BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51370.1
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485488 jgi|Araly1|485488|fgenesh2_kg.5__1480__AT3G51370.1 2774 0.0
Ahg490616 jgi|Araly1|490616|fgenesh2_kg.7__49__AT4G38520.2 411 1e-113
> Ahg485488 jgi|Araly1|485488|fgenesh2_kg.5__1480__AT3G51370.1
Length=1799
Score = 2774 bits (1502), Expect = 0.0
Identities = 1722/1823 (94%), Gaps = 36/1823 (2%)
Strand=Plus/Plus
Query 1 TCTGGTTAGAAGCAGTGGAGCcctttcctttctctcttctctctttt-ctcctttgcctt 59
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 TCTGGTTAGAAGCAGTGGAGCCCTTTCCTTTCTCTCTTCTCTCTTTTCCT-CTTTGCCTT 59
Query 60 cttcctctccG-AGAGAAGGTCGACGCTActtcttcttcttccttctttcttctggatct 118
| | |||||| |||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 60 C-T--TCTCCGAAGAGAAGGTCGACGCTACTTCTTC--CTT-CTTC---CTTCTGGATCT 110
Query 119 gattcggatccatcactctctctttctctACATCAATTTGTTTTCTCAGATCTTCATCtt 178
|||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||
Sbjct 111 GATTCGGATCCATCACTCTCTCGTTCTCTACATCAA----TTTT-TCAGATCTTCATCTT 165
Query 179 tttttCGTATACCTGTATTTGTCGACCTTTTC-TCTC-AATCACTAAACCCTCAAATCCt 236
|||||| | ||||||||||||||||||||||| |||| |||||||||| ||||||||||
Sbjct 166 TTTTTCTTCTACCTGTATTTGTCGACCTTTTCTTCTCTTATCACTAAACTCTCAAATCCT 225
Query 237 tt-ttttGGATTATAAGATTGCTTCTCTGATTGTAATTGCTTTGATGTGTATCAGTTGAC 295
|| ||||||| | | ||||||| | |||||||||||||| |||| |||||||| ||||||
Sbjct 226 TTGTTTTGGA-T-TGAGATTGC-T-TCTGATTGTAATTGATTTGTTGTGTATCTGTTGAC 281
Query 296 TTGTGAAAAGTCTGCGAGTGACTTCTTCCTGTTTACACATCAGCTACTCCAGAATCTC-T 354
|||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| |
Sbjct 282 TTGTGAAAAGTCTGCGAGTGACTTCTTCTTGTTT--ACATCAGCTTCTGTTGAATCTCTT 339
Query 355 -CAGATTCTTAAAAGCTTAAATCTTT-TTTCGACTTTGATTGTTTCTGTGCATCGCTTTG 412
||||||||||||||||||||||||| || | |||||| ||||||||||||||| |||||
Sbjct 340 GCAGATTCTTAAAAGCTTAAATCTTTGTTGCTACTTTGTTTGTTTCTGTGCATCCCTTTG 399
Query 413 ACGGATGTGGAGG-AAAAAAGGGGTGTCTTGATGAAATGAGGGATGTTATCAACGTTAAT 471
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 400 ACGGATGTGGAGGAAAAAAAGGGTTGTCTTGATGAAATGAGGGATGTTATCAACGTTAAT 459
Query 472 GAAACTCTTGAGTGCTTGTCTGTGGCCGTCTTCTTCCTCGGGCAAGTCCTCTGATTCAAC 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 460 GAAACTCTTGAGTGCTTGTCTGTGGCCGTCTTCTTCCTCGGGCAAGTCCTCTGAATCAAC 519
Query 532 TGGAAAACAAGATGGATTGCTTTGGTACAAAGACTTTGGTCAGCACCTCGTTGGTGAATT 591
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 520 AGGAAAACAAGATGGATTGCTTTGGTACAAAGACTCTGGTCAGCACCTCGTTGGTGAATT 579
Query 592 CTCCATGGCTGTTGTTCAAGCCAACAACTTGCTTGAGGATCAGAGCCAAGTTGAGTCTGG 651
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 580 CTCCATGGCTGTTGTTCAAGCCAATAACTTGCTTGAGGATCAGAGTCAAGTCGAGTCTGG 639
