BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50560.1 Length=1159 Score E Sequences producing significant alignments: (Bits) Value Ahg937893 jgi|Araly1|937893|scaffold_502084.1 1395 0.0 > Ahg937893 jgi|Araly1|937893|scaffold_502084.1 Length=869 Score = 1395 bits (755), Expect = 0.0 Identities = 827/861 (96%), Gaps = 8/861 (1%) Strand=Plus/Plus Query 162 GGAAAGATCATAAAGTATCGATGATGAGAAACGTAGGGAGTTCGAGCTCTGGCAGCAAAG 221 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 1 GGAAAGATCATAAAGTATCGATGATGAGAAACGTAGGGAGTTCGAGCTCCAGCGGCAAAG 60 Query 222 GCATAGCGGCCGTAGTCGGCGTTGGTCCAAAGCTCGGTCGCTCCATCGCTCGGAAGTTTG 281 |||||||||| || || ||||||||||| ||||| || |||||||||||||||||||||| Sbjct 61 GCATAGCGGCGGTGGTTGGCGTTGGTCCGAAGCTTGGCCGCTCCATCGCTCGGAAGTTTG 120 Query 282 CTCACGAAGGCTACACCGTCGCCATCCTCGCTCGTGATCTTGGTAGGTTATCTAGAGTAG 341 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 121 CTCACGAAGGCTACACCGTCGCCATTCTCGCTCGCGATCTTGGTAGGTTATCTAGAGTAG 180 Query 342 CAGAAGAGATAGCAAGAGAAGAGAAAGCACAAGTGTTTGCTATAAGAATTGATTGTGCAG 401 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 181 CAGAAGAGATAGCAAGAGAAGAGAAAGCTCAAGTGTTTGCTATAAGAATTGATTGTGCAG 240 Query 402 ATCCAAGAAGTGTAAGAGAAGCCTTCGAAGGAGTATTGTCGTTAGGGTTCGTGGAGGTTT 461 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 241 ATCCAAGAAGTGTAAGAGAAGCCTTCGAAGGAGTATTGTCATTAGGGTTCGTGGAGGTTT 300 Query 462 TAGTGTACAATGCTTATCA---TTC-T--TCTTACGCAAGTCACCATCCCACTTCTTTCA 515 | ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct 301 TGGTGTACAATGCTTATCATTCTTCTTCGTCTTACGCAAGTCACCATCCCACTTCTTTCA 360 Query 516 CCCACATTCCTTTTCAATCTTTCCAAACATCTATCTCTGTCTCTGTCTTCGCTGCATTTC 575 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 361 CTCACATTCCTTTTCAATCTTTCCAAACTTCTATCTCTGTCTCTGTCTTCGCTGCATTTC 420 Query 576 TTTGCGCTCAACAGGTTACTCCCGGGATGATGGAGAAAGGAAAAGGAACTATACTCTTCA 635 ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTTGCGCCCAACAGGTTATTCCCGGGATGATGGAGAAAGGAAAAGGAACTATACTCTTCA 480 Query 636 CCGGTTGCTCGGCGTCTTTGAATGGCATTGCTGGTTTCTCCGAACTATGCTGTGGGAAAT 695 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 481 CCGGTTGCTCGGCGTCTTTGAATGGCATTGCTGGTTTCTCCGAGCTATGCTGTGGGAAAT 540 Query 696 TTGCGTTGAGGGCACTGTCTCAATGCTTAGCAAAAGAATATCAAGCTTTTGGAATACATG 755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTGCGTTGAGGGCACTGTCTCAATGCTTAGCAAAAGAATATCAAGCTTTTGGAATACATG 600 Query 756 TGGCTCATGTTATCATCGACGGTGTGGTTGGACCTCCAAGAGAAACAAACATCCCTCCCC 815 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGGCTCATGTTATCATCGACGGTGTGGTTGGACCTCCAAGAGAAACAAACATCCCTCCCC 660 Query 816 GAGGAATGGTCGCAGAGCAATCATTCAACGTAGGAGGCGAAGATGGAGAAGGAGAAGGAG 875 |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GAGGAATGGTCGTGGACCAATCATTCAACGTAGGAGGCGAAGATGGAGAAGGAGAAGGAG 720 Query 876 AAAGCTCGGGAGTGATGGGAATGGATCCTGATGTATTGGCTCAAACTTATTGGTATCTCC 935 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 721 AAAGCTCGGGAGTGATGGGAATGGATCCTGATGTATTGGCTCAAACATATTGGTATCTCC 780 Query 936 ATGTTCAAGACCGGAGAGCTTGGACACATGAACTCGATATCCGACCATCAAACCCAA-AT 994 |||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| || Sbjct 781 ATGTCCAAGACCGGAGAGCTTGGACCCATGAACTCGATATCCGACCATCAAACACAAGAT 840 Query 995 TTCTAGCTAGTACTTaaaaaa 1015 | ||||||||||||||||||| Sbjct 841 T-CTAGCTAGTACTTAAAAAA 860 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43231387878 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5