BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G50750.1 Length=1311 Score E Sequences producing significant alignments: (Bits) Value Ahg485421 jgi|Araly1|485421|fgenesh2_kg.5__1413__AT3G50750.1 1434 0.0 > Ahg485421 jgi|Araly1|485421|fgenesh2_kg.5__1413__AT3G50750.1 Length=1200 Score = 1434 bits (776), Expect = 0.0 Identities = 1036/1154 (90%), Gaps = 47/1154 (4%) Strand=Plus/Plus Query 1 CATATAAATACGAAACTTT-CTCTATTAAAATTATTTAACTTTTGCCTCTCTTTTCTCCT 59 ||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct 1 CATATAAATACGAAA-TTTCCTCCATTAAAATTATTTAACTTTTGCCTCTTTTTTCTCCT 59 Query 60 CGTGAAGGAAAATTCTTTAGTCATTTTTTCTCTCCTCGAGAATTACGcaaacacaacaaa 119 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 60 CTTGAAGGAAAATTCTTTAGTC-TTTTTTCTCTCCTCGAGAATTACGCAAACACAAAAAA 118 Query 120 -aacccagacattgaaaag-taaaaaacaaaaacagaga--aaGTGGGA-GATAG-AAGA 173 ||| || | | ||||||| ||||||| ||||||||||| || || | ||| | | | Sbjct 119 TAACTCA-AAACTGAAAAGTTAAAAAA-AAAAACAGAGAGGGAGAGGAATGATGGCATCA 176 Query 174 TGACGGCATCAGGAGGAGGATCAACGGCGGCGACGGGGAGGATGCCGACGTGgaaggaaa 233 || || | || |||||||||||||||||||||||||||||||||||||||||| || | Sbjct 177 GGA-GG-AGGAGAAGGAGGATCAACGGCGGCGACGGGGAGGATGCCGACGTGGAAAGAGA 234 Query 234 gagagaacaacaagaa-gagagaaagaagaagaagagCAATAGCAGCTAAAATCTTCACC 292 ||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| Sbjct 235 GAGAGAACAACAA-AAGGAGAGAAAGAAGAAGAAGAGCAATAGCAGCTAAAATATTCACC 293 Query 293 GGACTTAGATCTCAAGGCAATTATAAACTTCCTAAACACTGTGACAACAATGAAGTCCTC 352 |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 294 GGACTTAGATCTCAGGGCAATTATAAACTCCCTAAACACTGTGACAACAATGAAGTCCTT 353 Query 353 AAAGCTCTTTGTCTTGAAGCTGGTTGGATCGTTCATGAAGATGGCACCACTTATCGAAAG 412 ||||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 354 AAAGCACTTTGTCTCGAAGCTGGTTGGGTCGTTCACGAAGATGGCACCACTTATCGAAAG 413 Query 413 GGTTCTCGACCAACAGAAACAACAGTGCCGTGTTCGTCAATCCAACTTAGTCCACAATCA 472 |||||||||||||||||| ||||| | |||||||||||| |||||||| ||||||||| Sbjct 414 GGTTCTCGACCAACAGAAGCAACACCGTTGTGTTCGTCAATTCAACTTAGCCCACAATCA 473 Query 473 TCGGCCTTTCAAAGCCCAATTCCTTCGTATCAAGCTAGCCCTTCATCGTCATCTTACCCA 532 ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||| Sbjct 474 TCGGCCTTTCAAAGCCCAATTCCGTCGTACCAAGCTAGCCCATCATCGTCGTCTTACCCA 533 Query 533 AGTCCGACCC-----G---------------G-TTTGACCCGAATCAATCCTCGACTTAT 571 |||||||||| | | ||||||||||||||||||||||||||| Sbjct 534 AGTCCGACCCGATTTGATCACATTCCAAACCGATTTGACCCGAATCAATCCTCGACTTAT 593 Query 572 CTCATTCCCTATCTCCAAAACCTAGCTTCGTCTGGAAACCTCGCTCCTCTACGAATTTCC 631 |||||||| ||||| |||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 594 CTCATTCCTTATCTACAAAACCTTGCTTCATCAGGAAACCTCGCTCCTCTACGAATTTCC 653 Query 632 AATAGTGCCCCTGTTACACCGCCGATTTCTTCACCTAGAAGATCAAATCCGAGACTTCCG 691 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || Sbjct 654 AATAGTGCCCCTGTTACACCGCCGATTTCTTCACCTAGAGGGTCAAATCCGAGACTTTCG 713 Query 692 AGATGGCAAAGCAGTAATTTCCCAGTCTCAGCTCCGTCAAGCCCAACACGGCGTCTCCAT 751 ||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 714 AGATGGCAAAGTAGTAATTTTCCAGTCTCGGCTCCGTCAAGCCCAACGCGGCGTCTCCAC 773 Query 752 CACTACACATCGATTCCAGAATGCGATGAATCGGATGTTTCGACGGTTGATTCTTGTCGA 811 ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 774 CACTATACATCGATTCCAGAATGCGATGAATCGGATATTTCGACGGTTGATTCGTGTCGA 833 Query 812 TGGGGAAATTTCCAATCGGTTAACGTTTCTCAGACATGTCCTCCGTCGCCGACATTTAAC 871 ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 834 TGGGGAAATTTCCAACCGGGTAACGTTTCTCAGACATGTCCTCCGTCGCCGACTTTTAAC 893 Query 872 CTGGTCGGAAAAAGCGTTAGCTCCGTCGGAG-TAGATGTGTCGGTGAAGCCGTGGGAAGG 930 || |||||||||||||||| | || |||| | || ||||||||||||||||||||||| Sbjct 894 CTCGTCGGAAAAAGCGTTAACGGCGGGGGAGGT-GACGTGTCGGTGAAGCCGTGGGAAGG 952 Query 931 TGAGAAGATTCACGATGTTGGTATCGATGACTTGGAGCTGACGCTAGGTCACAACACCAA 990 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 953 TGAGAAGATTCACGATGTTGGTATCGATGACTTGGAGCTGACGTTAGGTAACAACACCAA 1012 Query 991 AGGACGCGGCTAGGTTAATATCGTGGTTT-AACTATTTAGTCGGGTCCGGTACGAGATT- 1048 |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| Sbjct 1013 AGGACGCGGCTAGGTTAATATCGTAGTTTTAACTATTTAGTCGGGTCCGGTACGGGATTT 1072 Query 1049 GGTTCCGGTTAAATCGTAGCTAATAGATTGGTCTT--T----GTCTTCATGACTATTTTG 1102 |||||||||| || |||||||||||| |||||||| | |||||||||||||||| | Sbjct 1073 GGTTCCGGTTTAACCGTAGCTAATAGGTTGGTCTTGGTCTTAGTCTTCATGACTATTT-G 1131 Query 1103 TACAGTCATTATCA 1116 |||||||||||||| Sbjct 1132 TACAGTCATTATCA 1145 Score = 65.8 bits (35), Expect = 8e-10 Identities = 38/39 (97%), Gaps = 1/39 (3%) Strand=Plus/Plus Query 1156 ttttATATGTAATGGTGGATAATGAAAAATGCAAGTGTG 1194 |||| |||||||||||||||||||||||||||||||||| Sbjct 1163 TTTT-TATGTAATGGTGGATAATGAAAAATGCAAGTGTG 1200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49026071262 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5