BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50910.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897990 jgi|Araly1|897990|Al_scaffold_0005_1956 2054 0.0
Ahg332918 jgi|Araly1|332918|fgenesh1_pm.C_scaffold_8002261 555 5e-157
> Ahg897990 jgi|Araly1|897990|Al_scaffold_0005_1956
Length=1350
Score = 2054 bits (1112), Expect = 0.0
Identities = 1258/1330 (95%), Gaps = 4/1330 (0%)
Strand=Plus/Plus
Query 279 ATGCCTACTTTTTCTGCTATTGCTTTGGATAGAATGCTAGAGCCAGGGGCTTCCACGTCT 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCTACTTTTTCTGCTATTGCTTTGGATAGAATGCTAGAGCCAGGGGCTTCCACGTCT 60
Query 339 GTCGAGAGTGTTCCAAGCACAACTAATTTGTTTTATTCAAAGCCACCGATATCAAAACTG 398
|||||||||||||||||| |||| |||| ||||||||| |||||||| ||||||||||||
Sbjct 61 GTCGAGAGTGTTCCAAGCTCAACAAATTCGTTTTATTCTAAGCCACCAATATCAAAACTG 120
Query 399 GAGAAAGGTAAAGGTAAATTACCTAATGAGAGGACAGTTACTCGTCCTCTGATGTCACCT 458
||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 121 GAGAAAGGTAAAGGTAAATCACCTAGTGAGAGGACTGTTACTCGTCCTCTGATGTCACCT 180
Query 459 GCTCTCTACGCCACACCTGATGCGATTCCGCTTCCTAATTCGCCATCGTCTTTCCCACCG 518
||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 181 GCTCTCTACGCCACACCTGATGCAATTCCGCTTCCCAATTCGCCATCTTCTTTCCCACCA 240
Query 519 TCGCCTTATATCATCAACCACAAATCACGTGGACCTCCACGTCTTCTTAAAAGCTCTTCT 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGCCTTATATCATCAACCACAAATCACGTGGACCTCCACGTCTTCTTAAAAGCTCTTCT 300
Query 579 GAGGCTAATGTTGTGTCTTCTTCCCACCAGAAGACGCTGGAAGAGGAAACTATTACTGCT 638
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 GAGGCTAATGTTGTGTCTTCTTCCCACCAGAAGACGCTGGCAGAGGAAACTATTACTGCT 360
Query 639 GAAACAGATGTAAAGGTTTCCCCTCGGAGGAGGTCCACTTCCTTCTCGTTTCCTATCA-C 697
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |
Sbjct 361 GAAACAGATGTAAAGGTTTCCCCTCGGAGGAGGTCCACCTCTTTCTCATTTCCTATCAGC 420
Query 698 TGAGGTTACTGAAGATGATTATTCCAATGGAGTTCATGCTCGTACGGTTGGAAACTATAA 757
|||| ||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 421 -GAGGCTACTGAAGACGATTATTCCAATGGAGTCCATGCTCGTCCGGTTGGAAATTATAA 479
Query 758 TTTTGATGGTATTGTTGATGGTCCTGTTGGAAATTGGAGTCCGCTTGATGGGAAAAGTGG 817
||| ||||||||||||||||||||| |||| |||||||| | ||||| || |||| |||
Sbjct 480 TTTCGATGGTATTGTTGATGGTCCTTTTGGGCATTGGAGTTCACTTGACGGTAAAATTGG 539
Query 818 GAATGGGAAGTCAGAGTTGGATAACGCTGCTAATGGTTTAGAACGGGTAAATGGTCTGTC 877
|||||| ||||||||||||||||| |||||||||||||||||| ||| ||||| |||| |
Sbjct 540 GAATGGAAAGTCAGAGTTGGATAATGCTGCTAATGGTTTAGAATGGGAAAATGTTCTGAC 599
Query 878 TGAGCCAGTCCCTATTAAAACAGACAAGGAGAGTGAGTCAGAAGATTTCTATGACCCAGG 937
