BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50440.1
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348153 jgi|Araly1|348153|fgenesh1_pg.C_scaffold_5001545 1304 0.0
Ahg485395 jgi|Araly1|485395|fgenesh2_kg.5__1387__AT3G50430.1 147 2e-34
> Ahg348153 jgi|Araly1|348153|fgenesh1_pg.C_scaffold_5001545
Length=792
Score = 1304 bits (706), Expect = 0.0
Identities = 760/787 (97%), Gaps = 0/787 (0%)
Strand=Plus/Plus
Query 140 GCAGCAACAACAACTCCATCACTTCGTCTTTGTCCACGGCTCATGTCATGGAGCATGGTG 199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 GCAACAACAACAACTCCATCACTTCGTCTTTGTCCACGGCTCATGTCATGGAGCATGGTG 65
Query 200 CTGGTTCAAACTAGCTGCAAAGCTCAAGCTCGATGGTCACCGTGTGACAGCTATCGACCT 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 CTGGTTCAAACTAGCTGCAAAGCTCAAGCTCGATGGTCACCGTGTGACAGCTATCGACCT 125
Query 260 TGGTGGCTCCGGTGTCGACACGAGGCAGCTCCATGAGGTTCGTTTGGTGTCGGCGTATCT 319
|||||| ||||||||||||||||||| |||| | ||||||||||||||||||| ||||||
Sbjct 126 TGGTGGGTCCGGTGTCGACACGAGGCGGCTCGAAGAGGTTCGTTTGGTGTCGGAGTATCT 185
Query 320 AGAGCCTTTGATGAGTTTCATGGAGTCTCTCCCTGAAAACGAGAAAGTGGTTCTTGTTGG 379
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 186 AGAGCCTTTGATGAGTTTCATGGAGTCTCTTCCTGAAAACGAGAAAGTGGTTCTTGTTGG 245
Query 380 TCATAGCTATGGTGGCATTGGAACTTCTCTTGCTATGGAAAGGTTTCCGACCAAAGTCTC 439
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 246 TCATAGCTATGGTGGCATTGGAACCTCTCTTGCTATGGAAAGGTTTCCGACCAAAGTCTC 305
Query 440 TGTCGGAATCTTCCTCTCTGCTTACATGCCGCACCATGACTCTCCTCCGGCGGTTTTGAT 499
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 306 TGTCGGAATCTTCCTCTCTGCTTACATGCCGCACCATGACTCTCCTCCAGCGGTTTTGAT 365
Query 500 TCAAGAGTATTTTACGAGACTACCAGAGGGTTTCGCTATGGACTGTGAGTTTACATTCGA 559
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 366 ACAAGAGTATTTTACGAGACTACCAGAGGGTTTCGCTATGGATTGTGAGTTTACATTCGA 425
Query 560 GGAAGGATTAGAACACCCACCAAGTTCAGTTTTGTTCGGTACTAGTTTCTTGAAGGAGAA 619
||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct 426 GGAAGGACTAGAACATCCTCCAAGTTCAGTTTTGTTCGGTACTATTTTCTTGAAGGAGAA 485
Query 620 GGCATATAGTAATTGCCAGTTAGAGGATCTAGAATTAGCCATGGCGTTGATGAAACCAAG 679
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 486 GGCATATAGTAATTGCCAATTAGAGGATCTAGAATTAGCCATGGCGTTGGTGAAACCGAG 545
Query 680 CTGGTTATACACTAAGGAAATGGGAGGTGAAGATCTGATAACAAAGGAGAGGTATGGATC 739
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 546 CTGGTTATACACTAAGGAAATGGGAGGTGAAGATTTGATAACAAAGGAGAGGTATGGATC 605
Query 740 TGGGAAGAGAGTGTTTATTGTCTGTGAAGGCGACAATGTGGTTCCAGAGGAGATTCAGAA 799
||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||
Sbjct 606 TGGGAAGAGAGTGTTTATTGTTTGCGAAGGCGACAATGTGCTTCCGGAGGAGATTCAGAA 665
Query 800 GTGGATGATTAGTAACTACGAGCCTCACGAAGTTAAGCGGATTGAAGAAGCTGGTCACAT 859
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 666 GTGGATGATTAGTAACTACGAGCCTCACGAGGTTAAGCGGATTGAAGAAGCTGGTCACAT 725
Query 860 GGCTATGCTCACTAAGCCTCATGAACTTTCTCAACTGCTACAAGAAATAGCAGCGAAATA 919
|||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 726 GGCTATGCTCACTAAGCCTCATCAGCTTTCTCAACTGCTACAGGAAATAGCAGCGAAATA 785
Query 920 TAACTAA 926
|||||||
Sbjct 786 TAACTAA 792
> Ahg485395 jgi|Araly1|485395|fgenesh2_kg.5__1387__AT3G50430.1
Length=2340
Score = 147 bits (79), Expect = 2e-34
Identities = 93/99 (94%), Gaps = 3/99 (3%)
Strand=Plus/Minus
Query 909 GCAGCGAAATATAACTAAATGTAAAATGATGACACCTGTGTATGATTTGGGCTCAGTTAC 968
|||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||
Sbjct 2340 GCAGCGAAATATAACTAAATGTAAAATGAT-A-A-CAATGTATGATTTGGGCTCAGTTAC 2284
Query 969 ATCTATGATATGAATAAGAGAGTTTCAATATTTGTGATT 1007
|| ||||||||||||||||||||||||||||||||||||
Sbjct 2283 ATTTATGATATGAATAAGAGAGTTTCAATATTTGTGATT 2245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37436704494
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5