BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50820.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937931 jgi|Araly1|937931|scaffold_502122.1 1670 0.0
Ahg951584 jgi|Araly1|951584|scaffold_803471.1 966 0.0
Ahg328078 jgi|Araly1|328078|fgenesh1_pm.C_scaffold_7000305 453 1e-126
> Ahg937931 jgi|Araly1|937931|scaffold_502122.1
Length=1039
Score = 1670 bits (904), Expect = 0.0
Identities = 994/1039 (96%), Gaps = 0/1039 (0%)
Strand=Plus/Plus
Query 94 TTGACATCTGAGTCTTGTCATCATGGCAACTTCTCTCCAAGCCGCCGCAACTTTTCTTCA 153
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGACATCTGAGTCTTGTCGTCATGGCAACTTCTCTCCAAGCCGCCGCAACTTTTCTTCA 60
Query 154 ACCGGCGAAGATTGCCGCTTCTCCTTCTCGTAATGTCCATCTCCGATCAAACCAAACCGT 213
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCGGCGAAGATAGCCGCTTCTCCTTCTCGTAATGTCCATCTCCGATCAAACCAAACCGT 120
Query 214 GGGCAAGTCCTTTGGGTTAGACTCTTCACAAGCTAGGCTCACGTGCTCTCTCCACTCTGA 273
|||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 121 GGGCAAGTCCTTTGGGTTGGACTCTTCACAAGCTAGACTCACTTGCTCCCTCCACTCTGA 180
Query 274 CCTCAAAGACTTCGCTGGAAAATGCTCCGACGCCGCCAAGATCGCCGGTTTTGCTCTAGC 333
||| ||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 181 CCTGAAAGACTTCGCCGGAAAATGCTCTGAAGCCGCCAAGATCGCCGGTTTCGCTCTAGC 240
Query 334 CACCTCTGCTCTCGTTGTCTCGGGGGCCGGTGCGGAGGGAGCACCAAAGAGGCTAACGTA 393
|||||||||||| |||||||||||||| |||| || ||||| |||||||||||||||||
Sbjct 241 CACCTCTGCTCTTGTTGTCTCGGGGGCTAGTGCAGAAGGAGCGCCAAAGAGGCTAACGTA 300
Query 394 CGACGAGATACAGAGCAAGACTTACATGGAGGTAAAGGGTACCGGTACGGCAAACCAGTG 453
||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct 301 CGACGAGATACAGAGCAAGACTTACATGGAGGTTAAGGGGACTGGTACGGCGAACCAGTG 360
Query 454 TCCAACTATCGATGGTGGCTCTGAGACATTCTCGTTCAAAGCTGGTAAGTACACAGGCAA 513
||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 361 TCCGACTATCGACGGTGGCTCTGAGACATTCTCGTTCAAACCTGGTAAGTACACTGGCAA 420
Query 514 GAAGTTCTGCTTCGAGCCCACTTCCTTCACCGTCAAGGCAGATAGCGTCAGCAAGAATGC 573
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGTTCTGCTTTGAGCCCACTTCCTTCACCGTCAAGGCAGATAGCGTCAGCAAGAATGC 480
Query 574 ACCGCCGGATTTCCAAAACACCAAGCTCATGACCCGTCTCACTTACACACTCGATGAGAT 633
||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 481 ACCGCCGGATTTCCAAAACACTAAGCTCATGACCCGTCTTACTTACACGCTTGATGAGAT 540
Query 634 CGAAGGACCCTTCGAGGTTGGTTCAGACGGAAGCGTGAAGTTCAAGGAAGAAGATGGTAT 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 CGAAGGACCCTTCGAGGTTGGTTCAGACGGAAGCGTGAAGTTCAAGGAAGAAGATGGGAT 600
Query 694 CGATTACGCAGCAGTCACAGTCCAGCTTCCGGGAGGAGAACGCGTGCCGTTCCTCTTCAC 753
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGATTACGCAGCAGTCACAGTCCAGCTTCCGGGAGGAGAACGCGTGCCGTTCCTCTTCAC 660
Query 754 GGTTAAGCAGCTCGAGGCTTCAGGGAAACCCGAAAGCTTCAGTGGCAAGTTCTTAGTTCC 813
