BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G50970.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898000 jgi|Araly1|898000|Al_scaffold_0005_1966 647 0.0
> Ahg898000 jgi|Araly1|898000|Al_scaffold_0005_1966
Length=582
Score = 647 bits (350), Expect = 0.0
Identities = 514/591 (87%), Gaps = 20/591 (3%)
Strand=Plus/Plus
Query 49 ATGAATTCTCACCAGAATCAAACCGGAGTGCAAAAGAAGGGAATAACGGAGAAAATCATG 108
||| ||||| ||||||| ||| ||||||||| ||||||||| || |||||||||||||||
Sbjct 1 ATGGATTCTTACCAGAACCAATCCGGAGTGCCAAAGAAGGGGATGACGGAGAAAATCATG 60
Query 109 GAGAAGCTACCAGGTCATCATGGACCTACTAACACTGGTGTTGTTCACCACGAGAAGAAA 168
|||||||||||||| |||||||| |||||| ||| || | ||| |||||||||||||||
Sbjct 61 GAGAAGCTACCAGGCCATCATGGTGCTACTAGCACCGGCGGTGTACACCACGAGAAGAAA 120
Query 169 GGGATGACGGAGAAAGTTATGGAGCAGCTGCCAGGTCATCATGGTGCTACTGGT-AC-C- 225
|| |||||||||||||||||||||||||| |||||| ||||| | | || |||| || |
Sbjct 121 GGTATGACGGAGAAAGTTATGGAGCAGCTACCAGGTAATCAT-G-GATA-TGGTAACACT 177
Query 226 GGTGGTGTTCACCACGAGAAGAAAGGAATGACGGAAAAAGTTATGGAGCAGCTGCCAGGT 285
|| ||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 178 GGCGGTGTTCACCACGAGAAGAAAGGTATGACTGAGAAAGTTATGGAGCAGCTACCAGGT 237
Query 286 CATCATGGATCACACCA-A-AC-TGGAACCAACACAACTTATGGTACTACTAACACTGGT 342
||||||| | | ||||| | | |||||||||||| |||||| |||||||||
Sbjct 238 CATCATGAAACTCACCAGACTCATGGAACCAACACGGGTTATGG------TAACACTGGC 291
Query 343 GGTGTTCACCACGAGaaaaaaaGTGTGACCGAAAAAGTTATGGAGAAACTACCAGGTCAT 402
||||||||||||||||| ||| || |||| || |||||||||||||||||||||||||||
Sbjct 292 GGTGTTCACCACGAGAAGAAAGGTATGACGGAGAAAGTTATGGAGAAACTACCAGGTCAT 351
Query 403 CATGGGTCACATCAAACTGGG-ACTAACACGGCTTAT-G-G-TACTAACACTAATGTCGT 458
|| |||||||| ||||| ||| |||||||||| |||| | | ||||||||||||||||||
Sbjct 352 CAGGGGTCACACCAAAC-GGGTACTAACACGGGTTATGGTGCTACTAACACTAATGTCGT 410
Query 459 TCACCATGAGAAAAAAGGTATAGCAGAAAAGATTAAAGAGCAACTGCCAGGTCATCATGG 518
||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||| ||
Sbjct 411 TCACCATCAGAAAAAAGGTATAGCTGAAAAAATTAAAGAGCAGTTGCCAGGTCATCAGGG 470
Query 519 AACTCACAAAACTGGAACCACCACAAGTTATGGTAATACTGGCGTTGTTCACCATGAAAA 578
| ||||| ||||||||||||| || | ||||||||||||||||||||||||| |||||
Sbjct 471 AGCTCACCAAACTGGAACCACTGTAAATCATGGTAATACTGGCGTTGTTCACCACGAAAA 530
Query 579 TAAAAGTACGATGGATAAGATTAAAGAGAAGCTTCCCGGTGGTCATCACTA 629
|| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 531 GAAGAGTACGATTGATAAGATTAAAGAGAAGCTTCCCGGTGGTCATCACTA 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5