BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51240.1 Length=1508 Score E Sequences producing significant alignments: (Bits) Value Ahg485476 jgi|Araly1|485476|fgenesh2_kg.5__1468__AT3G51240.1 2191 0.0 Ahg938544 jgi|Araly1|938544|scaffold_502735.1 54.7 2e-06 > Ahg485476 jgi|Araly1|485476|fgenesh2_kg.5__1468__AT3G51240.1 Length=1494 Score = 2191 bits (1186), Expect = 0.0 Identities = 1359/1443 (94%), Gaps = 10/1443 (1%) Strand=Plus/Plus Query 73 GTGGTAGGTAGCTAGCGACCTCTTCGTTCGTCAGTCATCACAAGCTTTGAAAGATTTTCA 132 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 1 GTGGTAGGTAGCTAGCGACCTCTTCGTTCTTCAGTCATCACAAGCTTTGAAAGGTTTTCA 60 Query 133 GCTACCACTCTCTCCTTTATATATTCATTACACATCTCTTCTTTCTATATCTCTCTTAAT 192 ||||||||||||| | |||||||||||||||||||||||||| ||||| | || |||||| Sbjct 61 GCTACCACTCTCTTC-TTATATATTCATTACACATCTCTTCTCTCTATCTGTCCCTTAAT 119 Query 193 TTAGTCTTTTGTCTTCGTAATTACAATGGCTCCAGGAACTTTGACTGAGCTAGCCGGAGA 252 |||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 120 TTAGTCCTTTGTTTTTGTAATTACAATGGCTCCAGGAACTTTGACTGAGCTCGCCGGAGA 179 Query 253 GTCTAAGCTCAACTCTAAATTTGTCAGGGACGAAGATGAACGGCCCAAAGTCGCTTACAA 312 ||||||||||||||||||||| ||| ||||||| || ||||| ||||||||||||||||| Sbjct 180 GTCTAAGCTCAACTCTAAATTCGTCCGGGACGAGGACGAACGCCCCAAAGTCGCTTACAA 239 Query 313 TGTGTTTAGCGACGAAATCCCGGTGATCTCTCTCGCCGGTATCGATGACGTCGATGGAAA 372 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 TGAGTTTAGCGACGAAATCCCGGTGATCTCTCTCGCCGGTATCGATGATGTCGATGGAAA 299 Query 373 AAGAGGAGAGATCTGCCGTCAGATCGTTGAGGCTTGTGAGAATTGGGGCATCTTCCAAGT 432 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 AAGAGGAGAGATCTGCCGTCAGATCGTGGAGGCTTGTGAGAATTGGGGCATCTTCCAAGT 359 Query 433 GGTCGATCACGGCGTCGATACTAACTTAGTGGCGGATATGACTCGTCTCGCTCGTGACTT 492 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 360 GGTCGATCACGGCGTCGATACTAACTTGGTAGCGGATATGACTCGTCTCGCTCGTGACTT 419 Query 493 CTTTGCTTTACCTCCGGAAGACAAGCTCCGTTTCGACATGTCCGGTGGTAAAAAAGGAGG 552 ||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 420 CTTCGCTTTACCTCCGGAGGAAAAGCTCCGTTTCGACATGTCCGGTGGTAAAAAAGGAGG 479 Query 553 ATTCATCGTCTCTAGTCACCTCCAGGGAGAGGCTGTGCAAGATTGGAGAGAGATTGTAAC 612 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 480 GTTCATTGTCTCTAGTCACCTCCAGGGAGAGGCTGTGCAAGATTGGAGAGAGATAGTGAC 539 Query 613 GTATTTCTCGTACCCGGTGAGAAACAGAGACTACTCACGGTGGCCAGATAAGCCGGAAGG 672 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 540 GTATTTCTCGTATCCGGTGAGAAACAGAGACTTCTCACGGTGGCCAGATAAGCCGGAAGG 599 Query 673 TTGGGTGAAAGTGACGGAGGAGTATAGTGAGAGGCTTATGAGTTTGGCTTGTAAGCTTCT 732 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ATGGGTGAAAGTGACGGAGGAGTATAGTGAGAGGCTTATGAGTTTGGCTTGTAAGCTTCT 659 Query 733 TGAGGTTTTGTCTGAAGCTATGGGTCTTGAGAAAGAGTCTCTTACCAATGCATGCGTCGA 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TGAGGTTTTGTCTGAAGCTATGGGTCTTGAGAAAGAGTCTCTTACCAATGCATGCGTCGA 719 Query 793 