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GGTTAAGCAGCTCGAGGCTTCAGGGAAACCCGAAAACTTCAGTGGCAAGTTCTTAGTTCC 720
Query 814 ATCGTACCGTGGCTCGTCCTTTTTGGACCCAAAGGGTCGTGGTGGATCCACTGGGTACGA 873
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATCGTACCGTGGCTCGTCCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACTGGGTACGA 780
Query 874 TAATGCAGTGGCTTTGCCTGCCGGAGGCAGAGGAGACGAGGAAGAGCTATCCAAGGAAAA 933
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 781 TAATGCAGTGGCTTTGCCTGCCGGAGGCAGAGGAGACGAGGAAGAGCTGTCGAAGGAAAA 840
Query 934 CGTCAAGAACACGGCGGCTTCCGTCGGAGAGATCACTTTGAAGATCACAAAGAGCAAACC 993
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGTCAAGAACACGGCGGCTTCTGTCGGAGAGATCACTTTGAAGATCACAAAGAGCAAACC 900
Query 994 GGAGACAGGTGAAGTGATCGGAGTGTTCGAGAGTCTTCAGCCATCGGATACTGACTTGGG 1053
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 901 GGAGACAGGTGAAGTGATCGGAGTTTTCGAGAGCCTTCAGCCATCGGATACTGACTTGGG 960
Query 1054 TGCTAAGGTACCAAAAGATGTGAAGATCCAAGGGGTTTGGTACGGTCAGATTGAGTGATT 1113
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 TGCGAAGGTACCTAAAGATGTGAAGATCCAAGGGGTTTGGTACGGTCAGATTGAGTAATT 1020
Query 1114 CATATAATTTGTTACTTTT 1132
|||||||||| ||||||
Sbjct 1021 TTTATAATTTGTAACTTTT 1039
> Ahg951584 jgi|Araly1|951584|scaffold_803471.1
Length=1121
Score = 966 bits (523), Expect = 0.0
Identities = 856/1016 (84%), Gaps = 26/1016 (3%)
Strand=Plus/Plus
Query 115 CATGGCAACTTCTCTCCAAGCCGCCGCAACTTTTCTTCAACCGGCGAAGATTGCCGCTTC 174
||||||| | ||||||||| || |||| || || || || |||||||||| ||| | |
Sbjct 20 CATGGCAGCCTCTCTCCAATCCACCGCCACATTCCTCCAGTCGGCGAAGATCGCCACCGC 79
Query 175 TCCTTCT--C-GTAATGTC-CATCTCCGATCAAAC-CAAACCGTGGGCAAGTCCTTT-GG 228
||||||| | | | || | || ||||| || || ||| |||| ||||| | |||| ||
Sbjct 80 TCCTTCTCGCGGCAGTG-CTCACCTCCGGTC-TACTCAATCCGTCGGCAAAT-CTTTCGG 136
Query 229 GTTAGACT-CTT-CACAAGCTAGGCTCACGTGCT-CTCTCCACTCTGACCTCAAAGACTT 285
| |||| | ||| | | ||| | ||||| |||| || |||| |||||| |||| |||||
Sbjct 137 GCTAGA-TACTTCCTC-TGCTCGCCTCACTTGCTCCT-TCCAATCTGACTTCAAGGACTT 193
Query 286 CGCTGGAAAATGCTCCGACGCCGCCAAGATCGCCGGTTTTGCTCTAGCCACCTCTGCTCT 345
||| || |||||||||||||| | ||| ||||| || || ||||| ||||||||||||||
Sbjct 194 CGCCGGTAAATGCTCCGACGCTGTCAAAATCGCTGGATTCGCTCTTGCCACCTCTGCTCT 253
Query 346 CGTTGTCTCGGGGGCCGGTGCGGAGGGAGCACCAAAGAGGCTAACGTACGACGAGATACA 405
||| |||||||| || |||| |||||||| |||||||| || || ||||| ||||| ||
Sbjct 254 CGTCGTCTCGGGAGCAAGTGCAGAGGGAGCTCCAAAGAGACTGACCTACGATGAGATTCA 313
Query 406 GAGCAAGACTTACATGGAGGT-AAAGGGTACCGGTACGGCAAACCAGTGTCCAACTATCG 464
||||||||| |||||||| || ||| || || || ||||| |||||||| |||||||| |
Sbjct 314 GAGCAAGACATACATGGAAGTGAAA-GGAACTGGAACGGCTAACCAGTGCCCAACTATTG 372