Query 652 GCCTTTGAGTACTCTTGACTCTGGTCCTTATGGAACTTTTATTGGAATCTATGATGGCCA 711
||||||||||||||||||||||||||||||||||| ||| |||| | ||||| |||||
Sbjct 640 TCCTTTGAGTACTCTTGACTCTGGTCCTTATGGAACCTTTGTTGGTGTATATGACGGCCA 699
Query 712 TGGCGGGCCTGAGACGTCGCGATTTGTTAATGATCACCTTTTTCAGCATCTAAAGAGATT 771
||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TGGTGGCCCTGAGACCTCACGATTTGTTAATGATCACCTTTTTCAGCATCTAAAGAGATT 759
Query 772 TGCTGCAGAGCAGGCCTCTATGTCGGTGGATGTAATTAAAAAGGCGTATGAGGCGACAGA 831
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 CGCTGCAGAGGAGGCCTCTATGTCGGTGGATGTAATTAAAAAGGCGTATGAGGCGACAGA 819
Query 832 AGAAGGTTTTTTAGGGGTTGTGACAAAGCAGTGGCCAACTAAGCCACAGATTGCAGCGGT 891
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 820 AGAAGGTTTTTTAGGGGTTGTGACAAAGCAGTGGCCAACTAAGCCACTGATTGCAGCGGT 879
Query 892 TGGGTCTTGCTGCTTGGTGGGTGTTATATGCGGAGGGATGCTTTACATAGCTAATGTTGG 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 TGGGTCTTGCTGCTTGGTGGGTGTTATATGCGGAGGGATGCTTTACATAGCTAATGTTGG 939
Query 952 GGATTCCCGTGCAGTTCTTGGAAGGGCTATGAAGGCGACAGGTGAGGTTATTGCCCTTCA 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 940 GGATTCCCGTGCAGTTCTTGGAAGGGCTATGAAGGCGACAGGTGAGGTTATTGCGCTTCA 999
Query 1012 GCTCTCTGCTGAACATAATGTGAGTATAGAGTCTGTTAGACAGGAGATGCACTCCTTGCA 1071
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1000 GCTCTCCGCAGAACATAATGTGAGCATAGAGTCTGTTAGACAGGAGATGCACTCCTTGCA 1059
Query 1072 CCCAGATGACTCGCATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTAT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1060 TCCAGATGACTCGCATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGACTTAT 1119
Query 1132 TCAGATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAAGGAACC 1191
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1120 TCAGGTATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCGGAGTTCAACAAGGAACC 1179
Query 1192 ATTGTACACAAAGTATAGAATCCGTGAACCGTTCAAAAGACCTATCTTGAGTGGGGAACC 1251
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1180 ATTGTACACAAAGTATAGAATCCGTGAACCGTTCAAAAGACCGATCTTGAGTGGGGAACC 1239
Query 1252 AACGATAACGGAGCATGAGATCCAACCACAAGATAAGTTTCTAATATTCGCTTCTGATGG 1311
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1240 AACGATAACGGAGCATGAGATCCAACCACAAGATCAGTTTCTAATATTCGCTTCTGATGG 1299
Query 1312 ACTATGGGAACAGATGAGCAACCAAGAAGCTGTTGACATCGTTCAGAACCACCCACGAAA 1371
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1300 ACTATGGGAACAGCTGAGCAACCAAGAAGCCGTTGACATCGTTCAGAACCACCCACGAAA 1359
Query 1372 CGGGATTGCACGGAGACTGGTGAAGATGGCACTGCAAGAGGCGGCAAAGAAACGAGAGAT 1431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TGGGATTGCACGGAGACTGGTGAAGATGGCACTGCAAGAGGCGGCAAAGAAACGAGAGAT 1419
