BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50670.1 Length=1586 Score E Sequences producing significant alignments: (Bits) Value Ahg485414 jgi|Araly1|485414|fgenesh2_kg.5__1406__AT3G50670.1 2364 0.0 > Ahg485414 jgi|Araly1|485414|fgenesh2_kg.5__1406__AT3G50670.1 Length=1556 Score = 2364 bits (1280), Expect = 0.0 Identities = 1454/1533 (95%), Gaps = 31/1533 (2%) Strand=Plus/Plus Query 64 AAAATCCTCCATCCGCTTCC-TCACGAAAAACCCTAGCACAGCTCCGAGATCCCTTTTGT 122 |||||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||| Sbjct 45 AAAATCCTCCATCCGCTTCCTTCACGAAAAACCCTAGCAGAGCTCCGAGATCTC-TTTGT 103 Query 123 CGCCATGGGAGACTCCGGCGATCCTTTCTTGCGTAATCCAAACGCCGCTGTTCAAGCTCG 182 ||||||||||||||||||||||||||| ||||||| || |||||||| ||||| || || Sbjct 104 TGCCATGGGAGACTCCGGCGATCCTTTCATGCGTAACCCTAACGCCGCCGTTCAGGCCCG 163 Query 183 CGCTAAAGTTCAGAACAGAGCCAATGTTCTTCAGCTTAAGCTGATGGGTCAGAGCCACCC 242 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 164 CGCTAAAGTTCAGAACAGAGCCAATGTTCTTCAGCTTAAGCTGATGGGTCAAAGCCACCC 223 Query 243 TACTGGCTTAACAAACAATCTCTTGAAGCTTTTTGAGCCACGTCCGCCATTGGAGTACAA 302 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 224 TACTGGCTTAACAAACAATCTCTTGAAGCTCTTTGAGCCACGGCCGCCATTGGAGTACAA 283 Query 303 ACCACCACCAGAGAAGAGAAAGTGCCCGCCTTATACAGGTATGGCTCAGTTTGTAAGTAA 362 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 284 ACCACCACCTGAGAAGAGAAAGTGCCCGCCTTATACAGGTATGGCTCAGTTTGTGAGTAA 343 Query 363 CTTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTAAGCCAGAAGTTGAATTACCTTC 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 344 CTTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTAAGCCAGAAGTTGAATTACCTTC 403 Query 423 GCAGAAAAGGGAAAGAATTCATAAATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGA 482 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 404 GCAGAAAAGGGAGCGAATTCATAAATTACGACTGGAGAAAGGTGTTGAAAAGGCTGCGGA 463 Query 483 GGACTTAAAGAAATATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGAC 542 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 464 GGACTTAAAGAAATATGACCCGAATAATGATCCAAATGCTACTGGAGATCCATACAAGAC 523 Query 543 ATTGTTCGTTTCAAGACTTAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGA 602 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 524 ATTGTTCGTTTCAAGACTTAACTACGAATCCTCTGAGAGTAAGATTAAAAGGGAGTTTGA 583 Query 603 ATCTTATGGACCAATTAAACGGGTTCATTTGGTGACTGATCAGCTGACCAATAAACCCAA 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 584 ATCTTATGGACCAATTAAACGGGTTCATTTGGTGACTGATCAGCTGACCAATAAACCCAA 643 Query 663 AGGATATGCTTTCATTGAGTACATGCACACCCGTGACATGAAAGCTGCATATAAGCAAGC 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 644 AGGATATGCTTTCATTGAGTACATGCACACCCGTGACATGAAAGCTGCATATAAGCAAGC 703 Query 723 TGATGGACAAAAGATTGACGGCAGAAGAGTTTTGGTTGATGTGGAGAGAGGTAGAACCGT 782 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 704 TGATGGACAAAAGATTGACGGCAGAAGAGTTTTGGTTGATGTTGAGAGAGGTAGAACCGT 763 Query 783 