||||||| || |||| ||| |||||||| | || |||| | | ||| ||| ||| || Sbjct 213 CTTTCTCCCCTTTCGCTGATAAAGTAATC-AATCATCTTA-AAAATTC-AGGTATCAAAA 269 Query 304 TCCAACCGGGTCTAACCGACTCCGAATTCGCTAGAG-CAGAAGCAGAGTTTGCATTCGCT 362 ||||||||||||| ||||| |||| || || ||| | ||||| ||||||| ||| || Sbjct 270 TCCAACCGGGTCTCTCCGACACCGAGTTTGCCCGAGTC-GAAGCCGAGTTTGGTTTCACT 328 Query 363 TTTCCACCGGACCTCCGTGCTGTTCTCACCGCCGGT-T-TACCAGTCGGCGCC-GGATTT 419 || ||||||||| |||||| | | |||||||||||| | | || ||||| || ||||| Sbjct 329 TTCCCACCGGACATCCGTGTTATCCTCACCGCCGGTATCT-CC-GTCGG-TCCAGGATTC 385 Query 420 CCAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTCAGAGCTATGATCGATCTTCCTATC 479 ||||| ||||||||||||||||||||||| || ||| | || |||||||| || || ||| Sbjct 386 CCAGATTGGCGTTCTCCCGGAGCTCGTCTCCACCTCCGTGCCATGATCGAACTACCCATC 445 Query 480 GCCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTCTGGAGCAAATCTTGGGG-TTTAAG 538 |||||||| ||||| || ||||| | ||||| ||||||| ||||||||||||| ||||| Sbjct 446 GCCGCCGTATCGTTCCAAATCGCCAAAAACAGTCTCTGGTGCAAATCTTGGGGCTTTAA- 504 Query 539 ACCATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATGCTCTCAA-AAGAGCTCCTT 597 |||| ||||||||| |||||||||||||||||||||||| || || || ||||||||||| Sbjct 505 ACCACCCGACCCGGGAAAAGCTTTACGGGTCGCGAGAAACGC-CTTAAGAAGAGCTCCTT 563 Query 598 TGATGATACCAATCTTTGATCATTGCTATATTCCTTGTAACCCGTCTTTAGCGGGTAACC 657 | ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 564 TAATGATCCCCATCTTCGATCACTGCTACATTCCTTGTAACCCGTCTTTAGCGGGTAATC 623 Query 658 CGGTTTT-TTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTTTCTGATTTC 716 ||||||| || || |||||||| ||||| ||||||||||||||||||||||| || ||| Sbjct 624 CGGTTTTCTTC-ATCGACGAGACTCGGATCTTCTGTTGCGGGTCGGATCTTTCCGAGTTC 682 Query 717 TTCGAGCGTGAGTCTG-TGTTTAGAGGGTCTGACACGTGT-CCGGTTGT-TT-TAACGAA 772 |||||||| || |||| | ||| || | || || | | | || | | || | || || Sbjct 683 TTCGAGCGAGAATCTGCT-TTTCGAAGCTCCGA-AT-TCTTCCCGA-GAATTCTCACTAA 738 Query 773 GCAGCGTTCGGTGAGTGAGAAATCAGCCGGGTCGTCGTCGTCTTCTTCATCAAATTTTTC 832 ||| ||||| ||||| ||||||||||| || || || ||| || | ||| | Sbjct 739 GCAACGTTCAGTGAGCGAGAAATCAGCTGGATCATCCTCGA-------AT-A--TTTCCC 788 Query 833 G-AGAATGAGTTTAGATTCGGGTCGGGTTCACGGG-TCGAGTACAC-CGAGATGGGTTGA 889 | |||| | || |||||||||||||| | ||||| | | ||| | ||||||||||||| Sbjct 789 GGAGAA-GC-TT-AGATTCGGGTCGGGCTAACGGGATGG-GTA-AGTCGAGATGGGTTGA 843 Query 890 GTTTTGGAGTGACGCGGCGGTTGATCGTCGGAGGAGAAACTCTGCTTCTTCTATGTCGTC 949 || ||||||||||| ||||| |||||| | || ||||||| || || | || |||| Sbjct 844 ATTCTGGAGTGACGCTGCGGTGGATCGTTGCCGGCGAAACTCCGCCTCACC-AT--CGTC 900 Query 950 GTCACACT-CTTCATCGCCGGAGAGATATTTAGATTTACCAAGATCCGAGACACCGAAAT 1008 |||| || ||||||||||||| | | |||| | | ||||| ||||||| Sbjct 901 GTCAT-CTTCTTCATCGCCGGACC--T-TC--------CCAAAA-CAGAGACTCCGAAAT 947 Query 1009 GGGTCGACGATTACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGGAGCGAAT 1068 |||| || | ||||| ||||||||||| ||| | || |||||||||||||||||||||| Sbjct 948 GGGTAAACCAGTACGTAAACCGGATCGGTTCGATATTGAGAGGAGGCGGGTGGAGCGAAT 1007 Query 1069 CCGACGTTGATGATATTGTACACGTGTCAGCATCTGGtttttttGAGGGTGAAATGGTAA 1128 |||| ||||||| || | |||||||||||||| ||||| ||||||||||||||||||| Sbjct 1008 CCGATATTGATGAGATAATCCACGTGTCAGCATCGGGTTTCTTTGAGGGTGAAATGGTAA 1067 Query 1129 TTTTGGATAATCAAGCCGTTCTTGATGCATTGCTTTTG--AAA-GCGGGTCGGTTCTCGG 1185 || ||||||||||| | |||||||||| | |||||| ||| ||||||||| |||| | Sbjct 1068 TTATGGATAATCAAACTGTTCTTGATG--T-GCTTTTATTAAAAGCGGGTCGGATCTCTG 1124 Query 1186 AGTCGCTCCGAAAAGCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTTTTGATT 1245 |||||||||| ||| | || ||||||||||||||||| ||||| || ||||| |||| || Sbjct 1125 AGTCGCTCCGTAAATCCGGTTGGAGCTCCGAAGAAGTCTCGGACGCGCTTGGGTTTGGTT 1184 Query 1246 TTCGACCGGAGAAGGAGAAGAAACCGGTGAAGAAGCTATCTCCTGAACTTGTCCAACGAA 1305 |||||||||| ||||||| ||||||||| |||| || || |||| || ||| ||| || Sbjct 1185 TTCGACCGGAAAAGGAGAGGAAACCGGTTCAGAAACTCTCGCCTGTGCTCGTCGAAC-AA 1243 Query 1306 T-CGGGAAACTTGCTGAGTCGGTTTCTCGGTCATGA 1340 | || ||||||||||| | |||||| ||||||||| Sbjct 1244 TTCGAAAAACTTGCTGAATGGGTTTCCCGGTCATGA 1279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59154150485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5