Query 465 ATGGTGGCTCTGAGACATTCTCGTTCAAAG-CTGGTAAGTACACAGGCAAGAAGTTCTGC 523
| |||||||||||||||||||||||| ||| | || |||||| |||||||||||||||||
Sbjct 373 ACGGTGGCTCTGAGACATTCTCGTTC-AAGCCCGGAAAGTACGCAGGCAAGAAGTTCTGC 431
Query 524 TTCGAGCCCACTTCCTTCACCGTCAAGGCAGATAGCGTCAGCAAGAATGCACCGCCGGAT 583
|||||||| ||||||||||||||||||||||| || || |||||||| || || || ||
Sbjct 432 TTCGAGCCTACTTCCTTCACCGTCAAGGCAGACAGTGTAAGCAAGAACGCGCCTCCTGAG 491
Query 584 TTCCAAAACACCAAGCTCATGACCCGTCTCACTTACACACTCGATGAGATCGAAGGACCC 643
||||| |||||||||||||||||||||||||| ||||| || || |||||||||||||||
Sbjct 492 TTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACCCTTGACGAGATCGAAGGACCC 551
Query 644 TTCGAGGTTGGTTCAGACGGAAGCGTGAAGTTCAAGGAAGAAGATGGTATCGATTACGCA 703
|| ||||||| ||||||||||||||| || ||||||||||||||||| ||||| |||||
Sbjct 552 TTTGAGGTTGCTTCAGACGGAAGCGTCAATTTCAAGGAAGAAGATGGAATCGACTACGCT 611
Query 704 GCAGTCACAGTCCAGCTTCCGGGAGGAGAACGCGTGCCGTTCCTCTTCACGGTTAAGCAG 763
|||||||||||||||||||| ||||| || || ||||| |||||||| || || || |||
Sbjct 612 GCAGTCACAGTCCAGCTTCCAGGAGGTGAGCGTGTGCCATTCCTCTTTACAGTCAAACAG 671
Query 764 CTCGAGGCTTCAGGGAAACCCGAAAGCTTCAGTGGCAAGTTCTTAGTTCCATCGTACCGT 823
|| || || ||||| ||||| || ||||||| || || ||||| |||||||||||||||
Sbjct 672 CTTGACGCCTCAGGCAAACCAGATAGCTTCACCGGAAAATTCTTGGTTCCATCGTACCGT 731
Query 824 GGCTCGTCCTTTTTGGACCCAAAGGGTCGTGGTGGATCCACTGGGTACGATAATGCAGTG 883
||||| ||||| ||||||||||||||||||||||||||||| || || || || || |||
Sbjct 732 GGCTCTTCCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCCGTG 791
Query 884 GCTTTGCCTGCCGGAGGCAGAGGAGACGAGGAAGAGCTATCCAA-GGAAAACGTCAAGAA 942
|| ||||| || |||||||||||||||||||| ||||| | || ||| || || |||||
Sbjct 792 GCATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCT-TGTAAAGGAGAATGTGAAGAA 850
Query 943 CACGGCGGCTTCCGTCGGAGAGATCACTTTGAA-GATCACAAAGAGCAAACCGGAGACAG 1001
|||||| ||||| || |||||||||||| |||| | | ||||||||||| ||||||||||
Sbjct 851 CACGGCAGCTTCGGTGGGAGAGATCACTCTGAAAG-TGACAAAGAGCAAGCCGGAGACAG 909
Query 1002 GTGAAGTGATCGGAGTGTTCGAGAGTCTTCAGCCATCGGATACTGACTTGGGTGCTAAGG 1061
| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 910 GAGAGGTGATCGGAGTGTTCGAGAGTCTTCAGCCGTCAGATACTGACTTGGGTGCTAAGG 969
Query 1062 TACCAAAAGATGTGAAGATCCAAGGGGTTTGGTACGGTCAGA-TTGAGTGATTCAT 1116
||||||| |||||||||||||||||||| ||||| ||||| | ||||||||| |||
Sbjct 970 TACCAAAGGATGTGAAGATCCAAGGGGTGTGGTATGGTCA-ACTTGAGTGAT-CAT 1023
> Ahg328078 jgi|Araly1|328078|fgenesh1_pm.C_scaffold_7000305
Length=987
Score = 453 bits (245), Expect = 1e-126
Identities = 621/797 (78%), Gaps = 48/797 (6%)
Strand=Plus/Plus
Query 311 AAGATCGCCGGTTTTGCTCTAGCCACCTCTGCTCTCGTTGTCTCGGGGGCCGGTGCGGAG 370
|||||||| |||||| | || ||| |||| ||||| |||||||||| || ||| ||
Sbjct 190 AAGATCGCTGGTTTTTCACTCGCCGCCTCCGCTCTTTTTGTCTCGGGTGCAAATGCAGAA 249