TATGGACCAAAAGATTGTTGTTAATTATTACCCAAAATGCCCTCAGCCTGATCTCACCCT 852 |||||||||||||||||||||||||||||| |||||||||||||||||||| || || || Sbjct 720 TATGGACCAAAAGATTGTTGTTAATTATTATCCAAAATGCCCTCAGCCTGACCTTACTCT 779 Query 853 CGGACTCAAGCGTCACACTGACCCTGGAACCATTACCTTGCTGCTACAAGACCAAGTCGG 912 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 780 CGGACTCAAGCGTCACACTGACCCTGGAACCATTACTTTGCTGCTCCAAGACCAAGTCGG 839 Query 913 TGGATTACAAGCCACACGTGACAATGGCAAGACATGGATTACGGTTCAGCCTGTTGAAGG 972 |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 840 TGGACTACAAGCCACACGTGACAATGGCAAGACGTGGATTACGGTCCAGCCTGTTGAAGG 899 Query 973 AGCGTTTGTCGTCAATCTCGGCGACCACGGCCATTTTTTGAGCAATGGGAGGTTCAAGAA 1032 ||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 900 AGCGTTTGTAGTCAATCTCGGCGACCACGGTCATTTTCTGAGCAATGGGAGGTTCAAGAA 959 Query 1033 TGCTGATCATCAGGCCGTGGTGAACTCTAACTCGAGCAGATTATCCATAGCCACGTTCCA 1092 ||||||||||||||| ||||||||||| |||||||| ||| |||||||||| |||||||| Sbjct 960 TGCTGATCATCAGGCGGTGGTGAACTCAAACTCGAGTAGACTATCCATAGCTACGTTCCA 1019 Query 1093 GAACCCCGCGCCGGATGCCACAGTGTATCCACTGAAAGTAAGAGAAGGAGAGAAGGCAAT 1152 ||| || || || |||||||| ||||||||||| ||||||||||||||||||||| | || Sbjct 1020 GAATCCGGCCCCCGATGCCACCGTGTATCCACTTAAAGTAAGAGAAGGAGAGAAGCCGAT 1079 Query 1153 ATTGGAGGAGCCAATCACGTTTGCCGAGATGTATAAGAGAAAGATGGGAAGAGATTTGGA 1212 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 1080 CTTGGAGGAGCCAATCACGTTTGCTGAGATGTATAAGAGAAAGATGGGAAGAGATCTGGA 1139 Query 1213 GCTTGCTCGCCTCAAGAAGCTGGCTAAAGAGGAGCGTGACCACAAAGAAGTTGACAAGCC 1272 ||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||| |||||| Sbjct 1140 GCTGGCTCGCCTCAAGAAGTTGGCTAAAGAGGAACGTGACCACAAGGAAGTTGCCAAGCC 1199 Query 1273 TGTCGACCAAATCTTCGCTTAGAATCTTTGTGTTCTTGCTTACTTGTTGT-T-G---CGT 1327 ||||||||||||||||||||||||||||||| |||| ||||||||||||| | | | | Sbjct 1200 TGTCGACCAAATCTTCGCTTAGAATCTTTGT-TTCTCGCTTACTTGTTGTGTTGGTTCCT 1258 Query 1328 T--GGTTCTGTTTTGTACGTTGGTACTGAAAATTATGCTAGGCTCGGTGTGTTTTGTGTT 1385 | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1259 TCCGGTTCTGTTTTGTACGTTGGTACTGAAAATTATGCTAAGCTCGGTGTGTTTTGTGTT 1318 Query 1386 TATTTATGTTCTTTCGAATCATAAAGAAATAATGATAATTGATGCACTTGTCTATGACAA 1445 | ||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1319 TCTTTATTTTCGTTCTAATCATATAGAAATAATGATAATTGATGCACTTGTCTATGACAA 1378 Query 1446 AAACATCATACTCCACCTGTATTTGACGCGTTGGGTTTATGTCAAAAAGCATTAATACTT 1505 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1379 AAACATCATACTTCACCTGTATTTGACGCGTTGGGTTTATGTCAAAA-GCATTAATACAT 1437 Query 1506 CAA 1508 ||| Sbjct 1438 CAA 1440 > Ahg938544 jgi|Araly1|938544|scaffold_502735.1 Length=1132 Score = 54.7 bits (29), Expect = 2e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 812 GTTAATTATTACCCAAAATGCCCTCAGCC 840 ||||||||||||||||||||||||||||| Sbjct 669 GTTAATTATTACCCAAAATGCCCTCAGCC 697 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56449743090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5