CCCAAACTGGCGTCCACGCAGGCTTGGTGGTGGACTTGGGACCTCAAGAGTGGGTGGTGG 842 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 764 CCCAAACTGGCGTCCACGCAGGCTTGGTGGTGGACTTGGGACCTCAAGAATCGGTGGTGG 823 Query 843 TGAAGAAATTGTTGGGGAACAACAACCGCAAGGAAGAACCTCCCAGTCAGAGGAGCCATC 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 824 TGAAGAAATTGTTGGGGAACAACAACCGCAAGGAAGAACCTCCCAGTCAGAGGAGCCATC 883 Query 903 GAGACCACGGGAAGAGCGTGAGAAATCTCGGGAAAAGGGAAAAGAAAGGGAA--AG---G 957 |||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 884 GAGACCACGGGAAGAGCGTGAGAAATCTCGGGAAAAGGGAAAAGAAAGGGAACGAGAAAG 943 Query 958 -TCTCGTGAGCTGTCTCACGAACAACCTCGAGAGAGGTCTCGTGACAGACCGAGAGAGGA 1016 || |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| Sbjct 944 GTCGCGTGAGCTGTCTCATGAACAACCTCGAGAGCGGTCTCGTGACAGGCCGAGAGAGGA 1003 Query 1017 TAAGCACCACAGAGACCGAGACCAAGGAGGCAGAGACAGGGATAGGGACAGCAGACGTGA 1076 |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| Sbjct 1004 TAAGCACCACAGAGACCGAGACCAAGCAGGCAGAGACAGGGATAGAGACAGTAGACGTGA 1063 Query 1077 TCGTGACCGGACCCGTGACAGAGGAGACAGAGACCGCCGTGACCGTGACAGGGGACGGGA 1136 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1064 TCGTGACCGGACCCGTGATAGAGGAGACAGAGACCGCCGTGACCGTGACAGGGGACGGGA 1123 Query 1137 TCGTACTTCAAGGGATCATGACCGAGACCGCAGTAGAAAGAAGGAGCGGGATTATGAAGG 1196 ||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| Sbjct 1124 TCGTACTTCAAGGGATCATGATCGAGACCGTAGTAGAAAGAAGGAGAGGGATTATGAAGG 1183 Query 1197 AGGTGAATATGAGCATGAGGGTGGTGGTCGGTCCCGTGAGAGAGATGCAGAGTAC---CG 1253 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 1184 AGGTGAATATGAGCATGAGGGTGGTGGTCGGTCCCGTGAAAGAGATGCAGAGTACAAACG 1243 Query 1254 TGGCGAGCCAGAAGAAACTCGTGGCTACTATGAAGACGATCAAGGGGACACAGACCGGTA 1313 |||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||||||| Sbjct 1244 TGGCGAGCCAGAAGAAACGCATGGCTACTACGAAGAAGATCAAGGGGACACAGACCGGTA 1303 Query 1314 CAGTCATCGCTACGATAAAATGGAGGAAGATGACTTCAGATATGAACGTGAGTACAAGCG 1373 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1304 CAGTCATCGCTACGATAAAATGGAGGAAGATGACTTCAGATATGAACGCGAGTACAAGCG 1363 Query 1374 GTCTAAGAGATCAGAATCGCGAGAGTATGTTCGTTGATGTTTCATTCGGCTGTTTAAAAC 1433 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1364 GTCTAAGAGATCAGAATCGCGAGAGTATGTTCGTTGATGTTTCATTCGGTTGTTTAAAAC 1423 Query 1434 TCTAAAAACTTAAGAATCCTTTTTGTTTATTCTAAATCAAAACTTGATGCAATTCTGTTT 1493 ||||||| |||||||||| ||||| | | || | || ||||| ||||||||| Sbjct 1424 TCTAAAA-CTTAAGAATC-TTTTT-T--A----AA--C----CT-GATGCGATTCTGTTT 1467 Query 1494 GTTACCTCTGAACTTGATTGCTATTTTTTCTCTTTTGAAGTTTGTCATATTATTAATCAA 1553 |||||| ||||||||||||||||||||||||||||||||||| |||||||||| | | || Sbjct 1468 GTTACCGCTGAACTTGATTGCTATTTTTTCTCTTTTGAAGTT-GTCATATTAT-ATT-AA 1524 Query 1554 AATCAAACCAACTTTAAAGTTGTGATGTTTTAT 1586 | || |||| |||| |||||||||||||| ||| Sbjct 1525 A-TCGAACCGACTTAAAAGTTGTGATGTTCTAT 1556 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59420782200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5