BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50630.1
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485410 jgi|Araly1|485410|fgenesh2_kg.5__1402__AT3G50630.1 880 0.0
> Ahg485410 jgi|Araly1|485410|fgenesh2_kg.5__1402__AT3G50630.1
Length=689
Score = 880 bits (476), Expect = 0.0
Identities = 639/713 (90%), Gaps = 30/713 (4%)
Strand=Plus/Plus
Query 92 agagatagagaTCTGGAAGGTGACGTCGTAGGAGATTATGGCGGCGGTTAGGAGAAGAGA 151
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGAGAGATCTTGAAGGTGACGTCGTCGGAGATTATGGCGGCGGTTAGGAGAAGAGA 60
Query 152 ACGAGATGTGGTTGAAGAGAATGGAGTTACGACGACGACGGTGAAACGAAGGAAGATGGA 211
| ||||||||||||| || ||||||||| |||||||||||||||| || |||||||||||
Sbjct 61 AGGAGATGTGGTTGATGAAAATGGAGTTGCGACGACGACGGTGAAGCGGAGGAAGATGGA 120
Query 212 GGAGGAAGTGGAT-TTAGTGGAATCTAGGATAATTCTGTCTCCGTGTGTACAGGCGACGA 270
|||||| |||||| || || ||||| ||| || || |||| |||| ||||||||||||||
Sbjct 121 GGAGGAGGTGGATGTT-GTAGAATCGAGGCTAGTTTTGTCACCGTCTGTACAGGCGACGA 179
Query 271 ATCGCGGTGGAATTGTGGCGAGAAATTCAGCAGGAGCGTCGGAGACGAGTGTTGTTATAG 330
|||||| |||||| |||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 180 ATCGCGTTGGAATAGTGGCGAGGAATTCAGCAGGAGCGTCGGAGATGAGTGTTGTTATAG 239
Query 331 TACGACGGCGAGATTCTCCTCCGGTTGAAGAACAGTGTCAAATCGAAGAAGAAGATTCGT 390
| |||||||||||||||||||| ||||||||||| ||||||||| | | |
Sbjct 240 TTCGACGGCGAGATTCTCCTCCTGTTGAAGAACAATGTCAAATC------G-A-A----- 286
Query 391 CGGTTTCGTGTTGTTCTACATCGGAAGAGAAATCGAAACGGAGAATCGAATTTGTAGATC 450
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 287 --GTTTCGTGTTGTTCTAGATCGGAAGAGAAATCGAAACGGAGAATCGAATTTGTAGATG 344
Query 451 TTGAGGAAAATAACGGTGACGATCGTGAAACAGAAACGTCGTGGATTTACGATGATTTGA 510
||||||||||||||||||| |||| |||||| | ||||||||||||||| |||||||| |
Sbjct 345 TTGAGGAAAATAACGGTGATGATCATGAAACTGTAACGTCGTGGATTTATGATGATTTTA 404
Query 511 ATAAGAGTGAGGAATCGATGAACATGGATTCTTCTTCGGTGGCTGTTG-A-A-GATGTAG 567
||||||||||||||||||||||||||||||||||||||| |||||| | | | |||||||
Sbjct 405 ATAAGAGTGAGGAATCGATGAACATGGATTCTTCTTCGGCGGCTGTAGAAGATGATGTAG 464
Query 568 AGTCTCGCCG-CAGGTTAAGGAAGAGTCTCCATGAGACGGTGAAGGAAGCTGAGTTAGAA 626
|||||||||| | ||||||||||||| | ||||||||||||||| ||||||||| |||||
Sbjct 465 AGTCTCGCCGTC-GGTTAAGGAAGAGCCGCCATGAGACGGTGAAAGAAGCTGAGCTAGAA 523
Query 627 GACTTTTTT-CAGGTGGCGGAGAAAGATCTTCGGAATAAGTTGTTGGAATGTTCTATGAA 685
|| |||||| || ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 524 GA-TTTTTTCCAAACGGCGGAGAAAGATCTTCGGAATAAGATGTTGGAATGTTCTATGAA 582
Query 686 GTATAACTTCGATTTCGAGAAAGATGAGCCACTTGGTGGAGGAAGATACGAGTGGGTTAA 745
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 583 GTATAACTTCGATTTCGAGAGAGATGAGCCACTTGGTGGAGGAAGATACGAGTGGGTTAA 642
Query 746 ATTGAATCCATGAAGAAGACGATGATGATAATGATGATCATTGTTTTCACCAA 798
|||||||||||||||||||||||||| || |||| |||| ||||||||||
Sbjct 643 ATTGAATCCATGAAGAAGACGATGAT--TA-TGAT---CATTATTTTCACCAA 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369262818
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5