Query 1432 GAGATATTCTGATCTAAAGAAGATAGAGAGAGGTGTGAGGAGACATTTCCACGATGACAT 1491
|||||| |||||||| ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1420 GAGATACTCTGATCTGAAGAAGATAGAGAGAGGAGTGAGAAGGCATTTCCACGATGACAT 1479
Query 1492 AACTGTGGTCA-TAATCTTCCTTGATACCAATCAGGTGAGCTCTGTGAAAGGACCCCCAC 1550
||||||||| | | |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1480 AACTGTGGT-AGTCATCTTCCTTGATACCAATCAGGTGAGCTCTGTGAAAGGACCCTCTC 1538
Query 1551 TCTCTATCCGAGGCGGTGGTATGACATTCCCCAAGAAAATCTAAGATACTCCACTTTTAG 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 TCTCTATCCGAGGCGGTGGTATGACATTCCCCAAGAAAATCTAAGATACTCCACTTTTAG 1598
Query 1611 GCTCC-ATCTTTTGTAGTTATATaaaaaaaaaaGTCACT-GTTGTTGGTATAAGAATGTA 1668
||||| ||||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 1599 GCTCCCATCTTTTGTAGTTATATAAAAAAAAG-GTCACTCGT-GTTGGTATAAGAATGTA 1656
Query 1669 TAATTTTAACGTGAAAGCCACACAATACTGATGTTTGGAACTCATTCCAGTAATTATTAA 1728
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1657 TAATTTTAACGTGAAAGCCACACACCACTGACGTTTGGAACTCATTCCAGTAATTATTAA 1716
Query 1729 TTTTTATTTATTCAGCAAACTTTGTGTAACGATGTAATTTGTTGTTGATGATGAATGAAT 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1717 TTTTTATTTATTCAGCAAACTTTGTGTAACGATGTAATTTGTTGTTGATGATGAATGGAT 1776
Query 1789 ATGAATGTAGGCCTTCTTCTTCT 1811
|||||||||||||||||||||||
Sbjct 1777 ATGAATGTAGGCCTTCTTCTTCT 1799
> Ahg490616 jgi|Araly1|490616|fgenesh2_kg.7__49__AT4G38520.2
Length=1796
Score = 411 bits (222), Expect = 1e-113
Identities = 767/1024 (75%), Gaps = 62/1024 (6%)
Strand=Plus/Plus
Query 539 CAAGATGGATTGCTTTGGTACAAAGACTTTGGTCAGCACCTCGTTGGTGAATTCTCCATG 598
||||| || ||||| ||||| | ||||| | ||||||| || ||||||| |||||||||
Sbjct 537 CAAGAGGGTTTGCTCTGGTATAGAGACTCCGCTCAGCACGTCTTTGGTGACTTCTCCATG 596
Query 599 GCTGTTGTTCAAGCCAACAACTTGCTTGAGGATCAGAGCCAAG-TTGAGTCTGGGC-CT- 655
|| || ||||||||||||| |||||| ||||| ||||||| || | |||||| ||| ||
Sbjct 597 GCCGTCGTTCAAGCCAACAGCTTGCTCGAGGACCAGAGCC-AGCTCGAGTCT-GGCTCTC 654
Query 656 TTGAG-TACTCTTGACTCTGGTCCTTATGGAACTTTTATTGGAATCTATGATGGCCATGG 714
|| || | ||| ||||||||||| ||||| || ||| |||| |||| || ||||| ||
Sbjct 655 TT-AGCT-CTCACGACTCTGGTCCCTATGGCACCTTTGTTGGCGTCTACGACGGCCACGG 712
Query 715 CGGGCCTGAGACGTCGCGATTTGTTAATGATCACCTTTTTCAGCATCTAAAGAGATTTGC 774
|| |||||||| || || || | |||||||| | || || || || ||||| ||| |
Sbjct 713 TGGCCCTGAGACTTCTCGCTTCATCAATGATCATATGTTCCACCACCTCAAGAGGTTTAC 772
Query 775 TGCAGAGCAGGC-CTCTATGTCGGT-GGATGTAATTAAAAAGGCGTAT-GAGGCGACAGA 831
||||||||| | | |||||| | || || || |||||||||| | | ||||| ||
Sbjct 773 TGCAGAGCA-ACAGTGTATGTC-ATCAGAGGTGATAAAAAAGGCGT-TCCAAGCGACTGA 829
Query 832 AGAAGGTTTTTTAGGGGTTGTGACAAAGCAGTGGCCAACTAAG-CCACAGATTG-CAGCG 889