|||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 TGAGCCTGTCACTATCAAAACAGACAAGGAGAGTGAGTCTGAAGATTTCTATGACCCAGG 659
Query 938 TGAATCAGCAAGCTTCACAAGTAACACAGACGTAGAGGGTGATGCTGGGGACGAAAGTTC 997
||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 660 TGAATCAGCAAGCTTCACAAGTAACACAGACGTAGAGGGTGATGCAGGAGACGAAGGTTC 719
Query 998 ACAAAGACTTGCCACACCTGTGGGAGAGTTTTATGATGCTTGGGATGAACTATCAACCGA 1057
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 720 ACATAGACTTGCCACACCTGTTGGAGAATTTTATGATGCTTGGGATGAACTATCAACAGA 779
Query 1058 CAGTGGAATGCAGAGTTCAGTTAATAACATCGAATCTGAATTAAGTGAGATAAGGCTGAG 1117
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 780 CAGTGGAATGCAGAGTTCAGGTAACAACATCGAATCTGAATTAAGGGAGATAAGGCTGAG 839
Query 1118 TTTACTAATGGAAATCGAGAAGAGAAAACAGACAGAGGAGGCTTTGGAGCAGATGCAAAT 1177
|||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 840 TTTAGTAATGGAAATCGAGAAAAGAAAACAGACAGAGGAGGCTCTGGAGCAGATGCAAAT 899
Query 1178 TCACTGGCAGAGACTCCGTGAGCAGATGGCTCAGGTGGGTCTGTTCGTTCCTATTGATCC 1237
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 900 TCACTGGCAGAGACTCCGTGAGCAGTTGGCTCAGGTGGGTCTGTTCGTTCCCATTGATCC 959
Query 1238 TACCGCCTCCACCAACAACATGAATCTATCAGAAGAACTACGCTGTCAACTCGAGATTGC 1297
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 960 TACCACCTCCACCAACAACATGAATCTATCAGAAGAACTACGCTGCCAACTCGAGGTTGC 1019
Query 1298 GAGGTTTGTCTCTGACTCTTTAGGCAGAGGTATGGC-AAAGGCCGAGGTAGAGATGGAGA 1356
||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 1020 CAGGTTTGTCTCTGACTCTTTAGGCAGAGGTATGGCGAAAG-CGGAGGTAGAGATGGAGA 1078
Query 1357 TGGAATCTATGCTCGAAACTAAGAACTTTGAAATCACACGGTTGTCTGACCGTCTACACT 1416
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 TGGAATCTATGCTCGAAACTAAGAACTTTGAAATAACACGGTTGTCTGACCGTCTACACT 1138
Query 1417 ACTACGAGGCCGTGAACAGAGAGATGTCTCAACGAAACCAAGAAGCCATAGAGGTGGCAC 1476
|||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1139 ACTATGAGGCTGTGAACAGAGAAATGTCTCAACGAAACCAAGAGGCCATAGAGGTGGCAC 1198
Query 1477 GACgagagaggcagaagagaaagaagaggcagagaTGGATTTGGGGATCAATTGCAGCAA 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GACGAGAGAGGCAGAAGAGAAAGAAGAGGCAGAGATGGATTTGGGGATCAATTGCAGCAA 1258
Query 1537 CCATTACTCTAGGAAGCGCGGCATTGGCATGGTCTTACATTCCTGCAGCCAAACCATCAT 1596
|||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1259 CCATTACTCTAGGAAGTGCGGCATTGGCATGGTCTTACATTCCTGCATCGAAACCATCAT 1318
Query 1597 CTGAAGTATC 1606
||||||||||
Sbjct 1319 CTGAAGTATC 1328
> Ahg332918 jgi|Araly1|332918|fgenesh1_pm.C_scaffold_8002261
Length=1320
Score = 555 bits (300), Expect = 5e-157
Identities = 573/702 (82%), Gaps = 29/702 (4%)
Strand=Plus/Plus
