BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51000.1
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485452 jgi|Araly1|485452|fgenesh2_kg.5__1444__AT3G51000.1 1736 0.0
> Ahg485452 jgi|Araly1|485452|fgenesh2_kg.5__1444__AT3G51000.1
Length=1109
Score = 1736 bits (940), Expect = 0.0
Identities = 1057/1114 (95%), Gaps = 6/1114 (1%)
Strand=Plus/Plus
Query 20 CCGCCACGTCATGTGTGCATCCATTTCTCAACTCTTGTGATAAAGTCTTCACCTTGGTCG 79
|||||||| || |||| ||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1 CCGCCACGACACGTGTACATCCATTTCTCAACTCTTGTAATAAAGTCTTCAGCTTGGTCG 60
Query 80 CTGATTTTCCTCCTCTCTCTCACAACTATCACCAACAAGAATCATGACGAGCTCTGTTAG 139
|||||||| || |||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 61 CTGATTTT--TCTTCTCTCTCACAACTATCAAGATCAAGAATCATGACGAGCTCTCTTAG 118
Query 140 AGAGAAG-AAGATCAAGACCAACGGGATTTGGTTAAACGTTGCTGAGAAAGGAGACGAAG 198
||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 119 AGAGAAGAAAG-TAAAGACCAACGGGATTTGGTTAAACGTTGCTGAGAAAGGAGACAAAG 177
Query 199 AAGGGCCTTTGGTTCTGTTACTCCATGGTTTCCCTGAGACATGGTACTCTTGGCGTCACC 258
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 AAGGGCCTTTGGTTCTGTTACTTCATGGTTTCCCTGAGACATGGTACTCTTGGCGTCACC 237
Query 259 AGATCGATTTCTTGTCTAGCCATGGTTACCACGTGGTCGCTCCAGATCTCAGAGGCTACG 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGATCGATTTCTTGTCTAGCCATGGTTACCACGTGGTCGCTCCAGATCTCAGAGGCTACG 297
Query 319 GTGACTCCGATTCTCTACCGAGCCACGAGTCTTACACTGTGAGTCACCTAGTCGCTGATG 378
||||||||||| |||| |||||||| ||||||||||||||||| ||||| || |||||||
Sbjct 298 GTGACTCCGATACTCTTCCGAGCCATGAGTCTTACACTGTGAGCCACCTCGTTGCTGATG 357
Query 379 TCATCGGTTTACTCGATCACTACGGCACTACTCAGGCTTTTGTGGCTGGGCATGACTGGG 438
|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 TCATCGGTTTGCTCGACCACTACGGCACTGCTCAGGCTTTTGTGGCTGGGCATGACTGGG 417
Query 439 GAGCAATCATAGGTTGGTGTCTATGCTTGTTTAGACCAGACCGAGTCAAAGGTTTCATAA 498
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct 418 GAGCAATCATAGGTTGGTGTCTGTGCTTATTTAGACCAGACCGAGTCAAAGGTTACATAA 477
Query 499 GTCTCTCTGTTCCATATTTCCCAAGAGATCCAAAACTCAAACCTTCAGATTTTTTCAAAA 558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 478 GTCTCTCTGTTCCATATTTCCCAAGAGATCCAAAACTCAAACCTTCAGATTTTTTCAAGA 537
Query 559 TTTTTGGAGATGGTTTATACATCACTCAGTTTCAGAAACCCGGAAGAGCTGAGGCTGCAT 618
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 538 GTTTTGGAGATGGTTTATACATCTCTCAGTTTCAGAAACCCGGAAGAGCTGAGGCTGCAT 597
Query 619 TTGCCAAGCATGATTGTTTATCGGTAATGAAGAAGTTCTTGCTAATAACAAGAACAGACT 678
|||||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 598 TTGCCAAGCATGATTGCTTAACGGTTATGAAGAAGTTCTTGCTGATAACAAGAACAGACT 657
Query 679 ACTTAGTGGCTCCTCCTGACACAGAGATCATAGATCATCTTGAGATACCGTCGACGATTC 738
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 658 ACTTAGTGGCTCCTCCTGATACAGAGATCATCGATCATCTTGAGATACCATCGACGATTC 717
Query 739 CAGATTGGATAACAGAAGAAGAGATTCAAGTGTATGCGGAAAAGTTTCAAAGATCTGGAT 798
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 718 CAGATTGGATAACAGAAGAAGAGATTCAAGTGTATGCAGAAAAGTTTCAAAGATCTGGAT 777
Query 799 TCACTGGCCCTTTGAATTACTACAGATCCATGGATATGAATTGGGAGATATTGGCGCCGT 858
|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 778 TCACAGGCCCTTTGAATTACTACAGAGCCATGGATCTGAATTGGGAGATATTGGCGCCGT 837
Query 859 GGCAAGACTCCAAAATCGTCGTTCCTACTAAGTTTATAGCGGGAGACAAAGATATCGGAT 918
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGCAAGACTCCAAAATCGTCGTTCCTACTAAGTTTATAGCGGGAGACAAAGATATCGGAA 897
Query 919 ATGAAGGACCTAATGGAACAATGGAGTATGTGAAAGGAGAGGTGTTCAAGATTGTTGTGC 978
|||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||| |
Sbjct 898 ATGAAGGACCCAATGGAACAATGGAGTATGTAAAAGGAGAGATGTTCAAGAGTGTTGTAC 957
Query 979 CTAATCTTGAGATAGTTGTTATTGAAGGTGGTCATCATTTTATCCAGCAGGAGAAGTCTG 1038
|||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 958 CTAACCTTGAGATTGTTGTTATTGAAGATGGTCATCATTTTATCCAGCAGGAGAAGTCTG 1017
Query 1039 AACAAGTCTCTCAAGAGATTCTCTCTTTCTTAAACAAGTTAAGCAAAACAGAGTAAAATC 1098
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1018 AACAAGTCTCTCAAGAGATTCTCTTTTTCTTAAACAAGTTAAGCAAAACAGAGTAAAATC 1077
Query 1099 ATACCGTTCTCTGTGGCCTTATAGAAGAACCATG 1132
|| ||||| | ||||||||||||||||||||||
Sbjct 1078 ATGCCGTTGT--GTGGCCTTATAGAAGAACCATG 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49636037934
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5