Query 371 GGAGCACCAAAGAGGCTAACGTACGACGAGATACAGAGCAAGACTTACATGGAGGT-AAA 429
|| | |||||||||||||| | |||||||||||||||||||||||||||||| || |||
Sbjct 250 GGCGTGCCAAAGAGGCTAACTTTCGACGAGATACAGAGCAAGACTTACATGGAAGTGAAA 309
Query 430 GGGTACCGGTACGGCAAACCAGTGTCCAACTATCGATGGTGGCTCTG-AGACATTCTCGT 488
|| || || || || || || |||||||| || || ||||||| || || ||||| |
Sbjct 310 GGA-ACAGGAACCGCGAATCAATGTCCAACCATTGAAGGTGGCT-TGGAGTCATTCGCCA 367
Query 489 TCAAAGCT-GGTAAGTAC-ACAGGCAAGAAGTTCTGCTTCGAGCCCACTTCCTTCACCGT 546
| ||||| || || ||| || | |||||| |||||||| ||||| ||||| ||||||||
Sbjct 368 T-AAAGCCAGGCAAATACTAC-GCCAAGAAATTCTGCTTAGAGCCAACTTCATTCACCGT 425
Query 547 CAAGGCAGATAGC-GTCAGCAAGAA-TGC-ACCGCCGGATTTCCAAAACACCAAGCTCAT 603
||| || || || || |||||||| | | || ||| |||||||||||||| ||||||||
Sbjct 426 CAAAGCTGA-AGGAGTTAGCAAGAAGT-CTAC-GCCCGATTTCCAAAACACAAAGCTCAT 482
Query 604 GACCCGTCTCACTTACACACTCGATGAGATCGAAGGACCCTT-CGAGGTTGGTTCAGACG 662
||| ||||| || |||||||||||||| |||||||| ||||| ||| || | ||| || |
Sbjct 483 GACTCGTCTTACCTACACACTCGATGAAATCGAAGG-CCCTTTCGAAGTAGCTTCTGATG 541
Query 663 GAA-GCGTGAAGTT-CAAG-GAAGAAGATGGTATCGATTACGCAGCAGTCACAGTCCAGC 719
||| | |||||||| | || ||| | || ||||| |||||||| ||||| ||||| || |
Sbjct 542 GAAAG-GTGAAGTTTCTAGAGAA-A-GACGGTATTGATTACGCTGCAGTGACAGTACAAC 598
Query 720 TTCCGGGAGGAGAACGCGTGCCGTTCCTCTTCACGGTTAAGCAGCTCGAGGCTTCAGGG- 778
|||| || ||||| || || |||||| | |||||| | |||||||| | ||| || |||
Sbjct 599 TTCCTGGTGGAGAGCGTGTACCGTTCTTGTTCACGATCAAGCAGCTTGTGGCATC-GGGT 657
Query 779 AAACCCGAAAGCTTCAGTGGCA-AGTTCTTAGTTCCATCGTACCGTGGCTCGTCCTTT-T 836
||||| || ||||| | || | | ||||| || ||||| || | || ||||| ||| |
Sbjct 658 AAACCAGAGAGCTTTGGAGG-AGATTTCTTGGTGCCATCTTATAGAGGTTCGTC-TTTCT 715
Query 837 TGGACCC-AAAGGGTCGTGGTGGATCCACTGGG-TACGATAATGCAGTGGCTTTGCCTGC 894
|||| || ||||| |||||||| || || ||| ||||| ||||| || || || |||||
Sbjct 716 TGGATCCTAAAGGC-CGTGGTGGCTCTAC-GGGCTACGACAATGCGGTTGCATTACCTGC 773
Query 895 CGGAGGCAGAGGAGACGAGGAAGAGCTATCCAAGGAAAACGTCAAGAACACGGCGGCTTC 954
|| || | |||||| || |||||| | || || ||| ||||||||| || |||||
Sbjct 774 T--AG--AG-G-AGACGATGAGGAGCTAGCTAAAGAGAACAACAAGAACACAGCTGCTTC 827
Query 955 -CGTCGG-AGAGATCACT-TT-GAAGATCACAAAGAGCAAACCGGAGACAGGTGAAGTGA 1010
| | || | ||||||| || | | | |||||||| || || |||| |||||||||
Sbjct 828 ACTT-GGTA-AGATCACACTTAGT-G-TAACAAAGAGTAATCCCGAGAGTCGTGAAGTGA 883
Query 1011 TCGGAGTGTTCGAGAGTCTTCAGCCATCGGATACTGACTTGGGTGCTAAGG-TACCAAAA 1069
|||| || ||||||||| ||||||| ||||||||||| |||||||||||| | || ||
Sbjct 884 TCGGTGTTTTCGAGAGTATTCAGCCTTCGGATACTGATTTGGGTGCTAAGACT-CCTAAG 942
Query 1070 GATGTGAAGATCCAAGG 1086
||||| |||||||||||
Sbjct 943 GATGTCAAGATCCAAGG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5