Query 893 TAAAA-CAGACAAGGAGAGTGAGTCAGAAGATTTCTATGACCCAGGTGAATCAGCAAGCT 951
||||| ||||||||||| |||||| ||| |||||||| ||||||||| ||||| |||||
Sbjct 575 TAAAAGCAGACAAGGAGCTTGAGTCTGAAAATTTCTATAACCCAGGTGTATCAGTAAGCT 634
Query 952 TCACAAGTAACACAGACGTAGAGGGTGATGCTGG-GGA-C-GAAAGTTCACA-AAGACTT 1007
|||| |||| |||||| ||||| | | || ||| ||| | ||||| ||||| || | ||
Sbjct 635 TCACTAGTAGCACAGAGGTAGAAGAT-AT--TGGAGGAGCTGAAAGCTCACACAA-ATTT 690
Query 1008 GCCACACCTGTGGGAGAGTTTTATGATGCTTGGGATGAACTATCAACCGACAGTGGAATG 1067
| ||| ||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 691 TCTTCACATGTTGGAGACTTTTATGATGCTTGCGATGAACTATCCACCGACAGTGGAATG 750
Query 1068 CAGAGTTCAGTTAATAACATCGAATCTGAATTAAGTGAGATAAGGCTGAGTTTACTAATG 1127
||||||||||| || | | | |||||||| | || ||||||||| || |||||||||||
Sbjct 751 CAGAGTTCAGTCAACATCCTTGAATCTGAGCTGAGGGAGATAAGGTTGGGTTTACTAATG 810
Query 1128 GAAATCGAGAAGAGAAAACAGACAGAGGAGGCTTTGGAGCAGATGCAAATTCACTGGCAG 1187
|||||||||| ||||| ||| |||||||| || | ||||| |||||| |||| |||| |
Sbjct 811 GAAATCGAGAGGAGAAGGCAGGCAGAGGAGACTCTAGAGCAAATGCAAGTTCATTGGCGG 870
Query 1188 AGACTCCGTGAGCAGATGGCTC-AGGTGGGTCTGTTCGTTCCTATTGATCCTACC-GCCT 1245
|| |||||||| ||| |||| | | |||||| ||||| ||||| ||||||| ||| ||
Sbjct 871 AGGCTCCGTGACCAGTTGGC-CGATGTGGGTATGTTCCTTCCTCTTGATCCCACCAGCAG 929
Query 1246 CCACCA-ACAACATGAATCTATCAGAAGA-ACTACGCTGTCAACTCGAGATTGCGAGGTT 1303
||| | ||| |||||| ||| | || || | |||| |||||||| ||| | | |||||
Sbjct 930 CCA--ATACAGCATGAACCTAGCTGATGAGA-TACGTTGTCAACTTGAGGTCACCAGGTT 986
Query 1304 TGTCTCTGACTCTTTAGGCAGAG-GTATGGCAAAGGCCGAGGTAGAGATGGAGATGGAAT 1362
|||||||||||| ||||||| | | |||| ||||| |||||||||||||||||||||
Sbjct 987 TGTCTCTGACTCACTAGGCAGTGACT-TGGCCAAGGCAGAGGTAGAGATGGAGATGGAAG 1045
Query 1363 CT-ATGCTCGAAACTAAGAACTTTGAAATCACACGGTTGTCTGACCGTCTACACTACTAC 1421
|| | ||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1046 CTGA-GCTCGAAGCTAAGAACTTTGAAATCACACGGTTGTCTGACCGTCTTCACTATTAT 1104
Query 1422 GAGGCCGTGAAC-AGAGAGATGTCTCAACGAAACCAAGAAGCCATAGAGGTGGCACGACg 1480
||| | |||||| || || ||||| || || |||||||| || |||||||||||| | ||
Sbjct 1105 GAGACGGTGAACCAG-GAAATGTCCCAGCGCAACCAAGAGGCTATAGAGGTGGCAAGGCG 1163
Query 1481 aga-gaggcagaagagaaagaagaggcagagaTGGATTTGGGGATCAATTGCAGCAACCA 1539
|| | |||| |||| ||||| ||||||||| |||||||||||||||||||| |||||||
Sbjct 1164 CGACG-GGCAAAAGAAAAAGAGGAGGCAGAGGTGGATTTGGGGATCAATTGCTGCAACCA 1222
Query 1540 TTACTCTAGGAAGCGCG-G-CATTGGCATGGTCTTACATTCC 1579
| || || || || | | | | ||||| ||||| ||| ||||
Sbjct 1223 TCACGCTCGGGAGTG-GAGTC-TTGGCTTGGTCGTACCTTCC 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5