|||||| || ||| | || ||||| || | | |||| || || ||||| | || |
Sbjct 830 AGAAGGGTTCTTATCCATAGTTACAAATCAATTTCAAACT-AGACCTCAGATAGCCA-CT 887
Query 890 GTTGGGTCTTGCTG-CTTGGTGGGTGTTATATGCGGA-GGGATGCTTTACATAGCTAATG 947
|| ||||| ||||| ||| || |||| || ||| || |||| ||| ||| | || || |
Sbjct 888 GTGGGGTCATGCTGTCTT-GTAAGTGTCATCTGC-GATGGGAAGCTCTACGTGGCCAACG 945
Query 948 TTGGGGATTCCCGTGCAGTTCTTGGA-AGGGCTATGAAGGCGACAGGTG-AGGTTATTGC 1005
|| || || || || ||||| ||| | | | |||| || || |||| || | | |||
Sbjct 946 CAGGTGACTCACGGGCCGTTCTGGGACAAGTC-ATGAGGGTAACCGGTGAAGCTCA-TGC 1003
Query 1006 C-CTTCAGCTCTCTGCTGAACATAATGTGA-GTATAGAGTCTGTTAGACAGGAGA-TGCA 1062
| | ||||||||| || || || || | | ||||||||| || |||| ||| | | ||
Sbjct 1004 CAC-TCAGCTCTCAGCCGAGCACAACG-CATCTATAGAGTCAGTGAGACGGGA-ACTTCA 1060
Query 1063 CTCCTTGCACCCAGATGACT-CGCATATTGT-CATGTTAAAGCACAATGTGTGGCGTGTT 1120
|| |||| || ||| | | || ||||||| | | ||| || || || ||||| ||
Sbjct 1061 AGCCCTGCATCCGGATCA-TCCGGATATTGTGGTTCTGAAA-CATAACGTCTGGCGAGTA 1118
Query 1121 AAGGGCCTTATTCAGATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGG-CAGAGTT 1179
|| ||| | |||||| | || |||||||| || || |||||| || ||| || |||||||
Sbjct 1119 AAAGGCATCATTCAGGTTTCAAGATCCATTGGTGATGTGTAT-TTGAAACGGTCAGAGTT 1177
Query 1180 CAACAAGGAACCATTGTACACAAAGTAT-AGAATC-CGTGAACCGTTCA-AAAGACCTA- 1235
||||| |||||| |||| |||| | | || || || |||||||| ||| || |
Sbjct 1178 CAACAGGGAACCGCTGTATGCAAAAT-TCAGGCTCAGGT-CACCGTTCAGCAAG-CC-AT 1233
Query 1236 T-CTTGAGTGGGGAACCAACGATAACGGAGCATGAGA-TCCAACCACAAGATAAGTTTC- 1292
| | |||||| || || |||| |||| |||| | | | | || || ||| || |||
Sbjct 1234 TAC-TGAGTGCAGAGCCGGCGATCACGGTGCAT-ACACTGGAGCCGCACGATCAG-TTCA 1290
Query 1293 TAATAT-TCGCTTCTGATGGACTATGGGAACAGATGAGCAACCAAGAAGCTGTTGACATC 1351
| |||| | ||||| |||||||| |||||||| ||||| ||||||||||| || ||||||
Sbjct 1291 TTATATGT-GCTTCAGATGGACTGTGGGAACATATGAGTAACCAAGAAGCAGTAGACATC 1349
Query 1352 GTTCAGAACCACCCACGAAACGGGATTGCACGGAGACTGGTG-AAGATGGCACTGCAAGA 1410
|| ||||| || || ||||||||||||||| | | |||||| ||| | || || |||||
Sbjct 1350 GTCCAGAATCATCCGCGAAACGGGATTGCAAAGCGGCTGGTGAAAG-TAGCGCTACAAGA 1408
Query 1411 GGCGGCAAAGAA-ACGAGAGATGAGATATTCTGATCT-AAAGAAGATAGAGAGAGGTGTG 1468
||||||||||| | ||||||||||||| || || || ||| |||||||| ||||| |||
Sbjct 1409 AGCGGCAAAGAAGA-GAGAGATGAGATACTCAGACCTGAAA-AAGATAGACAGAGGAGTG 1466
Query 1469 AGGAGACATTTCCACGATGACATAACTGTGGTCATAATCTTCCTTGATACCAATC-AGGT 1527
|||||||||||||||||||||||||| ||||| | ||||| ||||||| || | || |
Sbjct 1467 AGGAGACATTTCCACGATGACATAACAGTGGTTGTTGTCTTCTTTGATACAAACCTAG-T 1525
Query 1528 GAGC 1531
||||
Sbjct 1526 GAGC 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68105358060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5